BAC Information

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BAC

Clone NameB6Ng01-159H19
Chromosome15 (Build37)
Map Location 71,186,538 - 71,346,449
singlet/doubletdoublet
Overlap gene1700010C24Rik
Upstream geneLOC383051
Downstream geneLOC100040847, Col22a1, Kcnk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H19.bB6Ng01-159H19.g
ACCDH953138DH953139
length1,096976
definitionDH953138|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H19, 5' end.DH953139|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,345,354 - 71,346,449)(71,186,538 - 71,187,537)
sequence
gaattccaagtttctgggctaatatccacttatcagtgagtgcatatcat
gtgagttcttttgtgattgggttacctcactcaggatgagttctttggtg
attgggttacctaccctccagatccatccatttgcataagaatttcataa
attcattgtttttaatagctgagtagtactccattgtgtaaatgtacgat
attttctgtatccattcctctgttgagggacatttcggttctttccagct
tctggctattataaacaaggctgctatgaacatagtggagcatctcactg
gcttctaaatagataaaatgatgcaccctgtagtgctccagagcagagtt
tgggagaaaattccctaagaaaaattatatatatacatatagtctacata
attaaatcagtctaagtccaacaattattactgtgctgtgctgtatgtga
gagttttgttcttggctgcagtattaaactcctgtgtgactttgaacctg
tcatttgtcttctctagttctatttcccagcaagcagaaaaaaaaaaaaa
ctgaatcttccaggaaaacatcttcagggcttctctgctctgtttagtgt
tgtatctctgtcactgccaaaagcagtgggacagttgagacatacttgag
cgcgcgcgcgcgcacacacacacacacacacacacacacacacacacaca
cacaccccatcactaacaccatcaccacaaagccttccatgtcactagaa
gtgtggtgctggtcattttagtttacatctatggtcatctgctccccctt
acagtacccagtgaaggcacggaggcctctagatgatttaatagatgcaa
tggtcagctaatatttctttttagaaataaagactctagatacaaagaag
ttaagatacacatcctgctctgtccctcctcacaccatactattaggcag
cagctaagccgaacctttaattgaatgacatcttatcatttcccagttgc
cctctgactccaggagattgaatttcagaataatatacatctggtagatg
ttcttatgactcagttcctctgtggcaagccttggtttcctcttta
gaattcttcccacttttcgggctgtatcctttacatcatagatatgaatt
caaccttcccaaatcacatttctgtagcctgtcaaatgatattaggttga
taatgtgagttctagctggaaggagggtgagaagccactgtgttctcata
gatagtcctggtgctgatgaaataaccatgagcagaggtgtttgaaccag
attataagaatcatgttcttttcacattggtgtgtgtctcaaaggaaagg
actttaaagagtggaagagatcttagaagtaatgtgtcctgaggtcatct
agacaggaagcaacactgccaagatcagagtccagctctctctcgaggct
acttcagtgaagctgatgccccaacagagcttccctccctgtgggcactg
agtctctctcagaaccaagatcactagccaggactcatttgcccctgcaa
gctcattagagcactcaagctaccaacaactctctttgatttctggaacc
caagaactaccaaatgaactgctttgaagtttggtttccaccttcctttg
aaagggatgatttaagtggagtgacttggatcaaggaggtcagaagggag
attgaagcacactctttagtggcaagtttctagagacagagagaggtgag
attgcttctactggggaaaagatgtgaggtatgggccagccttatctgga
aaggcattcaccaaagaatgctgctactttagagtagggagatatgcctt
gaaagaaaaataaaatataatttaaatctcttccctcctttcctgtccac
tctccaaacttttctatgtcccatctctacattcctcccttgcctcacaa
tgcactctcagactgatatctcctatatatatgtgtcctgtgtatattgc
tgtgtcaatattattttaaatagcgttaatggatcatatagttgctttat
gaaaagaaatataagagatgcctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_71345354_71346449
seq2: B6Ng01-159H19.b_48_1143 (reverse)

seq1  TAAAGAGAGAAACAAGGCTTG-CACAGGGGAACTGAGTCAATAGAACATC  49
      |||||||  || ||||||||| ||||| ||||||||||||  ||||||||
seq2  TAAAGAGGAAACCAAGGCTTGCCACAGAGGAACTGAGTCATAAGAACATC  50

