BAC Information

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BAC

Clone NameB6Ng01-155P03
Chromosome15 (Build37)
Map Location 102,443,840 - 102,576,754
singlet/doubletdoublet
Overlap geneAtf7, LOC100043600, Atp5g2, Calcoco1
Upstream geneEG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff
Downstream geneLOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155P03.bB6Ng01-155P03.g
ACCDH950582DH950583
length1,2191,115
definitionDH950582|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P03, 5' end.DH950583|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,443,840 - 102,445,088)(102,575,630 - 102,576,754)
sequence
gaattcctggaaaccagtaagaaaatgcagagccaggtgtgatggatttg
atgataatcctaaatgaaggtggagccaagagaatcatgagttcaatgaa
aaactggaaacatagtgaaacccttcctcaaaaaaaaacaaaaccaaaca
aaacaggctgaagagacggttcacttgataaaggcatgttatggaagcat
atggactggagtgcagatccttagcacccacacaaaaccaggatgaggca
atagctgtctgtagccagagttctcagagcatggggaaggggtaagacca
acagatctctggagctcactggccagccagactagacaattggtgaattc
cagtttcagtgagacataatcttcctcaaaaaataaaggtaataaaggac
attaacctttggcctccgtatgcaaacacaggaatacaaacataatccac
atatacagacaaagcacacacacatacacacacacacacttcaaaacatg
caaacactttgttttgtacaggtatggcagcaataaataataaataaaat
ttgttttgttagccaggcagtggtggcgcacgcctttaatcccagcactt
gggaggcagaggcaggtggatttctgagttcgaggccagcctggtctaca
aagtgagttccaggacagccagagctacacagagaaaccctgtctcgaaa
aaaaacaaaacaaacaaacaaacaaacaaacaaaaaatttgttttttctg
attattttcagataaagtatgacccctaaaacaacagtgatcaacacagt
ttatttccttttttagatatttgtttattagtgtgtatctttttgtgaaa
gagcttcaagtatcccatgctggcctcaaattcattacataagcccaggc
tggcttcaaacttctaatcttcctacttctatcacccaagtactgggata
acaggcattactactacttggtgtagagaccaaacctagggctgtatgca
tgataagcatcactccaccaagtgagctgcatcctatgcctccccactcc
tgtttagataggttttgttatattcacagtctagtttactgcatcctctg
aagcatcagctccagtagctggaattatagcaagaactactggttcagtc
cagaacccgatcttaggaccattcaaattcttatggaatgaagaacaata
gaagcttttgtttggaggg
gaattcacttctcacgatgccttccgccgcatgtagccaaatgaaatact
cagaaagcaatggaaatattactcacacacgaccacgtggaaatacacaa
atgaacaaacacgctcagacatagctgaatgccagtcgcacacagatgga
aagacaggagcctggggcataaagccacatggcacaaagctacttggata
tgtatgcccctacacacacacacacacacacacacacacaactgcacacc
tatccagaaaattgtgcacaagtgccatctaacacatgtcagtgtgcctt
ccagaaggccccagttcctcttagaaatgggatcacccagcctgcctctt
gaacctgcctccattctatctattccagttctttgtacccagccaaaaag
aaaaaaagctgttcgctgcgctcacaatttgtccaccctcctcagaatgg
ccatagagaagtacttgtcattctgtttcatgcactattgggtttcttct
tccacaccccactcctaactctgctcttccagacagctttctcacatgaa
ctcgctagctctccttatacatttaccctagtcatttaccattttcagtc
tgatatatctaggggatcaccaagttacttgcacttgagtgtgctctaca
ccaacatggacggggttatgagccacccttggtggggatggataatcagg
acagggcagttcttgactatctgatgccacactgggggtgtgagcgctct
atgtttaacaggcagaagactggaatctccagcggcagctgcaaggtctc
ctgtcacatccgacaaggttcttcaaaatggcttttcagagctatgtgga
aggagggggcacatgcacacacatacacacacatggtgtctttccacatt
caccttgtacttaactggaaatattattccctgggctgggccttcactta
ttctcagccgtggttcctaacaacacttgactgttttcagaatttagatc
caccccttaaaggatacaatttgcctctggtgaaggactgctcagagcta
cactgcagcttaagcgatccctaagagaattgcaggatgaccagcgaccg
cagcagtaagtgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102443840_102445088
seq2: B6Ng01-155P03.b_47_1265

