BAC Information

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BAC

Clone NameB6Ng01-164L05
Chromosome15 (Build37)
Map Location 84,832,122 - 84,996,638
singlet/doubletdoublet
Overlap geneLOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2
Upstream gene4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik
Downstream geneFbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164L05.bB6Ng01-164L05.g
ACCDH956953DH956954
length1,1771,066
definitionDH956953|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L05, 5' end.DH956954|Mus musculus domesticus DNA, BAC clone: B6Ng01-164L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,995,454 - 84,996,638)(84,832,122 - 84,833,185)
sequence
gaattcagttggcaaacatatactgagtaccttgtttaaagctatgtgct
atgtaattcccttagaacatgcgtccccattgttcatggccttacctaga
gagagagagtaagagaacgtagaaggtgaaggtgcagagctgaagcttgc
cctgccacgagacggccacacaatggccaagcgtgctttcaggagcaaga
tgcctgagttccagtcctcactgtctgtgtgacttagtcgccaagggctc
agagttctcatctgaagctaggagccatctgagggtggcactctcaagtg
gtggtccccaggatacggagaaaggagcttcgtgttcctttctgctggag
tctgtgaagccatcagaaccccaaagtgagctcttctgagctcgtcgctt
taggcgtgtcaggacaccccggcagggaaggaaagaggaataattcattt
gcctaacgtatgtttatttcctggctgccttctaaatgcaaagcaaacaa
atgcactcaaatctgtaattaattagaagccccagctgtggcagcaggca
agcatacctgcactacagagatgctggcccaggtccaaggcgctaatcca
ggtgagggatggtgggcctatgtgggcctccatacagagcaaatggttct
caacgtgtgggtcccaccctttcacaggcatggcctaagaccatcagaaa
acacagacattcaaattctgattcacaacagcagcaaaattacagttatg
aagaagcaatgaaaacaattttatgtttgggggccgccgccacagtgtga
ggaactgtattaaagggtcgcagtgttaggaaggttgagaaccgctgctg
tagagtcatcagggcacacagcccttgtgaaggcagtaggatgtgaaaag
gaaatcaagaggcgcttgaagctttagccttcttcctcggtagaccgaca
ttgccttcactaatgctttggcgggtcacagggactgactgagcctttgt
ctgccgtcagcatcttctcagtgggctcttgacccttcagacttcctttt
gccacttacttccatcatcccagaaccgggagccctcgtagcagagcttc
gtgacttctttgatgagagagactaatgggtgaggggtactctcacaggg
cccgtgactggacctcaaagctgctgc
gaattccgcctccagggagtcttcctggcctgggacgggccttgtttagt
cagccttgtctgcgcagttactcattgacatcttctaagggacagtcaca
ttcacaggctggaagtaaggctgcatcactcaccatcccggaatgatcct
caggggatacctttgagggctggagccttttgcaacagtctggtatctta
ggtggaggaaccctgcctgagaactcttacttaatcatgctcccttaggg
ctgactagtccttctgagcccggaaaaagaggcttctaggcttgccctga
aaatgaccttggtgtccaccttggccttgcttagactatttccagatggt
cctggtccttctgagcctctgcttgctggcatggaaggttcattcgagaa
acaggtcctgcatttgggagtagttacaaggctccgcttaaaagtggaca
cctataacacatagtctggaagacattctgtcatccctgaagcaatgtct
ctctcgtggttggatttgaatgtgctagaacattcagccctgggtctgtg
gctggcccaggtgctggcccctggctcacatgagcacagtgcagatcatg
ccaagacaggactgagactgtctggattcaaatgctagcttctgctctcc
atagctgtatgtcaggaggaaatggtcaaaacctacgtgtgccagggcta
ccccgaggattcccaggtaaaggttaatgattagttttgctcttgggcta
aaaagccaccaccagatgtccagggagctgggagagaaaggataaagctg
gcttggacctgggatggccgtgaactctgagaactaggcttaggaatgcc
ctaaggctgtccttaccttttcctagagtgacagcacatggggtatgggg
agggtctgtcttctagagaagattttgcccagggggtcagaagttcaagg
tcctttcatgagattaggagatgacctatataagtattatgcaggaagct
tggggcctcgggcttattttcctgtagtctttagagttattatgctgctt
cttccagactgcccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84995454_84996638
seq2: B6Ng01-164L05.b_48_1224 (reverse)

seq1  GCAGCAGCTTTTGAGT-CAGTCAC-GGCCCTGTGAG-TAACCCCTCACCC  47
      |||||||||||   || ||||||| |||||||||||   |||||||||||
seq2  GCAGCAGCTTTGAGGTCCAGTCACGGGCCCTGTGAGAGTACCCCTCACCC  50

seq1  ATTAGTCTCTCTCATCAAAAGAAGTCACGAAGCACCCTGCTACGGAGGGG  97
      |||||||||||||||| |||||||||||||||  | ||||||||   |||
seq2  ATTAGTCTCTCTCATC-AAAGAAGTCACGAAG--CTCTGCTACG--AGGG  95

seq1  CTCC--GGTCTGGGATGATTGAAAGTAAAGTTGGCAAAAGGAAGGTCCTG  145
      ||||  | |||||||||| || ||||||   |||||||||||||   |||
seq2  CTCCCGGTTCTGGGATGA-TGGAAGTAA--GTGGCAAAAGGAAG--TCTG  140