seq1  TA-CAGATGTATATTA-TCTGAAAATCCATTCTCCTGGAGTCAGAGGGCA  97
      || ||||||||||||| |||| |||| || ||||||||||||||||||||
seq2  TACCAGATGTATATTATTCTG-AAATTCAATCTCCTGGAGTCAGAGGGCA  99

seq1  ACTGGGAAATGATAAGATGTTCATTCAATTAAAGGTTCGGCTTAGCTGCT  147
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGGGAAATGATAAGATG-TCATTCAATTAAAGGTTCGGCTTAGCTGCT  148

seq1  GCCTAATAGTATGGTGTGAGGAGGGACAGGGCAGGATGTGTATCTTAACT  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCTAATAGTATGGTGTGAGGAGGGACAGAGCAGGATGTGTATCTTAACT  198

seq1  TCTTTGTATCTTAGAGTCTTTATCTCTAAAAAGAAATATTAGCTGACCAT  247
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  TCTTTGTATC-TAGAGTCTTTATTTCTAAAAAGAAATATTAGCTGACCAT  247

seq1  TGCATCTATTAAATCATCTAGAGGCCTCCGTGCCTTCACTGGGTACTGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTATTAAATCATCTAGAGGCCTCCGTGCCTTCACTGGGTACTGTA  297

seq1  AGGGGGAGCAGATGACCATAGATGTAAACTAAAATGACCAGCACCACACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGCAGATGACCATAGATGTAAACTAAAATGACCAGCACCACACT  347

seq1  TCTAGTGACATGGAAGGCTTTGTGGTGATGGTGTTAGTGATGGGGTGTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGACATGGAAGGCTTTGTGGTGATGGTGTTAGTGATGGGGTGTGT  397

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGC  447

seq1  TCAAGTATGTCTCAACTGTCCCACTGCTTTTGGCAGTGACAGAGATACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATGTCTCAACTGTCCCACTGCTTTTGGCAGTGACAGAGATACAA  497

seq1  CACTAAACAGAGCAGAGAAGCCCTGAAGATGTTTTCCTGGAAGATTCAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACAGAGCAGAGAAGCCCTGAAGATGTTTTCCTGGAAGATTCAGT  547

seq1  TTTTTTTTTTTTCTGCTTGCTGGGAAATAGAACTAGAGAAGACAAATGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCTGCTTGCTGGGAAATAGAACTAGAGAAGACAAATGAC  597

seq1  AGGTTCAAAGTCACACAGGAGTTTAATACTGCAGCCAAGAACAAAACTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAAAGTCACACAGGAGTTTAATACTGCAGCCAAGAACAAAACTCT  647

seq1  CACATACAGCACAGCACAGTAATAATTGTTGGACTTAGACTGATTTAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGCACAGCACAGTAATAATTGTTGGACTTAGACTGATTTAATT  697

seq1  ATGTAGACTATATGTATATATATAATTTTTCTTAGGGAATTTTCTCCCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACTATATGTATATATATAATTTTTCTTAGGGAATTTTCTCCCAA  747

seq1  ACTCTGCTCTGGAGCACTACAGGGTGCATCATTTTATCTATTTAGAAGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTCTGGAGCACTACAGGGTGCATCATTTTATCTATTTAGAAGCC  797

seq1  AGTGAGATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAA  847

seq1  GCTGGAAAGAACCGAAATGTCCCTCAACAGAGGAATGGATACAGAAAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAAGAACCGAAATGTCCCTCAACAGAGGAATGGATACAGAAAATA  897

seq1  TCGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATT  947

seq1  TATGAAATTCTTATGCAAATGGATGGATCTGGAGGGTAGGTAACCCAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTCTTATGCAAATGGATGGATCTGGAGGGTAGGTAACCCAATC  997

seq1  ACCAAAGAACTCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAACTCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACA  1047

seq1  TGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTGGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTGGAATTC  1096

seq1: chr15_71186538_71187537
seq2: B6Ng01-159H19.g_66_1041

seq1  GAATTCTTCCCACTTTTCGGGCTGTATCCTTTACATCATAGATATGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCACTTTTCGGGCTGTATCCTTTACATCATAGATATGAATT  50

seq1  CAACCTTCCCAAATCACATTTCTGTAGCCTGTCAAATGATATTAGGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTCCCAAATCACATTTCTGTAGCCTGTCAAATGATATTAGGTTGA  100

