BAC Information

Click to search

BAC

Clone NameB6Ng01-163H12
Chromosome15 (Build37)
Map Location 48,373,933 - 48,513,346
singlet/doubletdoublet
Overlap geneCsmd3
Upstream genenone
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163H12.bB6Ng01-163H12.g
ACCDH956046DH956047
length1,2191,196
definitionDH956046|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H12, 5' end.DH956047|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,373,933 - 48,375,149)(48,512,158 - 48,513,346)
sequence
gaattccaaaaatacttcaaacagatttattgtctgtggatgtgtgcaat
taaaaagtactcagactagagagactgatggctcattgctaagaatgctt
gctacatagcaagagaaaaggagtttgggtgcccttcacccatgtgacta
ccaaggtgcagccatagacctctgtagccccaacaatgtttttatggtaa
tgcaggacgtgagagaatccatggctcttactgactgccagtccaaacta
aatattacgtggtccagagagagagagagagagagagagagagagagaga
gagagagagagagagagagagaaagggagagaaagaaagggagaaaggga
gaggaagagaggataacatgcatgtgtatacatatacacacatgaacaac
ccaacatatgcagcatgttttacatgtaacaagagtatttttttaaatct
ttcattttctggaaattttatataaataatacttgttggaatagatgcta
gggttaataagttttgataaatggaatgaaaactcaatcctttgagtaga
gtaataacaaaggaatacttttaatgaatctaccacatttgaccttataa
tcaaaacacttcctcttccttacacactctaaaaataattaaggtcaaga
cttcaattatcgtaaagctatatatctgggaggaaaggagatttcatatg
ctttcacaggaaatggtttgggagggaaataaaatgaaagataggaaagt
ttattttataccttttatgcttagttgcaacttatatttaaaccgaataa
gtattgcattgacgaataatataaaggggtaacgggcatatcccacaaat
gaggtgaatgaaattagacaacaatggaaccatcacagattacataaact
ctggccttgtgacttgaataacattgagaccaaagactcttaaaatgaat
gttttaccaaagaaaaggaaagaatataattctgttgcatgtccttgtct
tcattcctctagaatatgagactatctaccataatccctctgtggactaa
attagtcaccaaggcattggtgaaatattcacaattccaggttcctaaca
ttgttgcctgtagaatgtgctccatgaataacaaccttttttcccttaag
ctttaagaattcccctctaagcctctaggacaaccaagaatgaccaaaga
aggcttaaggtccattaac
gaattcaatattgattgcattttttcaatgcaatatattatttgagtgca
gaacatcaaaactaaacaaattatagttgttcagtatttcttttacaatt
aatcagaacaacttaaaaatgtatttttatcataactttattcaattttt
tttaccttaacctttatgtggtatactgattaactttttttaaccctgct
attggtattttagaaataatttaaatttcgtaattaccagtcaggctatt
tatttgcaggaataatttatatttctaaaaattcatgtgatttaaagctt
ggaagcaatgagaaagtagttcttactatgaggcattgtagtgtagtgtt
cactgggtctggcaacagtttccaaagcagtctacaatctgattgaaaag
cttttcaacattgcttatttaagaccggcagcttttgtaaaaatcttgca
gtgaatccattagatcttttaaataccactggaaatgttttggcttttct
acagccttatatttctttttacagaagacagtgaatattctaggttaccc
caagctaagcagtcacatatacaaacagatgtttaatataaagagccaat
gaattcaaaaagggttatgtatttttttcccactacaaaggaaaggtatg
ggttttgggggacacataaaatagtgtgtagaataagtatgagaaataaa
gtataatctagaatattccaataggctactaaaactaatacacataaaag
caagagtgccacttgaacaatattggcaattacattaaaactaatctgat
atgaacaaaatcacggtaaaatgtggaatcagtttaactttttcagaaaa
cagctcaaaatttaatattttttttatttttttcaggagcaattattatg
tctttagagattctattatagcttatgatatataactaaggatttgattc
tgtataaatataattaagctttatagctttagtgggaaaaaattaattcg
cagacgtttatcatgttgaaggagggagaggaggaaaggagaattcagag
atttggtaatctttgggcttaagcaagttcaaagcaatgcttaggataac
ttaaaaccccactcagaaatgaaataaaagtaattcagttcctattaaca
gaagttaatgacagtgaatggatatgcctggaactgtgtgattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48373933_48375149
seq2: B6Ng01-163H12.b_43_1261

