BAC Information

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BAC

Clone NameB6Ng01-156H01
Chromosome15 (Build37)
Map Location 20,494,728 - 20,623,053
singlet/doubletdoublet
Overlap geneAcot10, LOC100040302
Upstream geneLOC621884, LOC100040265
Downstream geneCdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156H01.bB6Ng01-156H01.g
ACCDH950944DH950945
length1,1561,083
definitionDH950944|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H01, 5' end.DH950945|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,494,728 - 20,495,889)(20,621,962 - 20,623,053)
sequence
gaattccagtagaataatttgaaaactcatgtgcaaatgtgatcagtata
ttttgccttgagacattgttgcagagtctgtcattattgagcaaaattgg
tatatagaactagccttataggtaaagtgtgactttgtaaacacgcattt
ttaatgttatttaacatatattaaaatatgaattaccatactagtttggg
cttatatatgtaggtaattattacttcctacagtttgtgttagttcaagc
aaggaaaagtatattattatattctgtttaatactcttaaataaaatgaa
agacatgttttctcaactttatagcataacaaatgaaagaaaatctataa
aaatcatttttaggttttaatttcttttctttgaggcatacatagactac
aggtgccaacgattgaagcatttgaggcaaaattctccctctctggtaat
ggctggactggaagtcattctgtagactttgtaggccattaaaccaacaa
gagatctctctacctctatgtcctgagtgttgtgtttaaagatatatgac
accatgcctaatactattgaatattgttctgttttataaattcatataat
attaggtttcatatatttttaaaacgtaaaacattttaggaggaggacaa
ctcccaatgacataagtatgttaagctaaatttattatacctctaccagt
gtgataaaatactaacgtgattatgttccttagaatataaatataaccat
tggtgcatttagtattaatattgtatttttttcatgaacctacattcagg
taattttatgatattcacatgccgaaaaatgtcataagctaatagtttac
aggttttgtacagaaaaactaaatttgggcccatgttaaaggaggtcacc
agcactaagcaaatctataaagcaaagtccacagacacttgtagttctat
tagagaaggttgtttgctcacatgatgacatttatcagatttactattta
cagaatatttctgagcaaacagtaaatgattaattggaactcttatcttc
ttagagagaattttgtggagaaacagctgagttcattgacgacatgacca
gttctcagggcttgatcatgtaactgtatggtcgtaaaataaagatagct
tggctt
gaattcttctgagatatctatttactaaactctccaaggttaaagggaaa
caattactgacaaccaacactgatgaaatcctgtattgtaagggatattt
taatgactacctgcaatgcaatttcatccttactttcctatcttagcttt
gcatctcctattgactttccttttccttactgagcaggtgaatgggttga
gatgttgagcaatcctcagaggtaataaaaaaaaaaagtaaatcagttta
atttgcaatgccgttatgaagcttcactattgatgcttaaatcaaattaa
agtaaggtcacagaaatacttcgctctcctagcattaaaaaggggcaagg
tatattgaaagagactgaaatatctaataatattaagacttcatgaaatt
gatctagcttttaatggcaactctctatcgttttctcagtccttagtctc
tattgaaataactctgatgtgagaagtcagacaatttaacgttaatgtct
acttactatgttgatttatattctatagtttccaactgagctctagaaac
tggtgtgatctaagtatcattgattcaaacaaacatttccttttattgaa
agcatcatcattcaatgaactagtaaaatggctcatacaaacagaaaaca
aatacattaaatcgacctatgctttcccataagacatcatttgagcacta
atatccattttcaagaacactaagtttcgttcaatgcaatattgttggca
acatcatgctcataacttactggacaaattctaaataattttgtaaacaa
ggagtaaagggctaagttcttgccagaagagttaaagctgaaaaattaaa
aatttcaaggtttaaagagcttctacaaggttgtaaaataaaatggagca
atcaagaaacaacatttttcttcaactacaaaagcttctgcttcttttaa
acaaagcaaaagctttccttctgagaagctatgtttacaacacacattct
tgatccttcttgtagagcagagaatacatgcaataaaactacttgaaata
tatcatctgacatactataattgtgcagagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20494728_20495889
seq2: B6Ng01-156H01.b_41_1196

seq1  GAATTCCAGTAGAATAATTTGAAAACTCATGTGCAAATGTGATCAGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAGAATAATTTGAAAACTCATGTGCAAATGTGATCAGTATA  50

seq1  TTTTGCCTTGAGACATTGTTGCAGAGTCTGTCATTATTGAGCAAAATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTTGAGACATTGTTGCAGAGTCTGTCATTATTGAGCAAAATTGG  100

seq1  TATATAGAACTAGCCTTATAGGTAAAGTGTGACTTTGTAAACACGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAACTAGCCTTATAGGTAAAGTGTGACTTTGTAAACACGCATTT  150

seq1  TTAATGTTATTTAACATATATTAAAATATGAATTACCATACTAGTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTATTTAACATATATTAAAATATGAATTACCATACTAGTTTGGG  200

