BAC Information

Click to search

BAC

Clone NameB6Ng01-152E08
Chromosome15 (Build37)
Map Location 97,862,808 - 97,990,937
singlet/doubletdoublet
Overlap geneSenp1, Pfkm, Asb8
Upstream geneSlc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1
Downstream geneAI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152E08.bB6Ng01-152E08.g
ACCDH947885DH947886
length6831,043
definitionDH947885|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E08, 5' end.DH947886|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,862,808 - 97,863,490)(97,989,886 - 97,990,937)
sequence
gaattcagcctgttctggggtgggaacgaaggtcctcaggtaaattagag
gctcctgtttgggaacatcctcatgttcactcttgcacaggcaggattag
gggcaaggagacatccagacacagagggcctgtggagtgtggtcacagga
tactacttttcccagcatctgccaccttcccttggtccctgcagagatgg
acccaatccaggaagtggtccatcagaagacagcactgcagtgaggcagg
ggagtgtttccacagcttgaggcatagcaatgaagaccatgaagacacta
tgggatgggtgaagttgaccctgaccctgaaggactgcaggggttgaata
tagcaatgcttgcatcatttacaaagaagctcactcttgcaattcccaga
actaatttttttaaaaaaagatttttacatatatgagtgttttgccttca
tatgtctgttcaccacatgcatgcagtacccgcagaagccagaaaagggt
gctgggtcctctggaaatcaagttagacagttagatgttaactgtcatat
gggtgttgggaatcaaactctaggcaggcgatctacaagaacagccagtg
ctcttggctcttgaccactgggctacctccccaggctcagctccctggtt
cttacgtttctgggggtagggtggggatggggg
gaattccagtttctcagaacaagacttgtaacatagccatacatattaaa
tattgagtagttattaaatgtttcttaatttacaagcagaagaatttcat
gtttgtctttctgttactgacgaagagcttaactccactgcaactgaggg
acacctcttgtgcaatcttagccttttaaaacttgttaacacctgtttat
aaacgctgttttttataactattccacaggtaaccaaaacaactgtgttc
tgtagatatacctattcagtctagtttttaacaaatgtgtacattatttg
taaagcgtcctatgtctgagtcgctttctttacttatatggcaagtatct
tactctactaattttgtgtgtttagccttgtatgttctggagtggtgcac
atacgattaattgatttagtaatttttttttatttagttagttttatgtg
tatggatgttgttccttcatgtatgtgtaccatgtgtgtccctggtgtgc
tcaggggtcagaagaaggcatcagagcccccagaacaggagccagtgagc
caccgtgagtgctgggaagcaagcctgggtcctcagaaagaacaacacca
gttgcagagttgttctggatctcatggcctcttctgacctctgtgacctg
agcaccggccacacacacagtacacacacagacatgcagacaaaacccct
aaatacaaaagataaaatataaagttaacttgtaaaactagatttacaga
ttttaaaaaaaggcaatcttgacaatagtcattgtgctggcatttattag
cctgatattacaaagcctcttcagtacatattaatatggattgcttttgt
gctgcattttccttcttccatttgtcatatctgtcttttatgtttaagga
gggtttgtggtcatgcaagcccccctttttttgcctttttacatatatat
cacgatttattattttatgtttatgaacacctctgaagctcttcgttctc
atcccaccgtgcaaggactgggggcaggatgctttcaatggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_97862808_97863490
seq2: B6Ng01-152E08.b_47_729

seq1  GAATTCAGCCTGTTCTGGGGTGGGAACGAAGGTCCTCAGGTAAATTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGTTCTGGGGTGGGAACGAAGGTCCTCAGGTAAATTAGAG  50

seq1  GCTCCTGTTTGGGAACATCCTCATGTTCACTCTTGCACAGGCAGGATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTTTGGGAACATCCTCATGTTCACTCTTGCACAGGCAGGATTAG  100

