BAC Information

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BAC

Clone NameB6Ng01-163I13
Chromosome15 (Build37)
Map Location 39,033,053 - 39,139,505
singlet/doubletdoublet
Overlap geneRims2
Upstream geneOdf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163I13.bB6Ng01-163I13.g
ACCDH956096DH956097
length1,072658
definitionDH956096|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I13, 5' end.DH956097|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,033,053 - 39,034,128)(39,138,848 - 39,139,505)
sequence
gaattcctgcagccggttcagccctgagcctagaggagtcactggttatc
ttgctccttggcatcttaacacataataggtacctaggaagtaatgttga
gctgaactaccatgcaaatgaaacagttcactcattctgtggaaaaaaga
cgattcattgttttgaaagaaaaactatttagggactgtgtattaccatt
gtcttttgtttttattttattttggtctgactaaaaatcaagtagaaagg
tattcaggaaatgtgtaatgtggttttattatgttcgcaacatagtcttt
ttatacaaagtattttgaacacttcttccttctctttctccctacttttt
tttttaaaatcttttccgctcttttcctccctttctttcatttgatagtg
tctttctgtgtagcccaggttgaccttaaatgattcttctgcctctgcct
ttctaatcccaagtgctgggatgaccagtcattgagctaccacacctatt
tatgcttttcaggagatgtgtattgtctttgttctcagcttgggctttct
attaatgttgataggacaacatgttcctcaaatcgaaagaataaagcaca
tccatgacagattaagttaacaagtacatactgtatacacatatgaggag
ttataaatgttttattgtacttagtttaattcatttatttatgcttgaga
cagggtattgctttgtagccctggcttgtttggaatttggtacatagacc
agactggccttaaaactcagagatccacctgtccctgccacccaagtgct
aggctagtattaaaggtatatgctacagtttctggctaatgttttatttt
attttattttattttattttattttaggacagggtctttctacatagccc
tggctgtcctggaattaactgttgtagaccaggctggcctcaaactcaca
cagatctgatcgattctgcctcccaagtgctggtatatccatgtatgccc
ccaccacattcagcttaaattttaatagtgccattttaaagtgggtctga
agttaattttacattttattta
gaattcatgaatgctgctgaggagtggggctgctctaaaccttccataca
gcaagagatgagctgctaaaccagaatagttacagaagtataatgtttca
tgcagaacttaaagggggtggggggagaatcattcttatcccaaatttaa
agtctctgtttcttgtttatcagttttctgaaacaagcgcttcaaaggac
aactcaataactttttatttaaatatagtaactcttaaattcccaagtaa
atggtacttttgaggcggctttcacagccagtgacagtgggaacaattca
ctgaaaacaacaagttatcccacccagtgaaaattccttctgctggctct
cagagatacctgggaggattctggggaggacttggctaattatcccagga
aaatgctgcctcatctgacactggatactcatagtggacccaagacatct
tatctttgggctactttttaaagagagagggagggagagagagagagaga
gagagagagagagagagagagagagagagagagagagagcgctcttttat
tcttttaatccaatcttcatgtatacacctagaaaagatagggcttctat
tatatgtatatgagctctggctttagcaacccaacttccactccaaaatt
actgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39033053_39034128
seq2: B6Ng01-163I13.b_46_1117

seq1  GAATTCCTGCAGCCGGTTCAGCCCTGAGCCTTGAGGAGTCACTGGTTATC  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCCTGCAGCCGGTTCAGCCCTGAGCCTAGAGGAGTCACTGGTTATC  50

seq1  TTGCTCCTTGGCATCTTAACACATAATAGGTACCTAGGAAGTAATGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTGGCATCTTAACACATAATAGGTACCTAGGAAGTAATGTTGA  100

seq1  GCTGAACTACCATGCAAATGAAACAGTTCACTCATTCTGTGGAAAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTACCATGCAAATGAAACAGTTCACTCATTCTGTGGAAAAAAGA  150

seq1  CGATTCATTGTTTTGAAAGAAAAACTATTTAGGGACTGTGTATTACCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCATTGTTTTGAAAGAAAAACTATTTAGGGACTGTGTATTACCATT  200

seq1  GTCTTTTGTTTTTATTTTATTTTGGTCTGACTAAAAATCAAGTAGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTTTTTATTTTATTTTGGTCTGACTAAAAATCAAGTAGAAAGG  250

seq1  TATTCAGGAAATGTGTAATGTGGTTTTATTATGTTCGCAACATAGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAAATGTGTAATGTGGTTTTATTATGTTCGCAACATAGTCTTT  300

seq1  TTATACAAAGTATTTTGAACACTTCTTCCTTCTCTTTCTCCCTACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAAGTATTTTGAACACTTCTTCCTTCTCTTTCTCCCTACTTTTT  350

seq1  TTTTTAAAATCTTTTCCGCTCTTTTCCTCCCTTTCTTTCATTTGATAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATCTTTTCCGCTCTTTTCCTCCCTTTCTTTCATTTGATAGTG  400

seq1  TCTTTCTGTGTAGCCCAGGTTGACCTTAAATGATTCTTCTGCCTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTGTAGCCCAGGTTGACCTTAAATGATTCTTCTGCCTCTGCCT  450

seq1  TTCTAATCCCAAGTGCTGGGATGACCAGTCATTGAGCTACCACACCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCCCAAGTGCTGGGATGACCAGTCATTGAGCTACCACACCTATT  500

seq1  TATGCTTTTCAGGAGATGTGTATTGTCTTTGTTCTCAGCTTGGGCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTTCAGGAGATGTGTATTGTCTTTGTTCTCAGCTTGGGCTTTCT  550