seq1  GAATTCCTGGAAACCAGTAAGAAAATGCAGAGCCAGGTGTGATGGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAACCAGTAAGAAAATGCAGAGCCAGGTGTGATGGATTTG  50

seq1  ATGATAATCCTAAATGAAGGTGGAGCCAAGAGAATCATGAGTTCAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATCCTAAATGAAGGTGGAGCCAAGAGAATCATGAGTTCAATGAA  100

seq1  AAACTGGAAACATAGTGAAACCCTTCCTCAAAAAAAAACAAAACCAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAACATAGTGAAACCCTTCCTCAAAAAAAAACAAAACCAAACA  150

seq1  AAACAGGCTGAAGAGACGGTTCACTTGATAAAGGCATGTTATGGAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTGAAGAGACGGTTCACTTGATAAAGGCATGTTATGGAAGCAT  200

seq1  ATGGACTGGAGTGCAGATCCTTAGCACCCACACAAAACCAGGATGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGGAGTGCAGATCCTTAGCACCCACACAAAACCAGGATGAGGCA  250

seq1  ATAGCTGTCTGTAGCCAGAGTTCTCAGAGCATGGGGAAGGGGTAAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTCTGTAGCCAGAGTTCTCAGAGCATGGGGAAGGGGTAAGACCA  300

seq1  ACAGATCTCTGGAGCTCACTGGCCAGCCAGACTAGACAATTGGTGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTCTGGAGCTCACTGGCCAGCCAGACTAGACAATTGGTGAATTC  350

seq1  CAGTTTCAGTGAGACATAATCTTCCTCAAAAAATAAAGGTAATAAAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAGTGAGACATAATCTTCCTCAAAAAATAAAGGTAATAAAGGAC  400

seq1  ATTAACCTTTGGCCTCCGTATGCAAACACAGGAATACAAACATAATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTTTGGCCTCCGTATGCAAACACAGGAATACAAACATAATCCAC  450

seq1  ATATACAGACAAAGCACACACACATACACACACACACACTTCAAAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGACAAAGCACACACACATACACACACACACACTTCAAAACATG  500

seq1  CAAACACTTTGTTTTGTACAGGTATGGCAGCAATAAATAATAAATAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTTTGTTTTGTACAGGTATGGCAGCAATAAATAATAAATAAAAT  550

seq1  TTGTTTTGTTAGCCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTAGCCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTT  600

seq1  GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  650

seq1  AAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAA  700

seq1  AAAAACAAAACAAACAAACAAACAAACAAACAAAAAATTTGTTTTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAACAAACAAACAAACAAACAAAAAATTTGTTTTTTCTG  750

seq1  ATTATTTTCAGATAAAGTATGACCCCTAAAACAACAGTGATCAACACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCAGATAAAGTATGACCCCTAAAACAACAGTGATCAACACAGT  800

seq1  TTATTTCCTTTTTTAGATATTTGTTTATTAGTGTGTATCTTTTTGTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTTTTTAGATATTTGTTTATTAGTGTGTATCTTTTTGTGAAA  850

seq1  GAGCTTCAAGTATCCCATGCTGGCCTCAAATTCATTACATAAGCCCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCAAGTATCCCATGCTGGCCTCAAATTCATTACATAAGCCCAGGC  900