seq1  CTTATATATGTAGGTAATTATTACTTCCTACAGTTTGTGTTAGTTCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATATGTAGGTAATTATTACTTCCTACAGTTTGTGTTAGTTCAAGC  250

seq1  AAGGAAAAGTATATTATTATATTCTGTTTAATACTCTTAAATAAAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGTATATTATTATATTCTGTTTAATACTCTTAAATAAAATGAA  300

seq1  AGACATGTTTTCTCAACTTTATAGCATAACAAATGAAAGAAAATCTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTTTTCTCAACTTTATAGCATAACAAATGAAAGAAAATCTATAA  350

seq1  AAATCATTTTTAGGTTTTAATTTCTTTTCTTTGAGGCATACATAGACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTTTAGGTTTTAATTTCTTTTCTTTGAGGCATACATAGACTAC  400

seq1  AGGTGCCAACGATTGAAGCATTTGAGGCAAAATTCTCCCTCTCTGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAACGATTGAAGCATTTGAGGCAAAATTCTCCCTCTCTGGTAAT  450

seq1  GGCTGGACTGGAAGTCATTCTGTAGACTTTGTAGGCCATTAAACCAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGACTGGAAGTCATTCTGTAGACTTTGTAGGCCATTAAACCAACAA  500

seq1  GAGATCTCTCTACCTCTATGTCCTGAGTGTTGTGTTTAAAGATATATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCTCTACCTCTATGTCCTGAGTGTTGTGTTTAAAGATATATGAC  550

seq1  ACCATGCCTAATACTATTGAATATTGTTCTGTTTTATAAATTCATATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTAATACTATTGAATATTGTTCTGTTTTATAAATTCATATAAT  600

seq1  ATTAGGTTTCATATATTTTTAAAACGTAAAACATTTTAGGAGGAGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTTCATATATTTTTAAAACGTAAAACATTTTAGGAGGAGGACAA  650

seq1  CTCCCAATGACATAAGTATGTTAAGCTAAATTTATTATACCTCTACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATGACATAAGTATGTTAAGCTAAATTTATTATACCTCTACCAGT  700

seq1  GTGATAAAATACTAACGTGATTATGTTCCTTAGAATATAAATATAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAAATACTAACGTGATTATGTTCCTTAGAATATAAATATAACCAT  750

seq1  TGGTGCATTTAGTATTAATATTGTATTTTTTTCATGAACCTACATTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTTAGTATTAATATTGTATTTTTTTCATGAACCTACATTCAGG  800

seq1  TAATTTTATGATATTCACATGCCGAAAAATGTCATAAGCTAATAGTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATGATATTCACATGCCGAAAAATGTCATAAGCTAATAGTTTAC  850

seq1  AGGTTTTGTACAGAAAAACTAAATTTGGGCCCATGTTAAAGGAGGTCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGTACAGAAAAACTAAATTTGGGCCCATGTTAAAGGAGGTCACC  900

seq1  AGCACTAAGCAAATCTATAAAGCAAAGTCCACAGACACTTGTAGTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAAGCAAATCTATAAAGCAAAGTCCACAGACACTTGTAGTTCTAT  950

seq1  TAGAGAAGGTTGTTTGCTCACATGAATGAACAATTTATCAAGATTTAACT  1000
      |||||||||||||||||||||||| ||||   ||||||| |||||| |||
seq2  TAGAGAAGGTTGTTTGCTCACATG-ATGA--CATTTATC-AGATTT-ACT  995

seq1  ATTTACAG-ATATTTCCTGAAGCAAACAGTAAATGATTAATTGGAACTCT  1049
      |||||||| |||||| ||| ||||||||||||||||||||||||||||||
seq2  ATTTACAGAATATTT-CTG-AGCAAACAGTAAATGATTAATTGGAACTCT  1043

seq1  TATCTTCTTAGAAGAGAA-TCTGTGGAGAAAACAGCTGAGTCCATTTGAC  1098
      ||||||||||| |||||| | ||||||| |||||||||||| || |||| 
seq2  TATCTTCTTAG-AGAGAATTTTGTGGAG-AAACAGCTGAGTTCA-TTGA-  1089

seq1  CGACATGACCAAGTTCTCA-GGCCTGATCATGTACCTGTAT-GTCGTAAA  1146
      |||||||||| |||||||| ||| |||||||||| |||||| ||||||||
seq2  CGACATGACC-AGTTCTCAGGGCTTGATCATGTAACTGTATGGTCGTAAA  1138

seq1  AT-AAGATAGC-TGGCTT  1162
      || |||||||| ||||||
seq2  ATAAAGATAGCTTGGCTT  1156

seq1: chr15_20621962_20623053
seq2: B6Ng01-156H01.g_67_1149 (reverse)

seq1  TATCTCTTGCACCATTTATAGTAATGTCAAGAATGATATATTTCAAGTAG  50
      |||||| |||| || ||||||| ||||||   ||||||||||||||||||
seq2  TATCTC-TGCA-CAATTATAGT-ATGTCA--GATGATATATTTCAAGTAG  45