seq1  TAATGTGAGTTCTAGCTGGAAGGAGGGTGAGAAGCCACTGTGTTCTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGAGTTCTAGCTGGAAGGAGGGTGAGAAGCCACTGTGTTCTCATA  150

seq1  GATAGTCCTGGTGCTGATGAAATAACCATGAGCAGAGGTGTTTGAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCCTGGTGCTGATGAAATAACCATGAGCAGAGGTGTTTGAACCAG  200

seq1  ATTATAAGAATCATGTTCTTTTCACATTGGTGTGTGTCTCAAAGGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGAATCATGTTCTTTTCACATTGGTGTGTGTCTCAAAGGAAAGG  250

seq1  ACTTTAAAGAGTGGAAGAGATCTTAGAAGTAATGTGTCCTGAGGTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGAGTGGAAGAGATCTTAGAAGTAATGTGTCCTGAGGTCATCT  300

seq1  AGACAGGAAGCAACACTGCCAAGATCAGAGTCCAGCTCTCTCTCGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAGCAACACTGCCAAGATCAGAGTCCAGCTCTCTCTCGAGGCT  350

seq1  ACTTCAGTGAAGCTGATGCCCCAACAGAGCTTCCCTCCCTGTGGGCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTGAAGCTGATGCCCCAACAGAGCTTCCCTCCCTGTGGGCACTG  400

seq1  AGTCTCTCTCAGAACCAAGATCACTAGCCAGGACTCATTTGCCCCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCTCAGAACCAAGATCACTAGCCAGGACTCATTTGCCCCTGCAA  450

seq1  GCTCATTAGAGCACTCAAGCTACCAACAACTCTCTTTGATTTCTGGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTAGAGCACTCAAGCTACCAACAACTCTCTTTGATTTCTGGAACC  500

seq1  CAAGAACTACCAAATGAACTGCTTTGAAGTTTGGTTTCCACCTTCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTACCAAATGAACTGCTTTGAAGTTTGGTTTCCACCTTCCTTTG  550

seq1  AAAGGGATGATTTAAGTGGAGTGACTTGGATCAAGGAGGTCAGAAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATGATTTAAGTGGAGTGACTTGGATCAAGGAGGTCAGAAGGGAG  600

seq1  ATTGAAGCACACTCTTTAGTGGCAAGTTTCTAGAGACAGAGAGAGGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCACACTCTTTAGTGGCAAGTTTCTAGAGACAGAGAGAGGTGAG  650

seq1  ATTGCTTCTACTGGGGAAAAGATGTGAGGTATGGGCCAGCCTTATCTGG-  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTGCTTCTACTGGGGAAAAGATGTGAGGTATGGGCCAGCCTTATCTGGA  700

seq1  AAGGCATTCACCAAAGAATGCTGCTACTTTAGAGTAGGGAGATATGCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTCACCAAAGAATGCTGCTACTTTAGAGTAGGGAGATATGCCTT  750

seq1  GAAAGAAAAATAAAATATAA-TTAAATCTCTTCCCTCCTTTCCTGTCCAC  798
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAAGAAAAATAAAATATAATTTAAATCTCTTCCCTCCTTTCCTGTCCAC  800

seq1  TCTCCAAACTTTTCTATGTCCCATCTCTACAATTCCTCCCTTGCCTCACA  848
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTCCAAACTTTTCTATGTCCCATCTCTAC-ATTCCTCCCTTGCCTCACA  849

seq1  ATGCACTCTCAGACTGATAATCTCCTTATATTATTATTGTTGTTCTTGTT  898
      |||||||||||||||||| |||||| ||||    |||   ||| |    |
seq2  ATGCACTCTCAGACTGAT-ATCTCC-TATA----TATATGTGTCC----T  889

seq1  GTTATTATTTGCTGTTGTTAAATAATTTATTTTAAATAGCGTTTAAATGG  948
      ||   || |||||||   | ||||  |||||||||||||||||  |||||
seq2  GTGTATA-TTGCTGT--GTCAATA--TTATTTTAAATAGCGTT--AATGG  932

seq1  AATCCATATAGTTTGCTTTATTGAAAAGAAAATATAGGAAGGAATGCCTG  998
      |   ||||||| |||||||| ||||||| ||||||   |||  |||||||
seq2  A--TCATATAG-TTGCTTTA-TGAAAAG-AAATAT---AAGAGATGCCTG  974

seq1  TT  1000
      ||
seq2  TT  976