BAC Information

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BAC

Clone NameB6Ng01-160E19
Chromosome15 (Build37)
Map Location 101,716,059 - 101,911,046
singlet/doubletdoublet
Overlap geneKrt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77
Downstream geneEif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160E19.bB6Ng01-160E19.g
ACCDH953713DH953714
length7191,055
definitionDH953713|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E19, 5' end.DH953714|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,910,331 - 101,911,046)(101,716,059 - 101,717,196)
sequence
gaattctctgtaccttcagaacttcagacccagcacagtcaattcaaggg
accaagaggagttctagaacaaagtcaccaccaggccattaaggggggaa
cttcccctaaaaccaaaaccaaagcaaaaccatcctacctggctgggtag
gaatcggcctgttaactcagtaccattggatgatttcaagtttgaggtca
gctctggtaaccagtgactgttccctcctccaaaagttaagagctttgct
attatcctaatagcttcatagttgtcactatgcagtcctggctggataca
tactctgagatccgcctgtctctgctcctcaagtgctgggattaaaggga
tggttcacccagcagcttcttcttcttctttttttttttttggtttttcg
agacggtttctctgtatagcccctggctgtcctgaaactcaagcttcatg
ttttttttaacaatcacgagtcctttcaattctcacctttcaactcaaga
aagaatatatattttaaaagatttacttattattatacacaagtacacta
tagctgtcttcagatgcaccagaagagggcgtcagatctcattaccggtg
gttgtgagccaccatgtggctgctgggaatttgaactcaggacctttggg
aaaagcagcgaatgctctttacccactgagccatctcgccagccctcatg
agaatattctaattcgata
gaattcaaactcagaccctcatgcttacactgtgcccactgagcagtctc
cagcccccgggggaaggttcttgaatgtgctacttacaaatgctcacagc
attctgaaactctccagacaacctggaaagacagagagagagttatttct
ccagtgcgtcaacagacaaagaactgagggctcataaccttgggcaccac
ctcctcccatctgccctcctaggggtcaagccccagagaagggaaaggtt
agtccagggttgttcccatcaatatgttccccagagaagggggccgatga
ttgcaattactactctccgcacctctgaccaccacactctatgtctgcct
cttcccacccttcaccttgaagacctgttccaggcaaactgccaccctct
gctggattagcctccctcacctctggccagagatgatctctatcttgtat
gcccttcccctccccctcttcccagccctccctttatttactcaattttc
ctcttccaggaagccttccccagtgaggcttggggtgacatggggcttag
ggcagcagcagtagtagtgattgtggagaaaatatgagatgctaacccac
ggtgtgtgctgtatttgaaatttcccgactcacaatgaccatctccctgg
gccttatgctcgttcatggagcaggtgtagctgagcagacatggaatgtc
catgtgcccccagccacagtgctcgctgtgctgaccactcccttatcatc
acatgactctcaattgactcatctccactgttcccctacagagactcaac
aaagatccttctctcccacgataggtctctccttcctcgatcacactgtg
atctgactgggggcaaaggctctgaatgagggtgcatgagtcagggtcag
tagtatgacccttctctcttgacacggcctcacatgtgagtcccatcgta
ggctttacctgacactttacgctgtgtcatttttcagggtttgtagcatc
atgcccttcccattacccactccagctcttagcaatcgggtttgacaact
ggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101910331_101911046
seq2: B6Ng01-160E19.b_48_766 (reverse)

seq1  TATCGAATTAGAATATTCTCTTGAGGGCTGGCGAGATGGCTCAGTGGGT-  49
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TATCGAATTAGAATATTCTCATGAGGGCTGGCGAGATGGCTCAGTGGGTA  50

seq1  AAGAGCATCGACTGCTCTT-CCAAAGGTCCTGAGTTC-AAGTCCCAGCAG  97
      ||||||||   ||||| || ||||||||||||||||| || |||||||||
seq2  AAGAGCATTCGCTGCTTTTCCCAAAGGTCCTGAGTTCAAATTCCCAGCAG  100

