BAC Information

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BAC

Clone NameB6Ng01-162D06
Chromosome15 (Build37)
Map Location 35,760,200 - 35,919,436
singlet/doubletdoublet
Overlap geneVps13b, Cox6c
Upstream geneKcns2, Stk3, Osr2, EG666183
Downstream geneRgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D06.bB6Ng01-162D06.g
ACCDH955099DH955100
length6791,066
definitionDH955099|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D06, 5' end.DH955100|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,918,893 - 35,919,436)(35,760,200 - 35,761,266)
sequence
gaattccaggacagccagggctacacagagaaaccctgtcttgaaaaacc
aaaaaaaaaaaaaaaaaaagagtagtgatattgataatgatggctgtggt
agtttgaatgtaattggccccgtacacccagagagagtggcactattagg
aagtgtgatattgctgaaggaagcatgtcactatggaggtggacattgaa
ttctcctatgctcaagctatgccctgtgtggaacagtctttttctgccgc
ctttagatggagatggagattcagattctcagctccttctccagcacctt
atctgcctggatgttactatgcttaacacagagacagggtgtgtgacctt
tgtggtatatatatgtatgtatgtacacatgtgtgtgtgtatgatatatt
taaattttggtttaagatttttcaatatgagatcttggttaaaatgggta
agcattgtactttgacagtttagaagtgactggaatggcactataggaat
tttaaacacacacacacacacacacacatatatatataatttaatatata
tatatggagagagaggagagagagagagagagagacttcctatttatttt
taccttcgggatcagacgaaataaatgtaaggatcaggagtagaactgaa
taattctttacaattaagacaattttttt
gaattctctgagtaagttgagatattccagttgagatgtgttaactgtag
agttggcccctgacaagttgtaagctcaaagtttttctttaatgctcatt
ttctttttttttaatttattttttattaggtattttcttcatttatattt
caaatgctatcccaaaagtcccccatactctcccccccccaactccccta
cccacccactcctacttcttggtcctggcgttcccctgtactggggcata
taaagtttgcaataccaaggggcctctcttcccaatgatggccgactagg
ccttcttctgatacatatgcagctagagacacgagctctgagggtactgg
ttagttcatattgttgttccacctatagggttgcagaccccttcagctcc
ttggttactttctctagctcctccattggggccctgtgtcccatcctata
gctgactgtgagcatccacttctgtgtttgccaggcactggcatcgcctc
acaagagacagctatatcaaggtcctttcagcaaaaggttcctacgtacc
ccatttccacatttcttctgcccctagttgtgagtttcttaatctaaaga
acaggctcgatgctttctgaaaagactcaaagcaagatagcatttgattt
gggctttgatagacaggaagggtttagacacaaaaggacaagaaaatggg
tatttcggattggagagaatacagaaataatgatgcaaagagaagaagct
gtaaacaagcttgccatgagtagcaagaaatgagaattgctgtccttttt
tttttcttcttgatttcttattgttttgttctttagcacaagttagcccc
aaatgcctatgtactgctatcttgaagttaaccttgaactttgattatcc
ttcctccaccttacaagtgttggggtacatggtgcactccaccatgccta
actaacactggtttccatgaattatgctacttttaagtccccaacattat
gcatctgcttcagtatactcatggatctggattcttcttcacccagtcat
ctcaaccttcacacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_35918893_35919436
seq2: B6Ng01-162D06.b_182_725 (reverse)

seq1  AAAAAAATTGTCTTAATTGTAAAGAATTATTCAGTTCTACTCCTGATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGTCTTAATTGTAAAGAATTATTCAGTTCTACTCCTGATCCT  50

seq1  TACATTTATTTCATCTGATCCTGAAGGTATAAATAAATAGGAAGTCTCTC  100
      |||||||||||| |||||||| ||||||| ||||||||||||||||||||
seq2  TACATTTATTTCGTCTGATCCCGAAGGTAAAAATAAATAGGAAGTCTCTC  100

seq1  TCTCTCTCTCTCTCCTCTCTCTCCATATATATATATTAAATTATATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCCTCTCTCTCCATATATATATATTAAATTATATATAT  150

seq1  ATGTGTGTGTGTGTGTGTGTGTGTTTAAAATTCCTATAGTGCCATTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTGTGTGTGTTTAAAATTCCTATAGTGCCATTCCAG  200

seq1  TCACTTCTAAACTGTCAAAGTACAATGCTTACCCATTTTAACCAAGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTAAACTGTCAAAGTACAATGCTTACCCATTTTAACCAAGATCT  250

seq1  CATATTGAAAAATCTTAAACCAAAATTTAAATATATCATACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGAAAAATCTTAAACCAAAATTTAAATATATCATACACACACACA  300

seq1  TGTGTACATACATACATATATATACCACAAAGGTCACACACCCTGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACATACATACATATATATACCACAAAGGTCACACACCCTGTCTCT  350

seq1  GTGTTAAGCATAGTAACATCCAGGCAGATAAGGTGCTGGAGAAGGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAGCATAGTAACATCCAGGCAGATAAGGTGCTGGAGAAGGAGCTG  400

seq1  AGAATCTGAATCTCCATCTCCATCTAAAGGCGGCAGAAAAAGACTGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGAATCTCCATCTCCATCTAAAGGCGGCAGAAAAAGACTGTTCC  450

