BAC Information

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BAC

Clone NameB6Ng01-160C06
Chromosome15 (Build37)
Map Location 13,952,553 - 14,146,320
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh6, LOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024, LOC100040033
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160C06.bB6Ng01-160C06.g
ACCDH953596DH953597
length971974
definitionDH953596|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C06, 5' end.DH953597|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,952,553 - 13,953,466)(14,145,343 - 14,146,320)
sequence
gaattcacagtagatttcgttcaagaagcacataagtccatactaatcag
aaggaagcatagacaaatcccaatgtgaaacattctacagaacagctgac
caatattcttcaaggttataaaaaaacaaagaaagtccaaaaaatgatgc
agagaagaggtgtttaaggagataagcaaaataaatagaatgtggcattc
tggactagaataaagcattagagatgtagagggggaaaaaaaagcaagac
aactgtggacagtatttaggataatggttctaaattgttcattattggta
atgaacaatgtatattcctagatgatgtcattataggacagatggaaaga
actgcaggtgtcctctctagaccctcttttacatgtctttaaatctaaac
tgtctacagttgtctttattccttttttcctagatattttctttatttac
gttaaaaatgttatcccctttcctgttttccccactgaaaaccccgtacc
ccctccctgctccccctgttcaacaactcacccactcctgcttcctggcc
ctggcattcccctgtactggggcatagaaccttcacaggactaagggtct
ctcctcccactgatgacagactaggccattctctgcaacatatgcagcta
gagccatgagcaccatcatgtgttttctttagttggtggtttagtcccag
ggtgttttctttagttgctggagtagtctgagggaactatttagttcata
ttgttggtcctccgatggggctgcaaaccccttaagctctttgggtcctt
tctctagctccttcattggggaccctgtgctttgttcaatggatagctgt
gagcatccacttctgtatttgtcaggaactgtcagcaagctcttgttggc
atccacatagtgtctggtttgggggattgtttatgggatggatcccagat
ggctggaaagacccaggtgtc
gaattcaacagccttaaatactattatcaaagctcgtgcttttgtgctta
gtctctttagttctgtgtttaccataatagctgatataaggttaggtaat
taaaaatcagcaatgatagtattagaaatcaatgtagatacatgaaaaat
atcctaacagaataaaggatctatgatcctttctacatgttctctttgta
tcaatatattctttattgttttttttacatctatgtggaattaatccttt
tgcaaagaaagattactttctataagaggtgattaagaggagaagccatt
tccttaaaagatagggaaattttgcaagaagaaaacttgactttccagag
agccacatggagctttattagtgtctggtaacacagagcatgtacaacct
catcactttctaccgaagccaaaagaggaaagaaggcaatatttaccagt
ttctcacagtaattctctgtgaagtgtatgtaattaatatatatatatat
atatatatatatatatatatatatatgtaagcaaatttacttattttaaa
atattaaaaaaaaagaaaagttgggcggtggtgtctcacgcctttaatcc
cagcatttgggaggcagaggctggcagatttctgagttccaggacagcct
ggtctacagagtgagttccaggacagccaggactgtacagagaaaccctg
tctcgaaacaccaaaataaaataaaataaaataaaataaaataaataaaa
taaataaataaaatatcaataaacacagtaatgctctctgaggtatttgc
tgtatggcattgtcttagtgtttattgctgtaaagagataccatgaccaa
aggcagcttttatgatggaaaacatttcattgggactggcttacagtttt
cagagttttgtcaattgccataatggcatgaagcatgaagcctcatgcag
aaggaaattatttcataaccggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13952553_13953466
seq2: B6Ng01-160C06.b_44_956

seq1  GAATTCACAGTAGATTTCGTTCAAGAAGCACATAAGTCCATACTAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAGATTTCGTTCAAGAAGCACATAAGTCCATACTAATCAG  50

seq1  AAGGAAGCATAGACAAATCCCAATGTGAAACATTCTACAGAACAGCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCATAGACAAATCCCAATGTGAAACATTCTACAGAACAGCTGAC  100