seq1  GGGCAAGGAGACATCCAGACACAGAGGGCCTGTGGAGTGTGGTCACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGAGACATCCAGACACAGAGGGCCTGTGGAGTGTGGTCACAGGA  150

seq1  TACTACTTTTCCCAGCATCTGCCACCTTCCCTTGGTCCCTGCAGAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTTTCCCAGCATCTGCCACCTTCCCTTGGTCCCTGCAGAGATGG  200

seq1  ACCCAATCCAGGAAGTGGTCCATCAGAAGACAGCACTGCAGTGAGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCCAGGAAGTGGTCCATCAGAAGACAGCACTGCAGTGAGGCAGG  250

seq1  GGAGTGTTTCCACAGCTTGAGGCATAGCAATGAAGACCATGAAGACACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTTCCACAGCTTGAGGCATAGCAATGAAGACCATGAAGACACTA  300

seq1  TGGGATGGGTGAAGTTGACCCTGACCCTGAAGGACTGCAGGGGTTGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGGTGAAGTTGACCCTGACCCTGAAGGACTGCAGGGGTTGAATA  350

seq1  TAGCAATGCTTGCATCATTTACAAAGAAGCTCACTCTTGCAATTCCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGCTTGCATCATTTACAAAGAAGCTCACTCTTGCAATTCCCAGA  400

seq1  ACTAATTTTTTTAAAAAAAGATTTTTACATATATGAGTGTTTTGCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTTTTAAAAAAAGATTTTTACATATATGAGTGTTTTGCCTTCA  450

seq1  TATGTCTGTTCACCACATGCATGCAGTACCCGCAGAAGCCAGAAAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGTTCACCACATGCATGCAGTACCCGCAGAAGCCAGAAAAGGGT  500

seq1  GCTGGGTCCTCTGGAAATCAAGTTAGACAGTTAGATGTTAACTGTCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCCTCTGGAAATCAAGTTAGACAGTTAGATGTTAACTGTCATAT  550

seq1  GGGTGTTGGGAATCAAACTCTAGGCAGGCGATCTACAAGAACAGCCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGGGAATCAAACTCTAGGCAGGCGATCTACAAGAACAGCCAGTG  600

seq1  CTCTTGGCTCTTGACCACTGGGCTACCTCCCCAGGCTCAGCTCCCTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCTCTTGACCACTGGGCTACCTCCCCAGGCTCAGCTCCCTGGTT  650

seq1  CTTACGTTTCTGGGGGTAGGGTGGGGATGGGGG  683
      |||||||||||||||||||||||||||||||||
seq2  CTTACGTTTCTGGGGGTAGGGTGGGGATGGGGG  683

seq1: chr15_97989886_97990937
seq2: B6Ng01-152E08.g_69_1111 (reverse)

seq1  AGCCATTGAAAGCATACTGACCCAGGGTCCTTGCACGGTGGGGATGAGAA  50
      ||||||||||||||| ||| |||   ||||||||||||| ||||||||||
seq2  AGCCATTGAAAGCATCCTG-CCCCCAGTCCTTGCACGGT-GGGATGAGAA  48

seq1  CG-AGAGCTACAGA-GTGTTCATATACATAAAATAAATAAATCGTGAATA  98
      || |||||| |||| ||||||||| ||||||||| ||||||||||| |||
seq2  CGAAGAGCTTCAGAGGTGTTCATAAACATAAAAT-AATAAATCGTG-ATA  96

seq1  TATATGTTAAAAAGGCAAAAAAAGGGGGGGCCTGGCATGAACCACAAAAC  148
      |||||| ||||||||||||||||||||||  || ||||| ||||| ||||
seq2  TATATG-TAAAAAGGCAAAAAAAGGGGGG--CTTGCATG-ACCAC-AAAC  141

seq1  CCTCTTTAAACATAAAAGAACAGATATGACAAATGGAAGAAGGAAAATGC  198
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCCTTAAACATAAAAG-ACAGATATGACAAATGGAAGAAGGAAAATGC  190

