BAC Information

Click to search

BAC

Clone NameB6Ng01-163O23
Chromosome15 (Build37)
Map Location 83,307,122 - 83,486,267
singlet/doubletdoublet
Overlap geneTtll1, Bik, Mcat, Tspo, Ttll12, Scube1
Upstream geneEG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359
Downstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163O23.bB6Ng01-163O23.g
ACCDH956396DH956397
length1,1581,049
definitionDH956396|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O23, 5' end.DH956397|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,485,119 - 83,486,267)(83,307,122 - 83,308,172)
sequence
gaattctcagttaaaaaacaagacaaaacaaaacaaaacacaaaaacata
acgaccagcctgaggttgtcccatcccctgggaaccctaagcttctgtcc
ctatgagggaatgctgggttggggaaacttggggcctgtgaccaccatcc
ctaagtggagaacggacagacttcatggaggagatcctgtgggccatctg
acatccctggaagttgggtcaagaggaggacaccaccgagaggttctgat
gttgaagactgtgtgagatgccagagagatacccgccctatccagtaaat
tctcacccttctcttacctgctatggagattacatttgtccaaggtccag
gggctcttgggacaagtaagcccagagggtcatgataactccttcctaag
gagaaacatatgaggaacgtgtctgcagagggaagccattcccatgatgt
cacctccagggacctctctcccttcccagccatctgaatggatctactaa
ataataggcatgactaactcaaactctcagctctggaattcgatgctttt
ctaatcaggcctggcctcagaatgacttcataagtagataacgcatgtag
acagagtatagacatccagccaaggtctctaggatgatatgttgtcctga
cagtcaccttggccacctcgaataatgaagcagtttcccagaggcctggg
gagagatctgacttagatccttgacctctttctggtggtctccctcccgc
tagacagtggcagtcttcgtttaaataaacttgaacttaccatttttcct
acctcagactagctccttgcgcagtcccttttccatggatgcaggcagcc
gggagcatctgagctgaaggaccctaagtcctccagctacaggcatcact
gaccacatgatgtaggtcgttctcagcatacaccccaggcgacaactaat
tttcttaagtctgtctatctgggcattgctgagttccagggtaagggttc
agggcagtgaggaaacagagcttgagaatactccacaactaggaccatgg
gggaccgtggggtatccgtagaagacatctcttctacctgtgccaagaca
ctagccatgaagaaagagtgaaagaagtaagaactctagaaaatgtatat
atctttga
gaattcaaacaacacacacacagtgtgcacacacacacatacgccaccgc
agcaatgttcacaaacgctgttctagaatttttaaccagtatcttccttt
cctcagccacgggagataagagggcacagttgaacttcctggcagacaag
gaggctaaagctcagagaggtttagtaactagttcgcagtcacacagtaa
gggaagggtccagggccctagatgcctggtcctgccactgagcagttagc
actaaaatcttcccatgagtctttgtgtccccaggctcgcacatatctgg
agagtcatcagcttttccagtctccatgctcaccccctggctattgtccc
atagctgtgaccaggtgtttcctttctgtcacactctggcctccatctct
gtttttcctacatggaagcatcctaatgcctagagccgatcagaaagtca
catggtaaacttccacagcagcttctgccctccaggagctttgtgacctg
ccagaagtccccatcatcctctgggcctgtcccctctgtccggtaaagaa
tgaatctggcctcccaggccacgcacctgatgtgtctctcaagatggctg
tatttttaactccgtgcccttaaagccttgagaagtgccatttgcaaagc
cattaactgtaccacagccctttccactgacactggcatctgtgggaccc
tgcctctctatggagggtggcacagtgcccagggctggcttcctcgatgt
tcgtgcacccctcccagtccctgaagtgcagactggagaaatctgcctac
ctgtaagctgagatcaggcaaagcttctgccaacctggggagggattcaa
cctctcctaaaaccagcagcgtccaaaccccaccttcccaggtggaccat
taaagggtctttgttttctcctgttcttcctaaggagattgctgggcagt
gggttcatggctgacagcagtaagaactcgagattggaaccagggatgtc
tcagtacaaggagggacccactgtggggcctgggtagccacggaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83485119_83486267
seq2: B6Ng01-163O23.b_50_1207 (reverse)

seq1  TCAAAGTAATATCCATTTTCT-TAGTTCTTACTATCTCTC-CTCTCTCTC  48
      ||||||  |||| ||||||||  |||||||||| ||| || |||| ||| 
seq2  TCAAAGATATATACATTTTCTAGAGTTCTTACT-TCTTTCACTCTTTCTT  49

seq1  CACTGCCTGTGTCTTGGCACAGGTAG-AGAGATGTC-TCTACGGATACCC  96
      ||  ||  |||||||||||||||||| ||||||||| |||||||||||||
seq2  CATGGCTAGTGTCTTGGCACAGGTAGAAGAGATGTCTTCTACGGATACCC  99