seq1  CCACATGGTGGCTCACAACCACCGGTAATGAGATCTGACGCCCTCTTCTG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCACCGGTAATGAGATCTGACGCCCTCTTCTG  150

seq1  GTGCATCTGAAGACAGCTATAGTGTACTTGTGTATAATAATAAGTAAATC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTGAAGACAGCTATAGTGTACTTGTGTATAATAATAAGTAAATC  200

seq1  TTTTAAAATATATATTCTTTCTTGAGTTGAAAGGTGAGAATTGAAAGGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATATATATTCTTTCTTGAGTTGAAAGGTGAGAATTGAAAGGAC  250

seq1  TCGTGATTGTTAAAAAAAACATGAAGCTTGAGTTTCAGGACAGCCAGGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATTGTTAAAAAAAACATGAAGCTTGAGTTTCAGGACAGCCAGGGG  300

seq1  CTATACAGAGAAACCGTCTCGAAAAACCAAAAAAAAAAAAAGAAGAAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCGTCTCGAAAAACCAAAAAAAAAAAAAGAAGAAGAA  350

seq1  GAAGCTGCTGGGTGAACCATCCCTTTAATCCCAGCACTTGAGGAGCAGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGCTGGGTGAACCATCCCTTTAATCCCAGCACTTGAGGAGCAGAG  400

seq1  ACAGGCGGATCTCAGAGTATGTATCCAGCCAGGACTGCATAGTGACAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCGGATCTCAGAGTATGTATCCAGCCAGGACTGCATAGTGACAACT  450

seq1  ATGAAGCTATTAGGATAATAGCAAAGCTCTTAACTTTTGGAGGAGGGAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTATTAGGATAATAGCAAAGCTCTTAACTTTTGGAGGAGGGAAC  500

seq1  AGTCACTGGTTACCAGAGCTGACCTCAAACTTGAAATCATCCAATGGTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGGTTACCAGAGCTGACCTCAAACTTGAAATCATCCAATGGTAC  550

seq1  TGAGTTAACAGGCCGATTCCTACCCAGCCAGGTAGGATGGTTTTGCTTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAACAGGCCGATTCCTACCCAGCCAGGTAGGATGGTTTTGCTTTG  600

seq1  GTTTTGGTTTTAGGGGAAGTTCCCCCCTTAATGGCCTGGTGGTGACTTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTTAGGGGAAGTTCCCCCCTTAATGGCCTGGTGGTGACTTTG  650

seq1  TTCTAGAACTCCTCTTGGTCCCTTGAATTGACTGTGCTGGGTCTGAAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAACTCCTCTTGGTCCCTTGAATTGACTGTGCTGGGTCTGAAGTT  700

seq1  CTGAAGGTACAGAGAATTC  716
      |||||||||||||||||||
seq2  CTGAAGGTACAGAGAATTC  719

seq1: chr15_101716059_101717196
seq2: B6Ng01-160E19.g_67_1121

seq1  GAATTCAAACTCAGACCCTCATGCTTACACTGTGCCCACTGAGCAGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCAGACCCTCATGCTTACACTGTGCCCACTGAGCAGTCTC  50

seq1  CAGCCCCCGGGGGAAGGTTCTTGAATGTGCTACTTACAAATGCTCACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCGGGGGAAGGTTCTTGAATGTGCTACTTACAAATGCTCACAGC  100

seq1  ATTCTGAAACTCTCCAGACAACCTGGAAAGACAGAGAGAGAGTTATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAACTCTCCAGACAACCTGGAAAGACAGAGAGAGAGTTATTTCT  150

seq1  CCAGTGCGTCAACAGACAAAGAACTGAGGGCTCATAACCTTGGGCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCGTCAACAGACAAAGAACTGAGGGCTCATAACCTTGGGCACCAC  200

seq1  CTCCTCCCATCTGCCCTCCTAGGGGTCAAGCCCCAGAGAAGGGAAAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCATCTGCCCTCCTAGGGGTCAAGCCCCAGAGAAGGGAAAGGTT  250

seq1  AGTCCAGGGTTGTTCCCATCAATATGTTCCCCAGAGAAGGGGGCCGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGGTTGTTCCCATCAATATGTTCCCCAGAGAAGGGGGCCGATGA  300