seq1  TGGCTTCAAACTTCTAATCTTCCTACTTCTATCACCCAAGTACTGGGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCAAACTTCTAATCTTCCTACTTCTATCACCCAAGTACTGGGATA  950

seq1  ACAGGCATTACTACTACTTGGTGTTAGAGACCAAACCTAGGGCTGTATGC  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAGGCATTACTACTACTTGGTG-TAGAGACCAAACCTAGGGCTGTATGC  999

seq1  ATGATAAGCCATCACTCCACCAAGTGAGCTGCATTCCTAATGCCTCCCCC  1050
      |||||||| |||||||||||||||||||||||| |||| |||||| ||||
seq2  ATGATAAG-CATCACTCCACCAAGTGAGCTGCA-TCCT-ATGCCT-CCCC  1045

seq1  ACTCCCTGTTTAGATAAGGTTTTGTTATATTTCACAGTCTAGTCTTTAAC  1100
      ||| ||||||||||| ||||||||||||| ||||||||||||  ||||  
seq2  ACT-CCTGTTTAGAT-AGGTTTTGTTATA-TTCACAGTCTAG--TTTA--  1088

seq1  TTGCATTCCTCTTGAAGCATCAGCTTCCCAAGTAGCTGGGATTATAGGCA  1150
       |||| ||||| |||||||||||||   | ||||||||| |||||| |||
seq2  CTGCA-TCCTC-TGAAGCATCAGCT---CCAGTAGCTGGAATTATA-GCA  1132

seq1  TAGACTACTGTGTCAGGTTCAGAACACTGATCTTTAAGGACCAATTTAAA  1200
         |||||||  ||| || |||||| | ||||||  |||||||  || ||
seq2  AGAACTACTGGTTCA-GTCCAGAAC-CCGATCTT--AGGACCA--TTCAA  1176

seq1  ATTCTTATGGATTTAGAAAAGAACAAATAAGGATGTTTTTGTTT-GAGGG  1249
      ||||||||||| |     |||||| ||||  || | |||||||| |||||
seq2  ATTCTTATGGAAT----GAAGAAC-AATA--GAAGCTTTTGTTTGGAGGG  1219

seq1: chr15_102575630_102576754
seq2: B6Ng01-155P03.g_69_1183 (reverse)

seq1  TAGCACTTACACTGCTGCGGTCGCTGGGTCATTCCTGGCAATTCCTCTTT  50
      ||||||||  ||||||||||||||| ||||| |||| |||||| ||| ||
seq2  TAGCACTT--ACTGCTGCGGTCGCT-GGTCA-TCCT-GCAATT-CTC-TT  43

seq1  GGGGATCGCCTTAAAGCCTGCAGTGTAGCTCTGAGCAGTCTCTCACCAGA  100
       ||||||| |||||   |||||||||||||||||||||||  ||||||||
seq2  AGGGATCG-CTTAA--GCTGCAGTGTAGCTCTGAGCAGTCCTTCACCAGA  90

seq1  GGCAAATTTGTATCCTTT-AGGGGTGGATCTAAATTCTGAAAACAGTCAA  149
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  GGCAAA-TTGTATCCTTTAAGGGGTGGATCTAAATTCTGAAAACAGTCAA  139

seq1  GTGTTGTTAGGAACCACGGCTGGAGAATAAGGTGAAGGCCCAG-CCAGGG  198
      ||||||||||||||||||||| |||||||| |||||||||||| ||||||
seq2  GTGTTGTTAGGAACCACGGCT-GAGAATAA-GTGAAGGCCCAGCCCAGGG  187

seq1  AATAATATTTCCAGTTAAGTACAAGGTGAATGTGGAAAGACACCATGTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTTCCAGTTAAGTACAAGGTGAATGTGGAAAGACACCATGTGT  237

seq1  GTGTATGTGTGTGCATGTGCCCCCTCCTTCCACATAGCTCTGAAAAGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGCATGTGCCCCCTCCTTCCACATAGCTCTGAAAAGCCA  287