seq1  CAATATTCTTCAAGGTTATAAAAAAACAAAGAAAGTCCAAAAAATGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCTTCAAGGTTATAAAAAAACAAAGAAAGTCCAAAAAATGATGC  150

seq1  AGAGAAGAGGTGTTTAAGGAGATAAGCAAAATAAATAGAATGTGGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGTGTTTAAGGAGATAAGCAAAATAAATAGAATGTGGCATTC  200

seq1  TGGACTAGAATAAAGCATTAGAGATGTAGAGGGGGAAAAAAAAGCAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAGAATAAAGCATTAGAGATGTAGAGGGGGAAAAAAAAGCAAGAC  250

seq1  AACTGTGGACAGTATTTAGGATAATGGTTCTAAATTGTTCATTATTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGACAGTATTTAGGATAATGGTTCTAAATTGTTCATTATTGGTA  300

seq1  ATGAACAATGTATATTCCTAGATGATGTCATTATAGGACAGATGGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAATGTATATTCCTAGATGATGTCATTATAGGACAGATGGAAAGA  350

seq1  ACTGCAGGTGTCCTCTCTAGACCCTCTTTTACATGTCTTTAAATCTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGTGTCCTCTCTAGACCCTCTTTTACATGTCTTTAAATCTAAAC  400

seq1  TGTCTACAGTTGTCTTTATTCCTTTTTTCCTAGATATTTTCTTTATTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAGTTGTCTTTATTCCTTTTTTCCTAGATATTTTCTTTATTTAC  450

seq1  GTTAAAAATGTTATCCCCTTTCCTGTTTTCCCCACTGAAAACCCCGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAATGTTATCCCCTTTCCTGTTTTCCCCACTGAAAACCCCGTACC  500

seq1  CCCTCCCTGCTCCCCCTGTTCAACAACTCACCCACTCCTGCTTCCTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTGCTCCCCCTGTTCAACAACTCACCCACTCCTGCTTCCTGGCC  550

seq1  CTGGCATTCCCCTGTACTGGGGCATAGAACCTTCACAGGACTAAGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTCCCCTGTACTGGGGCATAGAACCTTCACAGGACTAAGGGTCT  600

seq1  CTCCTCCCACTGATGACAGACTAGGCCATTCTCTGCAACATATGCAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCACTGATGACAGACTAGGCCATTCTCTGCAACATATGCAGCTA  650

seq1  GAGCCATGAGCACCATCATGTGTTTTCTTTAGTTGGTGGTTTAGTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGAGCACCATCATGTGTTTTCTTTAGTTGGTGGTTTAGTCCCAG  700

seq1  GGTGTTTTCTTTAGTTGCTGGAGTAGTCTGAGGGAACTATTTAGTTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTCTTTAGTTGCTGGAGTAGTCTGAGGGAACTATTTAGTTCATA  750

seq1  TTGTTGGTCCTCCGATGGGGCTGCAAACCCCTTAAGCTCTTTGGGTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTCCTCCGATGGGGCTGCAAACCCCTTAAGCTCTTTGGGTCCTT  800

seq1  TCTCTAGCTCCTTCATTGGGGACCCTGTGCTTTGTTCAATGGATAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGCTCCTTCATTGGGGACCCTGTGCTTTGTTCAATGGATAGCTGT  850

seq1  GAGCATCCACTTCTGTATTTGTCAGGAACTGTCAGCAAGCTCTTGTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCACTTCTGTATTTGTCAGGAACTGTCAGCAAGCTCTTGTTGGC  900

seq1  ATCCACAATAGTGT  914
      |||||| |||||||
seq2  ATCCAC-ATAGTGT  913

seq1: chr15_14145343_14146320
seq2: B6Ng01-160C06.g_66_1039 (reverse)

seq1  GGCCGG-TATGATATAATTTCCTTCTGCATGAAGGCTTCCATGCTTCCTG  49
      |||||| ||||| |||||||||||||||||| |||||| |||||||| ||
seq2  GGCCGGTTATGAAATAATTTCCTTCTGCATG-AGGCTT-CATGCTTCATG  48