seq1  GAATTCCAAAAATACTTCAAACAGATTTATTGTCTGTGGATGTGTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAATACTTCAAACAGATTTATTGTCTGTGGATGTGTGCAAT  50

seq1  TAAAAAGTACTCAGACTAGAGAGACAGATGGCTCATTGCTAAGAATGCTT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAAAAGTACTCAGACTAGAGAGACTGATGGCTCATTGCTAAGAATGCTT  100

seq1  GCTACATAGCAAGAGAAAAGGAGTTTGGGTGCCCTTCACCCATGTGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAGCAAGAGAAAAGGAGTTTGGGTGCCCTTCACCCATGTGACTA  150

seq1  CCAAGGTGCAGCCATAGACCTCTGTAGCCCCAACAATGTTTTTATGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGCAGCCATAGACCTCTGTAGCCCCAACAATGTTTTTATGGTAA  200

seq1  TGCAGGACGTGAGAGAATCCATGGCTCTTACTGACTGCCAGTCCAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACGTGAGAGAATCCATGGCTCTTACTGACTGCCAGTCCAAACTA  250

seq1  AATATTACGTGGTCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACGTGGTCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  300

seq1  GAGAGAGAGAGAGAGAGAGAGAAAGGGAGAGAAAGAAAGGGAGAAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAAAGGGAGAGAAAGAAAGGGAGAAAGGGA  350

seq1  GAGGAAGAGAGGATAACATGCATGTGTATACATATACACACATGAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGAGGATAACATGCATGTGTATACATATACACACATGAACAAC  400

seq1  CCAACATATGCAGCATGTTTTACATGTAACAAGAGTATTTTTTTAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATATGCAGCATGTTTTACATGTAACAAGAGTATTTTTTTAAATCT  450

seq1  TTCATTTTCTGGAAATTTTATATAAATAATACTTGTTGGAATAGATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTGGAAATTTTATATAAATAATACTTGTTGGAATAGATGCTA  500

seq1  GGGTTAATAAGTTTTGATAAATGGAATGAAAACTCAATCCTTTGAGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAATAAGTTTTGATAAATGGAATGAAAACTCAATCCTTTGAGTAGA  550

seq1  GTAATAACAAAGGAATACTTTTAATGAATCTACCACATTTGACCTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACAAAGGAATACTTTTAATGAATCTACCACATTTGACCTTATAA  600

seq1  TCAAAACACTTCCTCTTCCTTACACACTCTAAAAATAATTAAGGTCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACACTTCCTCTTCCTTACACACTCTAAAAATAATTAAGGTCAAGA  650

seq1  CTTCAATTATCGTAAAGCTATATATCTGGGAGGAAAGGAGATTTCATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTATCGTAAAGCTATATATCTGGGAGGAAAGGAGATTTCATATG  700

seq1  CTTTCACAGGAAATGGTTTGGGAGGGAAATAAAATGAAAGATAGGAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAGGAAATGGTTTGGGAGGGAAATAAAATGAAAGATAGGAAAGT  750

seq1  TTATTTTATACCTTTTATGCTTAGTTGCAACTTATATTTAAACCGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATACCTTTTATGCTTAGTTGCAACTTATATTTAAACCGAATAA  800

seq1  GTATTGCATTGACGAATAATATAAAGGGGTAACGGGCATATCCCACAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCATTGACGAATAATATAAAGGGGTAACGGGCATATCCCACAAAT  850

seq1  GAGGTGAATG-AATTAGACAACAATGGAACCATCACAGATTACATAAACT  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAATGAAATTAGACAACAATGGAACCATCACAGATTACATAAACT  900