seq1  ACACAGGGCATAGCTTGAGCATAGGAGAATTCAATGTCCACCTCCATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCATAGCTTGAGCATAGGAGAATTCAATGTCCACCTCCATAGT  500

seq1  GACATGCTTCCTTCAGCAATATCACACTTCCTAATAGTGCCACT  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCTTCCTTCAGCAATATCACACTTCCTAATAGTGCCACT  544

seq1: chr15_35760200_35761266
seq2: B6Ng01-162D06.g_69_1134

seq1  GAATTCTCTGAGTAAGTTGAGATATTCCAGTTGAGATGTGTTAACTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTAAGTTGAGATATTCCAGTTGAGATGTGTTAACTGTAG  50

seq1  AGTTGGCCCCTGACAAGTTGTAAGCTCAAAGTTTTTCTTTAATGCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCCCTGACAAGTTGTAAGCTCAAAGTTTTTCTTTAATGCTCATT  100

seq1  TTCTTTTTTTTTAATTTATTTTTTATTAGGTATTTTCTTCATTTATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTAATTTATTTTTTATTAGGTATTTTCTTCATTTATATTT  150

seq1  CAAATGCTATCCCAAAAGTCCCCCATACTCTCCCCCCCCCAACTCCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTATCCCAAAAGTCCCCCATACTCTCCCCCCCCCAACTCCCCTA  200

seq1  CCCACCCACTCCTACTTCTTGGTCCTGGCGTTCCCCTGTACTGGGGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACTCCTACTTCTTGGTCCTGGCGTTCCCCTGTACTGGGGCATA  250

seq1  TAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGG  300

seq1  CCTTCTTCTGATACATATGCAGCTAGAGACACGAGCTCTGAGGGTACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTGATACATATGCAGCTAGAGACACGAGCTCTGAGGGTACTGG  350

seq1  TTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCC  400

seq1  TTGGTTACTTTCTCTAGCTCCTCCATTGGGGCCCTGTGTCCCATCCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTACTTTCTCTAGCTCCTCCATTGGGGCCCTGTGTCCCATCCTATA  450

seq1  GCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCACTGGCATCGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCACTGGCATCGCCTC  500

seq1  ACAAGAGACAGCTATATCAAGGTCCTTTCAGCAAAAGGTTCCTACGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGACAGCTATATCAAGGTCCTTTCAGCAAAAGGTTCCTACGTACC  550

seq1  CCATTTCCACATTTCTTCTGCCCCTAGTTGTGAGTTTCTTAATCTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCACATTTCTTCTGCCCCTAGTTGTGAGTTTCTTAATCTAAAGA  600

seq1  ACAGGCTCGATGCTTTCTGAAAAGACTCAAAGCAAGATAGCATTTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCGATGCTTTCTGAAAAGACTCAAAGCAAGATAGCATTTGATTT  650

seq1  GGGCTTTGATAGACAGGAAGGGTTTAGACACAAAAGGACAAGAAAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGATAGACAGGAAGGGTTTAGACACAAAAGGACAAGAAAATGGG  700

seq1  TATTTCGGATTGGAGAGAATACAGAAATAATGATGCAAAGAGAAGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCGGATTGGAGAGAATACAGAAATAATGATGCAAAGAGAAGAAGCT  750

seq1  GTAAACAAGCTTGCCATGAGTAGCAAGAAATGAGAATTGCTGTCCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGCTTGCCATGAGTAGCAAGAAATGAGAATTGCTGTCCTTTTT  800

seq1  TTTTTCTTCTTGATTTCTTATTGTTTTGTTCTTTTAGCACAAGTTAGCCC  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTTCTTCTTGATTTCTTATTGTTTTGTTC-TTTAGCACAAGTTAGCCC  849

seq1  CAAATGCCCTATGTACCTGCTATC-TGAAGTTAACCTTGAACTTTGATTA  899
      |||||| |||||||| |||||||| |||||||||||||||||||||||||
seq2  CAAATG-CCTATGTA-CTGCTATCTTGAAGTTAACCTTGAACTTTGATTA  897

seq1  TCCTTCCTCCACCTTACAAGTGTTGGGGTTACAT-GTGCACACCACCATG  948
      |||||||||||||||||||||||||||| ||||| |||||| ||||||||
seq2  TCCTTCCTCCACCTTACAAGTGTTGGGG-TACATGGTGCACTCCACCATG  946

seq1  CCTAACTAACACTGGTTTCCATGAA-TATGCTACTTTTAAGTTCCCCAAA  997
      ||||||||||||||||||||||||| ||||||||||||||| ||||||| 
seq2  CCTAACTAACACTGGTTTCCATGAATTATGCTACTTTTAAG-TCCCCAAC  995

seq1  CATATGCATCTGCTTCAGTATACTCATGAATCTTGAGTCCTCCTCACCCA  1047
        |||||||||||||||||||||||||| |||| || || || |||||||
seq2  ATTATGCATCTGCTTCAGTATACTCATGGATCTGGATTCTTCTTCACCCA  1045

seq1  G-CATCACCACCCTCACACAT  1067
      | |||| | ||| ||||||||
seq2  GTCATCTCAACCTTCACACAT  1066