BAC Information

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BAC

Clone NameB6Ng01-162I21
Chromosome15 (Build37)
Map Location 84,957,713 - 84,958,907
singlet/doubletsinglet
Overlap geneSmc1b
Upstream genePnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik
Downstream geneRibc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162I21.bB6Ng01-162I21.g
ACCDH955366DH955367
length1,1661,211
definitionDH955366|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I21, 5' end.DH955367|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcattttaataaaaattcttttgttcactgtattaagaagtgt
aataccagctgggcattgtgatgcaatactcggaggcagtggtagggaga
tctctgtgatgtcaaggccagcctgagctgcaaatcaagttccagaaaag
ccaaatcctgtcttgaaaaactaagaaaaaaaaagcagtaccttcctcca
catgcagaaacaacccaaccatctttcttttccatctttttcactccttt
cttttttttagtttttcaagacagggtttctctgtgtagccctggctgtc
ctggaactcactctgtagacctaggcctcagaaatccacctgcctctgct
tcccaagtgctgggattaaaggcgtgtgccaccactgccctacctgtttt
cactcctttctgatactactttctcacatgctattttatttgaatatttt
gtttatatctctaagatatgaactctctgagatcctttagtatgtaatat
ttgttgagtaaatgagcttatttataaatatattagttacattattgtaa
aactagtcatttcaataagaaaaacattctgtaacagctgattttgttta
ctttaggggggtgctcagaatatcattttggggataaacccgtgagtcgt
tctgtgtatgtagcccagttggaaaacataggcataatagtcaaagcaca
gaactgtctagtttttcaggtaagcagttgtactcattttatttgattca
ttttaaaaacatgttaccacatcttacatgctgttgtgctttactgttac
taatagggaactgtagagtcaatatccatgaaaaagcccaaagagagaac
ccagttttttgaagaaatcagtacttcagagatttataggagaatatgag
gcaaagaaaagaaattacaaaagctgaagaagatgcacaatttcatttta
atgtgaaaaaaatgtagctgcagaacggaagcatgcaaaatagagaaaga
gaggttagtgccttgaaatgtaccagtagtaattatatttaaatagaaaa
aaatatgtaaattagtatatccgactggtggtgcacaccttattctagac
ctcccaagacgaagcagcagatcctctagtgaggctagtctggtgtacaa
gctagttccagacaac
gaattctcagctcctcctgcaccatgcctgcctggatgctgccatgctcc
caccttgatgataatggactgaacctccgaacctgtaagccagccccaac
tagatgttgtcctttataagtcttgccttggtcatggtgtctgttcacag
cagtaaaaccctaactaacacagaatttggtactagggactggggtattg
ctgtgataggcctgaccatgcttttgtttggaagaatatggattttggga
ctttggatttagaaagcaatgcaatgctttaaatgaggcttaatgggtca
tcctaccaggaatgtggagaaaaaactttgttgctatgagtgattttaac
tatgcagacctggcccaagaagtttcagaggagaagaatttcggtatatg
gcatagtgtctgtttttgtggtattttggtaaagagggtgactgcttttt
gcccttgtatgaagcatctagcttaggctaaagtaaagagatttatatta
attgctttgacaaaggaagtctcaaaaaagcccagcagagtctctgttct
ctggttaagtctcatgaagagcatgttgaacaagtatagcaaacttagaa
aggaaaaatataaaatatatggctcaagtattaaagggcaccaggaagtc
aaatggagcagaatcctgtgttcaaggagattaaattgaattaagcgagt
gggactttggggcaagatcctacccagctaagttttgatctaggcatggt
ggtgcacacctttactccaaggagacaggcttgcagatctctgagttcaa
ggtcaatctacagagcaagatccaggatagccaagcttagttagtgaaag
agttggaaatgaggaagctactgataatgtaatagaacaagaggggccat
gttccagctcctgcaagcagcaaaactcagcagcttgggccatgtgtctc
tggctttagagtgaaaaatagaaggactactgggacagttgatgctggtt
acctggagcttatgaaatagcagtgattagagagaccagcatcattgagt
gaattcttctgggagtgtttcttgagagcaccaagagcctatgtttcaag
atagccaagttgtaccctcggcctgcgacctgggacttggtatgttaaaa
ggtaccaggtgtactgttggaaccttgaggcttgagaaccagcctgagcc
tggctcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84957713_84958907
seq2: B6Ng01-162I21.b_44_1209 (reverse)

seq1  GTTGTCCTGGAACTAGCTCTGTACACCAGACTAGCCTCAAACTAAGAGAT  50
      ||||| |||||||||||| |||||||||||||||||||  ||||   |||
seq2  GTTGT-CTGGAACTAGCT-TGTACACCAGACTAGCCTC--ACTAGAGGAT  46

seq1  CTGCCTGCTTCTGTCTTGTGAGTGCTAGAATTAAAGGTGTGCACCACCAT  100
      ||| ||||||| |||||| |||  |||||||  |||||||||||||||| 
seq2  CTG-CTGCTTC-GTCTTGGGAGGTCTAGAAT--AAGGTGTGCACCACCA-  91