seq1  C-CGGTCCCCC-TGGTCCTAGTTGTGAGGTA-TCTCAAGCTCTGTTTCCT  143
      | ||||||||| ||||||||||||||  ||| ||||||||||||||||||
seq2  CACGGTCCCCCATGGTCCTAGTTGTGGAGTATTCTCAAGCTCTGTTTCCT  149

seq1  CACTGCCCTG-ACCCTTACCCTGGAACTCAGCAATGCCCAGATAGACAGA  192
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  CACTGCCCTGAACCCTTACCCTGGAACTCAGCAATGCCCAGATAGACAG-  198

seq1  ACTTAAGAAAATTAG-TGTCGCCTGGGGTGTATGCTGAGAACGACCTACA  241
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAAAATTAGTTGTCGCCTGGGGTGTATGCTGAGAACGACCTACA  248

seq1  TCATGTGGTCAGTGATGCCTGTAGCTGGAGGACTTAGGGTCCTTCAGCTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTCAGTGATGCCTGTAGCTGGAGGACTTAGGGTCCTTCAGCTC  298

seq1  AGATGCTCCCGGCTGCCTGCATCCATGGAAAAGGGACTGCGCAAGGAGCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCCCGGCTGCCTGCATCCATGGAAAAGGGACTGCGCAAGGAGCT  348

seq1  AGTCTGAGGTAGG-AAAATGGTAAGTTCAAGTTTATTTAAACGAAGACTG  390
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGGTAGGAAAAATGGTAAGTTCAAGTTTATTTAAACGAAGACTG  398

seq1  CCACTGTCTAGCGGGAGGGAGACCACCAG-AAGAGGTCAAGGATCTAAGT  439
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCACTGTCTAGCGGGAGGGAGACCACCAGAAAGAGGTCAAGGATCTAAGT  448

seq1  CAGATCTCTCCCCAGGCCTCTGGGAAACTGCTTCATTATTCGAGGTGGCC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTCCCCAGGCCTCTGGGAAACTGCTTCATTATTCGAGGTGGCC  498

seq1  AAGGTGACTGTCAGGACAACATATCATCCTAGAGACCTTGGCTGGATGTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACTGTCAGGACAACATATCATCCTAGAGACCTTGGCTGGATGTC  548

seq1  TATACTCTGTCTACATGCGTTATCTACTTATGAAGTCATTCTGAGGCCAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTGTCTACATGCGTTATCTACTTATGAAGTCATTCTGAGGCCAG  598

seq1  GCCTGATTAGAAAAGCATCGAATTCCAGAGCTGAGAGTTTGAGTTAGTCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTAGAAAAGCATCGAATTCCAGAGCTGAGAGTTTGAGTTAGTCA  648

seq1  TGCCTATTATTTAGTAGATCCATTCAGATGGCTGGGAAGGGAGAGAGGTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTATTTAGTAGATCCATTCAGATGGCTGGGAAGGGAGAGAGGTC  698

seq1  CCTGGAGGTGACATCATGGGAATGGCTTCCCTCTGCAGACACGTTCCTCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGTGACATCATGGGAATGGCTTCCCTCTGCAGACACGTTCCTCA  748

seq1  TATGTTTCTCCTTAGGAAGGAGTTATCATGACCCTCTGGGCTTACTTGTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTCCTTAGGAAGGAGTTATCATGACCCTCTGGGCTTACTTGTC  798

seq1  CCAAGAGCCCCTGGACCTTGGACAAATGTAATCTCCATAGCAGGTAAGAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCCCCTGGACCTTGGACAAATGTAATCTCCATAGCAGGTAAGAG  848

seq1  AAGGGTGAGAATTTACTGGATAGGGCGGGTATCTCTCTGGCATCTCACAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGAGAATTTACTGGATAGGGCGGGTATCTCTCTGGCATCTCACAC  898

seq1  AGTCTTCAACATCAGAACCTCTCGGTGGTGTCCTCCTCTTGACCCAACTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAACATCAGAACCTCTCGGTGGTGTCCTCCTCTTGACCCAACTT  948

seq1  CCAGGGATGTCAGATGGCCCACAGGATCTCCTCCATGAAGTCTGTCCGTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATGTCAGATGGCCCACAGGATCTCCTCCATGAAGTCTGTCCGTT  998

seq1  CTCCACTTAGGGATGGTGGTCACAGGCCCCAAGTTTCCCCAACCCAGCAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTAGGGATGGTGGTCACAGGCCCCAAGTTTCCCCAACCCAGCAT  1048

seq1  TCCCTCATAGGGACAGAAGCTTAGGGTTCCCAGGGGATGGGACAACCTCA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATAGGGACAGAAGCTTAGGGTTCCCAGGGGATGGGACAACCTCA  1098

seq1  GGCTGGTCGTTATGTTTTTGTGTTTTGTTTTGTTTTGTCTTGTTTTTTAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTCGTTATGTTTTTGTGTTTTGTTTTGTTTTGTCTTGTTTTTTAA  1148