seq1  AGCACAAAAGCAATCCATATTAATATGTACTGAAGAGGCTTTGTTAATAT  248
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCACAAAAGCAATCCATATTAATATGTACTGAAGAGGCTTTG-TAATAT  239

seq1  CAGGCTAATAAATGCCAGCACAATGACTATTGTCAAGATTGCCTTTTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAATAAATGCCAGCACAATGACTATTGTCAAGATTGCCTTTTTTT  289

seq1  AAAATCTGTAAATCTAGTTTTACAAGTTAACTTTATATTTTATCTTTTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTAAATCTAGTTTTACAAGTTAACTTTATATTTTATCTTTTGT  339

seq1  ATTTAGGGGTTTTGTCTGCATGTCTGTGTGTGTACTGTGTGTGTGGCCGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGGTTTTGTCTGCATGTCTGTGTGTGTACTGTGTGTGTGGCCGG  389

seq1  TGCTCAGGTCACAGAGGTCAGAAGAGGCCATGAGATCCAGAACAACTCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGGTCACAGAGGTCAGAAGAGGCCATGAGATCCAGAACAACTCTG  439

seq1  CAACTGGTGTTGTTCTTTCTGAGGACCCAGGCTTGCTTCCCAGCACTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGTGTTGTTCTTTCTGAGGACCCAGGCTTGCTTCCCAGCACTCAC  489

seq1  GGTGGCTCACTGGCTCCTGTTCTGGGGGCTCTGATGCCTTCTTCTGACCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACTGGCTCCTGTTCTGGGGGCTCTGATGCCTTCTTCTGACCC  539

seq1  CTGAGCACACCAGGGACACACATGGTACACATACATGAAGGAACAACATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACACCAGGGACACACATGGTACACATACATGAAGGAACAACATC  589

seq1  CATACACATAAAACTAACTAAATAAAAAAAAATTACTAAATCAATTAATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATAAAACTAACTAAATAAAAAAAAATTACTAAATCAATTAATC  639

seq1  GTATGTGCACCACTCCAGAACATACAAGGCTAAACACACAAAATTAGTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCACCACTCCAGAACATACAAGGCTAAACACACAAAATTAGTAG  689

seq1  AGTAAGATACTTGCCATATAAGTAAAGAAAGCGACTCAGACATAGGACGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATACTTGCCATATAAGTAAAGAAAGCGACTCAGACATAGGACGC  739

seq1  TTTACAAATAATGTACACATTTGTTAAAAACTAGACTGAATAGGTATATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATAATGTACACATTTGTTAAAAACTAGACTGAATAGGTATATC  789

seq1  TACAGAACACAGTTGTTTTGGTTACCTGTGGAATAGTTATAAAAAACAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACACAGTTGTTTTGGTTACCTGTGGAATAGTTATAAAAAACAGC  839

seq1  GTTTATAAACAGGTGTTAACAAGTTTTAAAAGGCTAAGATTGCACAAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAACAGGTGTTAACAAGTTTTAAAAGGCTAAGATTGCACAAGAG  889

seq1  GTGTCCCTCAGTTGCAGTGGAGTTAAGCTCTTCGTCAGTAACAGAAAGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTCAGTTGCAGTGGAGTTAAGCTCTTCGTCAGTAACAGAAAGAC  939

seq1  AAACATGAAATTCTTCTGCTTGTAAATTAAGAAACATTTAATAACTACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAATTCTTCTGCTTGTAAATTAAGAAACATTTAATAACTACTC  989

seq1  AATATTTAATATGTATGGCTATGTTACAAGTCTTGTTCTGAGAAACTGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAATATGTATGGCTATGTTACAAGTCTTGTTCTGAGAAACTGGA  1039

seq1  ATTC  1052
      ||||
seq2  ATTC  1043