seq1  GTCTGGATAATAACTTAAAATTTTAACATATTTTTTTCTATTTAATATAT  150
      ||| |||||   |||   |||||  |||||||||||||||||||| ||||
seq2  GTC-GGATA--TACT---AATTT--ACATATTTTTTTCTATTTAA-ATAT  132

seq1  ATTTACTAACTGGTAACATTTTCAGGGCACCTTACCTCTTCTTTCTCTAT  200
      | ||||| |||||| ||| ||||| |||| || ||||| |||||||||| 
seq2  AATTACT-ACTGGT-ACA-TTTCAAGGCA-CTAACCTC-TCTTTCTCTA-  176

seq1  TTTTGCATGCTTCCGTTCTGCAGCTACATTTTTTTTCACATTAAAATGAA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTGCATGCTTCCGTTCTGCAGCTACA-TTTTTTTCACATTAAAATGAA  225

seq1  ATTGTGCATCTTCTTCAGCTTTTTGTAATTTCTTTTTCTTTGCCTCATAT  300
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  ATTGTGCATCTTCTTCAGC-TTTTGTAATTTC-TTTTCTTTGCCTCATAT  273

seq1  TCTCCTATAAATTCTCCTGAAGTACTGATTTCTTCAAAAAACTGGGTTCT  350
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  TCTCCTATAAA-TCT-CTGAAGTACTGATTTCTTCAAAAAACTGGGTTCT  321

seq1  CTCTTTGGGCTTTTTCATGGATATTGACTCTACAGTTCCCTATTAGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGGCTTTTTCATGGATATTGACTCTACAGTTCCCTATTAGTAAC  371

seq1  AGTAAAGCACAACAGCATGTAAGATGTGGTAACATGTTTTTAAAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCACAACAGCATGTAAGATGTGGTAACATGTTTTTAAAATGAAT  421

seq1  CAAATAAAATGAGTACAACTGCTTACCTGAAAAACTAGACAGTTCTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAATGAGTACAACTGCTTACCTGAAAAACTAGACAGTTCTGTGC  471

seq1  TTTGACTATTATGCCTATGTTTTCCAACTGGGCTACATACACAGAACGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTATTATGCCTATGTTTTCCAACTGGGCTACATACACAGAACGAC  521

seq1  TCACGGGTTTATCCCCAAAATGATATTCTGAGCACCCCCCTAAAGTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGTTTATCCCCAAAATGATATTCTGAGCACCCCCCTAAAGTAAAC  571

seq1  AAAATCAGCTGTTACAGAATGTTTTTCTTATTGAAATGACTAGTTTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGCTGTTACAGAATGTTTTTCTTATTGAAATGACTAGTTTTACA  621

seq1  ATAATGTAACTAATATATTTATAAATAAGCTCATTTACTCAACAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTAACTAATATATTTATAAATAAGCTCATTTACTCAACAAATATT  671

seq1  ACATACTAAAGGATCTCAGAGAGTTCATATCTTAGAGATATAAACAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTAAAGGATCTCAGAGAGTTCATATCTTAGAGATATAAACAAAAT  721

seq1  ATTCAAATAAAATAGCATGTGAGAAAGTAGTATCAGAAAGGAGTGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATAAAATAGCATGTGAGAAAGTAGTATCAGAAAGGAGTGAAAAC  771

seq1  AGGTAGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAAGCAG  821

seq1  AGGCAGGTGGATTTCTGAGGCCTAGGTCTACAGAGTGAGTTCCAGGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATTTCTGAGGCCTAGGTCTACAGAGTGAGTTCCAGGACAG  871

seq1  CCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACTAAAAAAAAGAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACTAAAAAAAAGAAAGG  921

seq1  AGTGAAAAAGATGGAAAAGAAAGATGGTTGGGTTGTTTCTGCATGTGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAGATGGAAAAGAAAGATGGTTGGGTTGTTTCTGCATGTGGAG  971

seq1  GAAGGTACTGCTTTTTTTTTCTTAGTTTTTCAAGACAGGATTTGGCTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTACTGCTTTTTTTTTCTTAGTTTTTCAAGACAGGATTTGGCTTTT  1021

seq1  CTGGAACTTGATTTGCAGCTCAGGCTGGCCTTGACATCACAGAGATCTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTTGATTTGCAGCTCAGGCTGGCCTTGACATCACAGAGATCTCC  1071

seq1  CTACCACTGCCTCCGAGTATTGCATCACAATGCCCAGCTGGTATTACACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGCCTCCGAGTATTGCATCACAATGCCCAGCTGGTATTACACT  1121

seq1  TCTTAATACAGTGAACAAAAGAATTTTTATTAAAATGAAGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATACAGTGAACAAAAGAATTTTTATTAAAATGAAGAATTC  1166