BAC Information

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BAC

Clone NameB6Ng01-164G19
Chromosome15 (Build37)
Map Location 101,692,706 - 101,833,138
singlet/doubletdoublet
Overlap geneKrt77, Krt76, Krt4, Krt79, Krt78, Krt8
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1
Downstream geneKrt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164G19.bB6Ng01-164G19.g
ACCDH956751DH956752
length4701,065
definitionDH956751|Mus musculus domesticus DNA, BAC clone: B6Ng01-164G19, 5' end.DH956752|Mus musculus domesticus DNA, BAC clone: B6Ng01-164G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,832,663 - 101,833,138)(101,692,706 - 101,693,778)
sequence
agcattccattagaatggattacttgggttattattattattattattat
tattgtaattacggggaagaaaggatttatagtgtgggttgtgggaaggt
aatccgattgttcccacaggatggctttctagtttccccccagtttaaaa
agttagcgctccggcctgagagtgtgaagtgcattttgctcctatggagc
agtcaggctattatccttacaaaaggcttttccctgtaccacgtcttgga
ttgtgcgctctaagatgtgaagggggcagggagggcggggttggttgtgg
acaagtgggaagagggtcgtgggactcccaaggctaaggggtctccaagg
ctgctccaacagggtgggaaggatggaaggagacgtacctgcctgctctc
ttgcttcatcttctgctaaaagtgggcccttgtggagaagggtctcccaa
aagcgcctacctgagccttc
gaattcatacccaagaggctgtcaaactatgcccagcgtcatagtgacaa
gtgtattcacccagttaagttctcatggtggtaggaatgttgtgaaatat
ttggagtcacagagagtgcctctaagatttctaagtgatacattaaaaag
tagaaaactttaaaaaaatgtgctataataaaaataaaagtgacaaaggt
tgtaggggttaagaacctgtttgtaaatcgcacacctgggtttagtgagt
gttttcaggacagttgcttattacaaggcttaggaaaattaggtggcctg
gcacctgtgagttctccagaacaattaactaaaaatgagcaaacaaacaa
aacaggcaggaactctcctatcatattcagtgtcaaggagagaaagataa
tttctgaagtctttattatagacatgacagactttaaggtcaggaggcaa
tagcagtttgaggactgtttatttgggggtgcaaactcgaaacccaagct
caccttggtctggtacagggcctcagcctcatctttgctcttctgtgcaa
ttatttcatactgggctcgtacggcatcgatgatgctgtccaggtccagg
gagcggttattgtccattgacaagatgacattggtatcactgacgtgggt
ttgtatctgggacagctcctgtgagacacagaacagagttcaccccttcc
acccttctccctctaggatgtctggggaagccagaaatctagcctagaaa
ggcctcttcgtgttcccttaaattgttctgtgctatgaaacataaaggga
agggctaagtgtgtttgactaaaggtaaggactaaaggcatctgggcagg
aggaaggagtccaggacctcatcaagcttctcttgtacaaactgctcagc
cttgctgtggcttcatactttttgatgcagcccttgacagaaacagttag
ttgtccttgttgcataaggttcttagaacagtggtttccagtttgagcca
cttgactacccaggttagctcattgcatcttctgttgaatggggcatccc
ataaaggtaggtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101832663_101833138
seq2: B6Ng01-164G19.b_49_524 (reverse)

seq1  GAAGGCTCAGGTAGGCGCTTTTGGGAGCCCCTTCTCCACAAGGGCCCACT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGGCTCAGGTAGGCGCTTTTGGGAGACCCTTCTCCACAAGGGCCCACT  50

seq1  TTTAGCAGAAGATGAAGCAAGAGAGCAGGCAGGTACGTCTCCTTCCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGAAGATGAAGCAAGAGAGCAGGCAGGTACGTCTCCTTCCATCC  100

seq1  TTCCCACCCTGTTGGAGCAGCCTTGGAGACCCCTTAGCCTTGGGAGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCCTGTTGGAGCAGCCTTGGAGACCCCTTAGCCTTGGGAGTCCC  150

seq1  ACGACCCTCTTCCCACTTGTCCACAACCAACCCCGCCCTCCCTGCCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCTCTTCCCACTTGTCCACAACCAACCCCGCCCTCCCTGCCCCCT  200

seq1  TCACATCTTAGAGCGCACAATCCAAGACGTGGTACAGGGAAAAGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTAGAGCGCACAATCCAAGACGTGGTACAGGGAAAAGCCTTTT  250

seq1  GTAAGGATAATAGCCTGACTGCTCCATAGGAGCAAAATGCACTTCACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATAATAGCCTGACTGCTCCATAGGAGCAAAATGCACTTCACACT  300

seq1  CTCAGGCCGGAGCGCTAACTTTTTAAACTGGGGGGAAACTAGAAAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCGGAGCGCTAACTTTTTAAACTGGGGGGAAACTAGAAAGCCAT  350

seq1  CCTGTGGGAACAATCGGATTACCTTCCCACAACCCACACTATAAATCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGAACAATCGGATTACCTTCCCACAACCCACACTATAAATCCTT  400

seq1  TCTTCCCCGTAATTACAATAATAATAATAATAATAATAATAACCCAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCGTAATTACAATAATAATAATAATAATAATAATAACCCAAGTA  450