seq1  CTGGCCTTGTGAC-TGAATAACATTGAGACCAAAAGACTCTTAAAATGAA  948
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CTGGCCTTGTGACTTGAATAACATTGAGACC-AAAGACTCTTAAAATGAA  949

seq1  TGTTTTACCAAAGAAAAGGAAAGAATATAATTCTGTTGCATGT-CTTGTC  997
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTTTACCAAAGAAAAGGAAAGAATATAATTCTGTTGCATGTCCTTGTC  999

seq1  TTCATT-CTCTAGAATATGAGACTATCTACCAATAAT-CCTCTGTGGACT  1045
      |||||| |||||||||||||||||||||||| ||||| ||||||||||||
seq2  TTCATTCCTCTAGAATATGAGACTATCTACC-ATAATCCCTCTGTGGACT  1048

seq1  AAATTAGTCA-CAAAGCATT-GTGAAATATTTCAC-ATTCAAGTTTCAT-  1091
      |||||||||| ||| ||||| |||||||| ||||| |||| || ||| | 
seq2  AAATTAGTCACCAAGGCATTGGTGAAATA-TTCACAATTCCAGGTTCCTA  1097

seq1  ACATTGTTGCCCTGTAGATGTTGCT-CATGATTACATACTTTTTTTCCTT  1140
      ||||||||| ||||||||   |||| ||||| ||   || |||||||| |
seq2  ACATTGTTG-CCTGTAGAATGTGCTCCATGAATAACAACCTTTTTTCCCT  1146

seq1  TTAAAATCTTTAATAATTTCCCTCTAAGCTCTCTAGGACTAACATAGAAT  1190
      |   || |||||| |||| |||||||||| ||||||||| |||  |||||
seq2  T---AAGCTTTAAGAATTCCCCTCTAAGC-CTCTAGGAC-AACCAAGAAT  1191

seq1  GAACAAAAAGAAGGC-TAAG--TCATTAAC  1217
      || |  ||||||||| ||||   |||||||
seq2  GACC--AAAGAAGGCTTAAGGTCCATTAAC  1219

seq1: chr15_48512158_48513346
seq2: B6Ng01-163H12.g_67_1262 (reverse)

seq1  GAGAATACAACAGTTCAAGGCATACTCATTCACTGTCATTTAACTTCTG-  49
      ||||||   ||||||| |||||||  |||||||||||| |||||||||| 
seq2  GAGAATCACACAGTTCCAGGCATATCCATTCACTGTCA-TTAACTTCTGT  49

seq1  TAATATGTACTGAATTACTTTTTAATTTCATTTCTGAGT-GGGTTTTATG  98
      ||||| | ||||||||||||||  ||||||||||||||| |||||||| |
seq2  TAATAGGAACTGAATTACTTTT--ATTTCATTTCTGAGTGGGGTTTTAAG  97

seq1  -TATCCTAGGCA-TGCTTTGAACTTGCTTTTAGCCAAAGA-TACCAAATC  145
       ||||||| ||| ||||||||||||||||    ||||||| |||||||||
seq2  TTATCCTAAGCATTGCTTTGAACTTGCTTAAGCCCAAAGATTACCAAATC  147

seq1  TCCTGATTCTCC-TTCCTCCTCTCCCT-CTTCAACATGAT-AACGTCTGC  192
      ||   ||||||| |||||||||||||| |||||||||||| |||||||||
seq2  TCTGAATTCTCCTTTCCTCCTCTCCCTCCTTCAACATGATAAACGTCTGC  197

seq1  GAATTAATTTTAT-CCACT-AAGCTTTAAAGCTTAATATAATATTATACA  240
      ||||||||||| | ||||| ||||| ||||||||||| ||   |||||||
seq2  GAATTAATTTTTTCCCACTAAAGCTATAAAGCTTAAT-TATATTTATACA  246

seq1  GAATCAAATCCTAAGTTATATATCATAAGCTATAATAGAAATCTCTAAAG  290
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  GAATCAAATCCTTAGTTATATATCATAAGCTATAATAG-AATCTCTAAAG  295