seq1  TTTTGAAGAACCTTGTCGGATGTGACAGGAGACCTTGCAGCTGCCGCTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGAACCTTGTCGGATGTGACAGGAGACCTTGCAGCTGCCGCTGG  337

seq1  AGATTCCAGTCTTCTGCCTGTTAAACATAGAGCGCTCACA-CCCCAGTGT  397
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGATTCCAGTCTTCTGCCTGTTAAACATAGAGCGCTCACACCCCCAGTGT  387

seq1  GGCATCAGATAGTCAAGAACTGCCCTGTCCTGATTATCCATCCCCACCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATAGTCAAGAACTGCCCTGTCCTGATTATCCATCCCCACCAA  437

seq1  GGGTGGCTCATAACCCCGTCCATGTTGGTGTAGAGCACACTCAAGTGCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTCATAACCCCGTCCATGTTGGTGTAGAGCACACTCAAGTGCAA  487

seq1  GTAACTTGGTGATCCCCTAGATATATCAGACTGAAAATGGTAAATGACTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGGTGATCCCCTAGATATATCAGACTGAAAATGGTAAATGACTA  537

seq1  GGGTAAATGTATAAGGAGAGCTAGCGAGTTCATGTGAGAAAGCTGTCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATGTATAAGGAGAGCTAGCGAGTTCATGTGAGAAAGCTGTCTGG  587

seq1  AAGAGCAGAGTTAGGAGTGGGGTGTGGAAGAAGAAACCCAATAGTGCATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGAGTTAGGAGTGGGGTGTGGAAGAAGAAACCCAATAGTGCATG  637

seq1  AAACAGAATGACAAGTACTTCTCTATGGCCATTCTGAGGAGGGTGGACAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATGACAAGTACTTCTCTATGGCCATTCTGAGGAGGGTGGACAA  687

seq1  ATTGTGAGCGCAGCGAACAGCTTTTTTTCTTTTTGGCTGGGTACAAAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGCGCAGCGAACAGCTTTTTTTCTTTTTGGCTGGGTACAAAGAA  737

seq1  CTGGAATAGATAGAATGGAGGCAGGTTCAAGAGGCAGGCTGGGTGATCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATAGATAGAATGGAGGCAGGTTCAAGAGGCAGGCTGGGTGATCCC  787

seq1  ATTTCTAAGAGGAACTGGGGCCTTCTGGAAGGCACACTGACATGTGTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAGAGGAACTGGGGCCTTCTGGAAGGCACACTGACATGTGTTAG  837

seq1  ATGGCACTTGTGCACAATTTTCTGGATAGGTGTGCAGTTGTGTGTGTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTTGTGCACAATTTTCTGGATAGGTGTGCAGTTGTGTGTGTGTG  887

seq1  TGTGTGTGTGTGTGTGTAGGGGCATACATATCCAAGTAGCTTTGTGCCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTAGGGGCATACATATCCAAGTAGCTTTGTGCCAT  937

seq1  GTGGCTTTATGCCCCAGGCTCCTGTCTTTCCATCTGTGTGCGACTGGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTATGCCCCAGGCTCCTGTCTTTCCATCTGTGTGCGACTGGCAT  987

seq1  TCAGCTATGTCTGAGCGTGTTTGTTCATTTGTGTATTTCCACGTGGTCGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATGTCTGAGCGTGTTTGTTCATTTGTGTATTTCCACGTGGTCGT  1037

seq1  GTGTGAGTAATATTTCCATTGCTTTCTGAGTATTTCATTTGGCTACATGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTAATATTTCCATTGCTTTCTGAGTATTTCATTTGGCTACATGC  1087

seq1  GGCGGAAGGCATCGTGAGAAGTGAATTC  1125
      ||||||||||||||||||||||||||||
seq2  GGCGGAAGGCATCGTGAGAAGTGAATTC  1115