seq1  ATTAATGTTGATAGGACAACATGTTCCTCAAATCGAAAGAATAAAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTGATAGGACAACATGTTCCTCAAATCGAAAGAATAAAGCACA  600

seq1  TCCATGACAGATTAAGTTAACAAGTACATACTGTATACACATATGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACAGATTAAGTTAACAAGTACATACTGTATACACATATGAGGAG  650

seq1  TTATAAATGTTTTATTGTACTTAGTTTAATTCATTTATTTATGCTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGTTTTATTGTACTTAGTTTAATTCATTTATTTATGCTTGAGA  700

seq1  CAGGGTATTGCTTTGTAGCCCTGGCTTGTTTGGAATTTGGTACATAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATTGCTTTGTAGCCCTGGCTTGTTTGGAATTTGGTACATAGACC  750

seq1  AGACTGGCCTTAAAACTCAGAGATCCACCTGTCCCTGCCACCCAAGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCTTAAAACTCAGAGATCCACCTGTCCCTGCCACCCAAGTGCT  800

seq1  AGGCTAGTATTAAAGGTATATGCTACAGTTTCTGGCTAATGTTTTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTATTAAAGGTATATGCTACAGTTTCTGGCTAATGTTTTATTTT  850

seq1  ATTTTATTTTATTTTATTTTATTTTAGGACAGGGTCTTTCTACATAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTATTTTATTTTAGGACAGGGTCTTTCTACATAGCCC  900

seq1  TGGCTGTCCTGGAATTAACTG-TGTAGACCAGGCTGGCCTCAAACTCACA  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAATTAACTGTTGTAGACCAGGCTGGCCTCAAACTCACA  950

seq1  CAGATCTGATCGATTCTGCCTCCCAAGTGCTGGTAATATCCATGTATG-C  998
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  CAGATCTGATCGATTCTGCCTCCCAAGTGCTGGT-ATATCCATGTATGCC  999

seq1  GCCACCACATCCAGCTTAAATTTTTTAATAGTGCAATTTTATAAGTGGTT  1048
       ||||||||| |||||||||  |||||||||||| |||||| ||||||  
seq2  CCCACCACATTCAGCTTAAA--TTTTAATAGTGCCATTTTA-AAGTGG-G  1045

seq1  TCTGAAGTTAA-TTTACAATTTTTATTTA  1076
      ||||||||||| ||||||  |||||||||
seq2  TCTGAAGTTAATTTTACA--TTTTATTTA  1072

seq1: chr15_39138848_39139505
seq2: B6Ng01-163I13.g_69_726 (reverse)

seq1  ATTTCAGTAATTTTGGAGTGGAAGTTGGGTTGCTAATGCCAGAGCTCATG  50
      || ||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  ATATCAGTAATTTTGGAGTGGAAGTTGGGTTGCTAAAGCCAGAGCTCATA  50

seq1  TTCATGTTTTAGAAGCCCTTTC-TTTCTAGGTGTCTACCTGAAGATTGGC  99
      | ||| |  |||||||||| || ||||||||||| ||| |||||||||| 
seq2  TACATATAATAGAAGCCCTATCTTTTCTAGGTGTATACATGAAGATTGGA  100

seq1  TTAATTAGAATAAAAGAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  149
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAA-AAGAATAAAAGAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  149

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTCTTTAAAAAGTAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTCTTTAAAAAGTAGC  199

seq1  CCAAAGATAAGATGTCTTGGGTCCACTATGAGTATCCAGTGTCAGATGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATAAGATGTCTTGGGTCCACTATGAGTATCCAGTGTCAGATGAG  249

seq1  GCAGCATTTTCCTGGGATAATTAGCCAAGTCCTCCCCAGAATCCTCCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTTTCCTGGGATAATTAGCCAAGTCCTCCCCAGAATCCTCCCAG  299

seq1  GTATCTCTGAGAGCCAGCAGAAGGAATTTTCACTGGGTGGGATAACTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTGAGAGCCAGCAGAAGGAATTTTCACTGGGTGGGATAACTTGT  349

seq1  TGTTTTCAGTGAATTGTTCCCACTGTCACTGGCTGTGAAAGCCGCCTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTGAATTGTTCCCACTGTCACTGGCTGTGAAAGCCGCCTCAA  399

seq1  AAGTACCATTTACTTGGGAATTTAAGAGTTACTATATTTAAATAAAAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCATTTACTTGGGAATTTAAGAGTTACTATATTTAAATAAAAAGT  449

seq1  TATTGAGTTGTCCTTTGAAGCGCTTGTTTCAGAAAACTGATAAACAAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTGTCCTTTGAAGCGCTTGTTTCAGAAAACTGATAAACAAGAA  499

seq1  ACAGAGACTTTAAATTTGGGATAAGAATGATTCTCCCCCCACCCCCTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTTTAAATTTGGGATAAGAATGATTCTCCCCCCACCCCCTTTA  549

seq1  AGTTCTGCATGAAACATTATACTTCTGTAACTATTCTGGTTTAGCAGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCATGAAACATTATACTTCTGTAACTATTCTGGTTTAGCAGCTC  599

seq1  ATCTCTTGCTGTATGGAAGGTTTAGAGCAGCCCCACTCCTCAGCAGCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGCTGTATGGAAGGTTTAGAGCAGCCCCACTCCTCAGCAGCATT  649

seq1  CATGAATTC  658
      |||||||||
seq2  CATGAATTC  658