seq1  CTGAGAATTC  1149
      ||||||||||
seq2  CTGAGAATTC  1158

seq1: chr15_83307122_83308172
seq2: B6Ng01-163O23.g_67_1115

seq1  GAATTCAAACAACACACACACAGTGTGCACACACACACATACGCCACCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAACACACACACAGTGTGCACACACACACATACGCCACCGC  50

seq1  AGCAATGTTCACAAACGCTGTTCTAGAATTTTTAACCAGTATCTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTTCACAAACGCTGTTCTAGAATTTTTAACCAGTATCTTCCTTT  100

seq1  CCTCAGCCACGGGAGATAAGAGGGCACAGTTGAACTTCCTGGCAGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCACGGGAGATAAGAGGGCACAGTTGAACTTCCTGGCAGACAAG  150

seq1  GAGGCTAAAGCTCAGAGAGGTTTAGTAACTAGTTCGCAGTCACACAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAAAGCTCAGAGAGGTTTAGTAACTAGTTCGCAGTCACACAGTAA  200

seq1  GGGAAGGGTCCAGGGCCCTAGATGCCTGGTCCTGCCACTGAGCAGTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGTCCAGGGCCCTAGATGCCTGGTCCTGCCACTGAGCAGTTAGC  250

seq1  ACTAAAATCTTCCCATGAGTCTTTGTGTCCCCAGGCTCGCACATATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATCTTCCCATGAGTCTTTGTGTCCCCAGGCTCGCACATATCTGG  300

seq1  AGAGTCATCAGCTTTTCCAGTCTCCATGCTCACCCCCTGGCTATTGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATCAGCTTTTCCAGTCTCCATGCTCACCCCCTGGCTATTGTCCC  350

seq1  ATAGCTGTGACCAGGTGTTTCCTTTCTGTCACACTCTGGCCTCCATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTGACCAGGTGTTTCCTTTCTGTCACACTCTGGCCTCCATCTCT  400

seq1  GTTTTTCCTACATGGAAGCATCCTAATGCCTAGAGCCGATCAGAAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTACATGGAAGCATCCTAATGCCTAGAGCCGATCAGAAAGTCA  450

seq1  CATGGTAAACTTCCACAGCAGCTTCTGCCCTCCAGGAGCTTTGTGACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAAACTTCCACAGCAGCTTCTGCCCTCCAGGAGCTTTGTGACCTG  500

seq1  CCAGAAGTCCCCATCATCCTCTGGGCCTGTCCCCTCTGTCCGGTAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCCCCATCATCCTCTGGGCCTGTCCCCTCTGTCCGGTAAAGAA  550

seq1  TGAATCTGGCCTCCCAGGCCACGCACCTGATGTGTCTCTCAAGATGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGGCCTCCCAGGCCACGCACCTGATGTGTCTCTCAAGATGGCTG  600

seq1  TATTTTTAACTCCGTGCCCTTAAAGCCTTGAGAAGTGCCATTTGCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAACTCCGTGCCCTTAAAGCCTTGAGAAGTGCCATTTGCAAAGC  650

seq1  CATTAACTGTACCACAGCCCTTTCCACTGACACTGGCATCTGTGGGACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTGTACCACAGCCCTTTCCACTGACACTGGCATCTGTGGGACCC  700

seq1  TGCCTCTCTATGGAGGGTGGCACAGTGCCCAGGGCTGGCTTCCTCGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTATGGAGGGTGGCACAGTGCCCAGGGCTGGCTTCCTCGATGT  750

seq1  TCGTGCACCCCTCCCAGTCCCTGAAGTGCAGACTGGAGAAATCTGCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCACCCCTCCCAGTCCCTGAAGTGCAGACTGGAGAAATCTGCCTAC  800

seq1  CTGTAAGCTGAGATCAGGCAAGGCTTCTGCCAACCTGGGGAGGGATTCAA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGTAAGCTGAGATCAGGCAAAGCTTCTGCCAACCTGGGGAGGGATTCAA  850

seq1  CCTCTCCTAAAACCCAGCAGCGTCCAAACCCCACCTTCCCAGGTTGGACC  900
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  CCTCTCCTAAAA-CCAGCAGCGTCCAAACCCCACCTTCCCAGG-TGGACC  898

seq1  ATTAAAGGGTC-TTGTTTTCTCCTGTTCTTCCTAAGGAGATTGCTGGGCA  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGGTCTTTGTTTTCTCCTGTTCTTCCTAAGGAGATTGCTGGGCA  948

seq1  GTGGGTTCATGGCTGACAGCAGTAAGAACTCGCAGATTGGAACCA-GGAT  998
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GTGGGTTCATGGCTGACAGCAGTAAGAACTCG-AGATTGGAACCAGGGAT  997

seq1  GTCTCAGTACAAGGAGGGACCCACTGT-GGGCTTGGGTAGCCACCGGAAA  1047
      ||||||||||||||||||||||||||| |||| |||||||||||  | ||
seq2  GTCTCAGTACAAGGAGGGACCCACTGTGGGGCCTGGGTAGCCAC--GGAA  1045

seq1  GCTC  1051
      ||||
seq2  GCTC  1049