seq1  ATCCATTCTAATGGAATGCTGAATTC  476
      ||||||||||||||||||||||||||
seq2  ATCCATTCTAATGGAATGCTGAATTC  476

seq1: chr15_101692706_101693778
seq2: B6Ng01-164G19.g_64_1128

seq1  GAATTCATACCCAAGAGGCTGTCAAACTATGCCCAGCGTCATAGTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCCAAGAGGCTGTCAAACTATGCCCAGCGTCATAGTGACAA  50

seq1  GTGTATTCACCCAGTTAAGTTCTCATGGTGGTAGGAATGTTGTGAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCACCCAGTTAAGTTCTCATGGTGGTAGGAATGTTGTGAAATAT  100

seq1  TTGGAGTCACAGAGAGTGCCTCTAAGATTTCTAAGTGATACATTAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCACAGAGAGTGCCTCTAAGATTTCTAAGTGATACATTAAAAAG  150

seq1  TAGAAAACTTTAAAAAAATGTGCTATAATAAAAATAAAAGTGACAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACTTTAAAAAAATGTGCTATAATAAAAATAAAAGTGACAAAGGT  200

seq1  TGTAGGGGTTAAGAACCTGTTTGTAAATCGCACACCTGGGTTTAGTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGTTAAGAACCTGTTTGTAAATCGCACACCTGGGTTTAGTGAGT  250

seq1  GTTTTCAGGACAGTTGCTTATTACAAGGCTTAGGAAAATTAGGTGGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGGACAGTTGCTTATTACAAGGCTTAGGAAAATTAGGTGGCCTG  300

seq1  GCACCTGTGAGTTCTCCAGAACAATTAACTAAAAATGAGCAAACAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTGAGTTCTCCAGAACAATTAACTAAAAATGAGCAAACAAACAA  350

seq1  AACAGGCAGGAACTCTCCTATCATATTCAGTGTCAAGGAGAGAAAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCAGGAACTCTCCTATCATATTCAGTGTCAAGGAGAGAAAGATAA  400

seq1  TTTCTGAAGTCTTTATTATAGACATGACAGACTTTAAGGTCAGGAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGTCTTTATTATAGACATGACAGACTTTAAGGTCAGGAGGCAA  450

seq1  TAGCAGTTTGAGGACTGTTTATTTGGGGGTGCAAACTCGAAACCCAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTTGAGGACTGTTTATTTGGGGGTGCAAACTCGAAACCCAAGCT  500

seq1  CACCTTGGTCTGGTACAGGGCCTCAGCCTCATCTTTGCTCTTCTGTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGGTCTGGTACAGGGCCTCAGCCTCATCTTTGCTCTTCTGTGCAA  550

seq1  TTATTTCATACTGGGCTCGTACGGCATCGATGATGCTGTCCAGGTCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATACTGGGCTCGTACGGCATCGATGATGCTGTCCAGGTCCAGG  600

seq1  GAGCGGTTATTGTCCATTGACAAGATGACATTGGTATCACTGACGTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGTTATTGTCCATTGACAAGATGACATTGGTATCACTGACGTGGGT  650

seq1  TTGTATCTGGGACAGCTCCTGTGAGACACAGAACAGAGTTCACCCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGGGACAGCTCCTGTGAGACACAGAACAGAGTTCACCCCTTCC  700

seq1  ACCCTTCTCCCTCTAGGATGTCTGGGGAAGCCAGAAATCTAGCCTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTCCCTCTAGGATGTCTGGGGAAGCCAGAAATCTAGCCTAGAAA  750

seq1  GGCCTCTTCGTGTTCCCTTAAATTGTTCTGTGCTATGAAACATAAAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTCGTGTTCCCTTAAATTGTTCTGTGCTATGAAACATAAAGGGA  800

seq1  AGGGCTAAGTGTGTTTTGACTAAAGGTAAGGACTAAAGGCATCTGGGCAG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAGTGTG-TTTGACTAAAGGTAAGGACTAAAGGCATCTGGGCAG  849

seq1  GAGGAAGGAGTCCAGGACCTCATCAAGCTTCTCTTGTACAAACTGCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAGTCCAGGACCTCATCAAGCTTCTCTTGTACAAACTGCTCAG  899

seq1  CCTTGCTGTGGCTTCAATACCTTTTTGATGCAGGCCCTTGACAGACACAG  950
      ||||||||||||||| ||| |||||||||||| |||||||||||| ||||
seq2  CCTTGCTGTGGCTTC-ATA-CTTTTTGATGCA-GCCCTTGACAGAAACAG  946

seq1  TTAGTTGTCCCTGGTTGCCATAAGGGTTCTTAGAAACAGTGGGTATCCAG  1000
      |||||||| ||| |||| ||||| ||||||||| |||||| ||| |||||
seq2  TTAGTTGT-CCTTGTTG-CATAA-GGTTCTTAG-AACAGT-GGTTTCCAG  991

seq1  TTTGGAGCCACTTGACTA-CCAGGTTAGCTCA-TGCATTCTTCTGTTGAA  1048
      ||| |||||||||||||| ||||||||||||| |||| ||||||||||||
seq2  TTT-GAGCCACTTGACTACCCAGGTTAGCTCATTGCA-TCTTCTGTTGAA  1039

seq1  T-GGGCATCCCCATAAGGTAGGTAGA  1073
      | |||||||||   ||||||||||||
seq2  TGGGGCATCCCATAAAGGTAGGTAGA  1065