seq1  TTGCAATTACTACTCTCCGCACCTCTGACCACCACACTCTATGTCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTACTACTCTCCGCACCTCTGACCACCACACTCTATGTCTGCCT  350

seq1  CTTCCCACCCTTCACCTTGAAGACCTGTTCCAGGCAAACTGCCACCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACCCTTCACCTTGAAGACCTGTTCCAGGCAAACTGCCACCCTCT  400

seq1  GCTGGATTAGCCTCCCTCACCTCTGGCCAGAGATGATCTCTATCTTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTAGCCTCCCTCACCTCTGGCCAGAGATGATCTCTATCTTGTAT  450

seq1  GCCCTTCCCCTCCCCCTCTTCCCAGCCCTCCCTTTATTTACTCAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCCCTCCCCCTCTTCCCAGCCCTCCCTTTATTTACTCAATTTTC  500

seq1  CTCTTCCAGGAAGCCTTCCCCAGTGAGGCTTGGGGTGACATGGGGCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGGAAGCCTTCCCCAGTGAGGCTTGGGGTGACATGGGGCTTAG  550

seq1  GGCAGCAGCAGTAGTAGTGATTGTGGAGAAAATATGAGATGCTAACCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCAGTAGTAGTGATTGTGGAGAAAATATGAGATGCTAACCCAC  600

seq1  GGTGTGTGCTGTATTTGAAATTTCCCGACTCACAATGACCATCTCCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCTGTATTTGAAATTTCCCGACTCACAATGACCATCTCCCTGG  650

seq1  GCCTTATGCTCGTTCATGGAGCAGGTGTAGCTGAGCAGACATGGAATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATGCTCGTTCATGGAGCAGGTGTAGCTGAGCAGACATGGAATGTC  700

seq1  CATGTGCCCCCAGCCACAGTGCTCGCTGTGCTGACCACTCCCTTATCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCCCCAGCCACAGTGCTCGCTGTGCTGACCACTCCCTTATCATC  750

seq1  ACATGACTCTCAATTGACTCATCTCCACTGTTCCCCTACAGAGACTCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTCTCAATTGACTCATCTCCACTGTTCCCCTACAGAGACTCAAC  800

seq1  AAAGATCCTTCTCCTCCCACGATAGGTCTCTCCTTCCTCGATCACACTGT  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCTTCT-CTCCCACGATAGGTCTCTCCTTCCTCGATCACACTGT  849

seq1  GATCTGACTGGGGGCAAAGGCTCTGAATGAGGGTGCATGAGTCAGGGGTC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATCTGACTGGGGGCAAAGGCTCTGAATGAGGGTGCATGAGTCA-GGGTC  898

seq1  AGTAGTATGACCCTTCTCTCTTGACACCGCCCTCACATGTGGAGTCCCAT  950
      |||||||||||||||||||||||||| || |||||||||| |||||||||
seq2  AGTAGTATGACCCTTCTCTCTTGACA-CGGCCTCACATGT-GAGTCCCAT  946

seq1  CGTTAAGCCTTTACCTGACACTTTACGCTGTGTCATTTTTCAGGGGTATG  1000
      |||  || |||||||||||||||||||||||||||||||||| |||| ||
seq2  CGT--AGGCTTTACCTGACACTTTACGCTGTGTCATTTTTCA-GGGTTTG  993

seq1  TAAGCATCATGCCCTTCCCCATACACACT-CAGCTC-TAGCAATCGGGTT  1048
      | |||||||||||||||||  ||| |||| |||||| |||||||||||||
seq2  T-AGCATCATGCCCTTCCCATTACCCACTCCAGCTCTTAGCAATCGGGTT  1042

seq1  TGACAAACTGTTCATACCAAATTTCCAATATGGTGGCCACTAGCCACATG  1098
      ||||||   || |                                     
seq2  TGACAACTGGTCC-------------------------------------  1055

seq1  AAGCTATGCAAAGTAGATTCAATGTGTAAAACTCTGGTCC  1138
                                              
seq2  ----------------------------------------  1055