seq1  TTTTATTTCCATGTATTCTCTGCTCTACAAGAAGGATCAAGAATGTGTGT  100
      ||||| || |||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTA-TTGCATGTATTCTCTGCTCTACAAGAAGGATCAAGAATGTGTG-  93

seq1  TTGTAAACATAGC-TCTCAGAAGGAAAGCTTTTGCTTTGTTTAAAAGAAG  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACATAGCTTCTCAGAAGGAAAGCTTTTGCTTTGTTTAAAAGAAG  143

seq1  CAGAAGCTTTTGTAGTTGAAGGAAGATGTTTGTTTCTTTGATTGCTCCAT  199
      ||||||||||||||||||||| || ||| ||||||| |||||||||||||
seq2  CAGAAGCTTTTGTAGTTGAAGAAAAATG-TTGTTTC-TTGATTGCTCCAT  191

seq1  TTTATTTTACAACCTTGTAGAAGCTCTTTAAACCTTGAAATTTTTAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACAACCTTGTAGAAGCTCTTTAAACCTTGAAATTTTTAATTT  241

seq1  TTCAGCTTTAAACTCTTCTGGCAAGAACTTAGCCC-TTACTCCTTTGTTT  298
      ||||||||| ||||||||||||||||||||||||| ||||||| ||||||
seq2  TTCAGCTTT-AACTCTTCTGGCAAGAACTTAGCCCTTTACTCC-TTGTTT  289

seq1  ACAAAATTATTTAGAATTTGTCCAGTAAGTTATGAGCATGATGTTGCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTATTTAGAATTTGTCCAGTAAGTTATGAGCATGATGTTGCCAA  339

seq1  CAATATTGCATTGAACGAAACTTAGTGTTCTTGAAAATGGATATTAGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGCATTGAACGAAACTTAGTGTTCTTGAAAATGGATATTAGTGC  389

seq1  TCAAATGATGTCTTATGGGAAAGCATAGGTCGATTTAATGTATTTGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGATGTCTTATGGGAAAGCATAGGTCGATTTAATGTATTTGTTTT  439

seq1  CTGTTTGTATGAGCCATTTTACTAGTTCATTGAATGATGATGCTTTCAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTATGAGCCATTTTACTAGTTCATTGAATGATGATGCTTTCAAT  489

seq1  AAAAGGAAATGTTTGTTTGAATCAATGATACTTAGATCACACCAGTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAATGTTTGTTTGAATCAATGATACTTAGATCACACCAGTTTCT  539

seq1  AGAGCTCAGTTGGAAACTATAGAATATAAATCAACATAGTAAGTAGACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGTTGGAAACTATAGAATATAAATCAACATAGTAAGTAGACAT  589

seq1  TAACGTTAAATTGTCTGACTTCTCACATCAGAGTTATTTCAATAGAGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTAAATTGTCTGACTTCTCACATCAGAGTTATTTCAATAGAGACT  639

seq1  AAGGACTGAGAAAACGATAGAGAGTTGCCATTAAAAGCTAGATCAATTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGAGAAAACGATAGAGAGTTGCCATTAAAAGCTAGATCAATTTC  689

seq1  ATGAAGTCTTAATATTATTAGATATTTCAGTCTCTTTCAATATACCTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCTTAATATTATTAGATATTTCAGTCTCTTTCAATATACCTTGC  739

seq1  CCCTTTTTAATGCTAGGAGAGCGAAGTATTTCTGTGACCTTACTTTAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTAATGCTAGGAGAGCGAAGTATTTCTGTGACCTTACTTTAATT  789

seq1  TGATTTAAGCATCAATAGTGAAGCTTCATAACGGCATTGCAAATTAAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAGCATCAATAGTGAAGCTTCATAACGGCATTGCAAATTAAACT  839

seq1  GATTTACTTTTTTTTTTTATTACCTCTGAGGATTGCTCAACATCTCAACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTTTTTTTTTTTATTACCTCTGAGGATTGCTCAACATCTCAACC  889

seq1  CATTCACCTGCTCAGTAAGGAAAAGGAAAGTCAATAGGAGATGCAAAGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACCTGCTCAGTAAGGAAAAGGAAAGTCAATAGGAGATGCAAAGCT  939

seq1  AAGATAGGAAAGTAAGGATGAAATTGCATTGCAGGTAGTCATTAAAATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGAAAGTAAGGATGAAATTGCATTGCAGGTAGTCATTAAAATAT  989

seq1  CCCTTACAATACAGGATTTCATCAGTGTTGGTTGTCAGTAATTGTTTCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACAATACAGGATTTCATCAGTGTTGGTTGTCAGTAATTGTTTCCC  1039

seq1  TTTAACCTTGGAGAGTTTAGTAAATAGATATCTCAGAAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTTGGAGAGTTTAGTAAATAGATATCTCAGAAGAATTC  1083