seq1  CCATTATGGCAATTGACAAAACCTCTG-AAACTGTAAGCCAGTCCCATTG  98
      ||||||||||||||||||||| ||||| ||||||||||||||||||| ||
seq2  CCATTATGGCAATTGACAAAA-CTCTGAAAACTGTAAGCCAGTCCCAATG  97

seq1  AAATGTTTTCCTTCATAAAAGCTGCCTTTGGTCATGGTATCTCTTTACAG  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTCCATCATAAAAGCTGCCTTTGGTCATGGTATCTCTTTACAG  147

seq1  CAATAAAACACTAAGACAATGCCATACAGCAAATACCCTCAGAGAGCATT  198
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAT-AAACACTAAGACAATGCCATACAGCAAATA-CCTCAGAGAGCATT  195

seq1  ACTGTGTTTATTGATATTTTATTTTATTTTATTTTATTTTATTTTATTTT  248
      ||||||||||||||||||||||||   ||||||||| |||||||||||||
seq2  ACTGTGTTTATTGATATTTTATTT--ATTTATTTTA-TTTATTTTATTTT  242

seq1  ATTTTATTTTATTTTATTTTGGTGTTTCGAGACAGGGTTTCTCTGTACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTATTTTGGTGTTTCGAGACAGGGTTTCTCTGTACAG  292

seq1  TCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTGGAACTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTGGAACTCA  342

seq1  GAAATCTGCCAGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGTGAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGCCAGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGTGAGAC  392

seq1  ACCACCGCCCAACTTTTCTTTTTTTTTAATATTTTAAAATAAGTAAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCGCCCAACTTTTCTTTTTTTTTAATATTTTAAAATAAGTAAATTT  442

seq1  GCTTAC--ATATATATATATATATATATATATATATATATATATATTAAT  496
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATATATATATATATATATATATATATATATATATATATATTAAT  492

seq1  TACATACACTTCACAGAGAATTACTGTGAGAAACTGGTAAATATTGCCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACTTCACAGAGAATTACTGTGAGAAACTGGTAAATATTGCCTT  542

seq1  CTTTCCTCTTTTGGCTTCGGTAGAAAGTGATGAGGTTGTACATGCTCTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTTTTGGCTTCGGTAGAAAGTGATGAGGTTGTACATGCTCTGT  592

seq1  GTTACCAGACACTAATAAAGCTCCATGTGGCTCTCTGGAAAGTCAAGTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAGACACTAATAAAGCTCCATGTGGCTCTCTGGAAAGTCAAGTTT  642

seq1  TCTTCTTGCAAAATTTCCCTATCTTTTAAGGAAATGGCTTCTCCTCTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCAAAATTTCCCTATCTTTTAAGGAAATGGCTTCTCCTCTTAA  692

seq1  TCACCTCTTATAGAAAGTAATCTTTCTTTGCAAAAGGATTAATTCCACAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTTATAGAAAGTAATCTTTCTTTGCAAAAGGATTAATTCCACAT  742

seq1  AGATGTAAAAAAAACAATAAAGAATATATTGATACAAAGAGAACATGTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAAAAAAACAATAAAGAATATATTGATACAAAGAGAACATGTAG  792

seq1  AAAGGATCATAGATCCTTTATTCTGTTAGGATATTTTTCATGTATCTACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCATAGATCCTTTATTCTGTTAGGATATTTTTCATGTATCTACA  842

seq1  TTGATTTCTAATACTATCATTGCTGATTTTTAATTACCTAACCTTATATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTAATACTATCATTGCTGATTTTTAATTACCTAACCTTATATC  892

seq1  AGCTATTATGGTAAACACAGAACTAAAGAGACTAAGCACAAAAGCACGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTATGGTAAACACAGAACTAAAGAGACTAAGCACAAAAGCACGAG  942

seq1  CTTTGATAATAGTATTTAAGGCTGTTGAATTC  978
      ||||||||||||||||||||||||||||||||
seq2  CTTTGATAATAGTATTTAAGGCTGTTGAATTC  974