seq1  ACATTATAATTGCTCTTGAAAAAA--TAAAAAAATATTAAATTTTGAGCT  338
      |||| |||||||||| ||||||||   |||||||||||||||||||||||
seq2  ACATAATAATTGCTCCTGAAAAAAATAAAAAAAATATTAAATTTTGAGCT  345

seq1  GTTTTCTGAAAAAGTTAAACTGATTCCACATTTTACCGTGATTTTGTTCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGAAAAAGTTAAACTGATTCCACATTTTACCGTGATTTTGTTCA  395

seq1  TATCAGATTAGTTTTAATGTAATTGCCAATATTGTTCAAGTGGCACTCTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTAGTTTTAATGTAATTGCCAATATTGTTCAAGTGGCACTCTT  445

seq1  GCTTTTATGTGTATTAGTTTTAGTAGCCTATTGGAATATTCTAGATTATA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATGTGTATTAGTTTTAGTAGCCTATTGGAATATTCTAGATTATA  495

seq1  CTTTATTTCTCATACTTATTCTACACACTATTTTATGTGTCCCCCAAAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTCATACTTATTCTACACACTATTTTATGTGTCCCCCAAAAC  545

seq1  CCATACCTTTCCTTTGTAGTGGGAAAAAAATACATAACCCTTTTTGAATT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTTTCCTTTGTAGTGGGAAAAAAATACATAACCCTTTTTGAATT  595

seq1  CATTGGCTCTTTATATTAAACATCTGTTTGTATATGTGACTGCTTAGCTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTCTTTATATTAAACATCTGTTTGTATATGTGACTGCTTAGCTT  645

seq1  GGGGTAACCTAGAATATTCACTGTCTTCTGTAAAAAGAAATATAAGGCTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAACCTAGAATATTCACTGTCTTCTGTAAAAAGAAATATAAGGCTG  695

seq1  TAGAAAAGCCAAAACATTTCCAGTGGTATTTAAAAGATCTAATGGATTCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGCCAAAACATTTCCAGTGGTATTTAAAAGATCTAATGGATTCA  745

seq1  CTGCAAGATTTTTACAAAAGCTGCCGGTCTTAAATAAGCAATGTTGAAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGATTTTTACAAAAGCTGCCGGTCTTAAATAAGCAATGTTGAAAA  795

seq1  GCTTTTCAATCAGATTGTAGACTGCTTTGGAAACTGTTGCCAGACCCAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAATCAGATTGTAGACTGCTTTGGAAACTGTTGCCAGACCCAGT  845

seq1  GAACACTACACTACAATGCCTCATAGTAAGAACTACTTTCTCATTGCTTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTACACTACAATGCCTCATAGTAAGAACTACTTTCTCATTGCTTC  895

seq1  CAAGCTTTAAATCACATGAATTTTTAGAAATATAAATTATTCCTGCAAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTAAATCACATGAATTTTTAGAAATATAAATTATTCCTGCAAAT  945

seq1  AAATAGCCTGACTGGTAATTACGAAATTTAAATTATTTCTAAAATACCAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCTGACTGGTAATTACGAAATTTAAATTATTTCTAAAATACCAA  995

seq1  TAGCAGGGTTAAAAAAAGTTAATCAGTATACCACATAAAGGTTAAGGTAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGGTTAAAAAAAGTTAATCAGTATACCACATAAAGGTTAAGGTAA  1045

seq1  AAAAAATTGAATAAAGTTATGATAAAAATACATTTTTAAGTTGTTCTGAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGAATAAAGTTATGATAAAAATACATTTTTAAGTTGTTCTGAT  1095

seq1  TAATTGTAAAAGAAATACTGAACAACTATAATTTGTTTAGTTTTGATGTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTAAAAGAAATACTGAACAACTATAATTTGTTTAGTTTTGATGTT  1145

seq1  CTGCACTCAAATAATATATTGCATTGAAAAAATGCAATCAATATTGAATT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCAAATAATATATTGCATTGAAAAAATGCAATCAATATTGAATT  1195

seq1  C  1189
      |
seq2  C  1196