seq1  AAGGGTC-AGAGCCCACTGGAGGAGATGCTGACGGCAGACCAAAGGCTCA  194
      ||||||| |||||||||| ||| |||||||||||||||| ||||||||||
seq2  AAGGGTCAAGAGCCCACT-GAGAAGATGCTGACGGCAGA-CAAAGGCTCA  188

seq1  GTCAGTCCCTGTGGACCCG-CAAAGCATTAGTGGAAGGCAATGTCGGTCT  243
      |||||||||||| |||||| |||||||||||| |||||||||||||||||
seq2  GTCAGTCCCTGT-GACCCGCCAAAGCATTAGT-GAAGGCAATGTCGGTCT  236

seq1  ACCGAGGAAGAAGGCTAAAGCTTCAAGCGCCTCTTGATTTCCTTTTCACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGAAGAAGGCTAAAGCTTCAAGCGCCTCTTGATTTCCTTTTCACA  286

seq1  TCCTACTGCCTTTCACAAGGGCTGTGTGCCCTGATGACTCTACAGCAGCG  343
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGCC-TTCACAAGGGCTGTGTGCCCTGATGACTCTACAGCAGCG  335

seq1  GTTCTCAACCTTCCTAACACTGCGACCCTTTAATACAGTTCCTCACACTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAACCTTCCTAACACTGCGACCCTTTAATACAGTTCCTCACACTG  385

seq1  TGGCGGCGGCCCCCAAACATAAAATTGTTTTCATTGCTTCTTCATAACTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGCGGCCCCCAAACATAAAATTGTTTTCATTGCTTCTTCATAACTG  435

seq1  TAATTTTGCTGCTGTTGTGAATCAGAATTTGAATGTCTGTGTTTTCTGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCTGCTGTTGTGAATCAGAATTTGAATGTCTGTGTTTTCTGAT  485

seq1  GGTCTTAGGCCATGCCTGTGAAAGGGTGGGACCCACACGTTGAGAACCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAGGCCATGCCTGTGAAAGGGTGGGACCCACACGTTGAGAACCAT  535

seq1  TTGCTCTGTATGGAGGCCCACATAGGCCCACCATCCCTCACCTGGATTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTATGGAGGCCCACATAGGCCCACCATCCCTCACCTGGATTAG  585

seq1  CGCCTTGGACCTGGGCCAGCATCTCTGTAGTGCAGGTATGCTTGCCTGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGGACCTGGGCCAGCATCTCTGTAGTGCAGGTATGCTTGCCTGCT  635

seq1  GCCACAGCTGGGGCTTCTAATTAATTACAGATTTGAGTGCATTTGTTTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCTGGGGCTTCTAATTAATTACAGATTTGAGTGCATTTGTTTGC  685

seq1  TTTGCATTTAGAAGGCAGCCAGGAAATAAACATACGTTAGGCAAATGAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTAGAAGGCAGCCAGGAAATAAACATACGTTAGGCAAATGAAT  735

seq1  TATTCCTCTTTCCTTCCCTGCCGGGGTGTCCTGACACGCCTAAAGCGACG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCTTTCCTTCCCTGCCGGGGTGTCCTGACACGCCTAAAGCGACG  785

seq1  AGCTCAGAAGAGCTCACTTTGGGGTTCTGATGGCTTCACAGACTCCAGCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAAGAGCTCACTTTGGGGTTCTGATGGCTTCACAGACTCCAGCA  835

seq1  GAAAGGAACACGAAGCTCCTTTCTCCGTATCCTGGGGACCACCACTTGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAACACGAAGCTCCTTTCTCCGTATCCTGGGGACCACCACTTGAG  885

seq1  AGTGCCACCCTCAGATGGCTCCTAGCTTCAGATGAGAACTCTGAGCCCTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACCCTCAGATGGCTCCTAGCTTCAGATGAGAACTCTGAGCCCTT  935

seq1  GGCGACTAAGTCACACAGACAGTGAGGACTGGAACTCAGGCATCTTGCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTAAGTCACACAGACAGTGAGGACTGGAACTCAGGCATCTTGCTC  985

seq1  CTGAAAGCACGCTTGGCCATTGTGTGGCCGTCTCGTGGCAGGGCAAGCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCACGCTTGGCCATTGTGTGGCCGTCTCGTGGCAGGGCAAGCTT  1035

seq1  CAGCTCTGCACCTTCACCTTCTACGTTCTCTTACTCTCTCTCTCTAGGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGCACCTTCACCTTCTACGTTCTCTTACTCTCTCTCTCTAGGTA  1085

seq1  AGGCCATGAACAATGGGGACGCATGTTCTAAGGGAATTACATAGCACATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGAACAATGGGGACGCATGTTCTAAGGGAATTACATAGCACATA  1135

seq1  GCTTTAAACAAGGTACTCAGTATATGTTTGCCAACTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAACAAGGTACTCAGTATATGTTTGCCAACTGAATTC  1177

seq1: chr15_84832122_84833185
seq2: B6Ng01-164L05.g_65_1130

seq1  GAATTCCGCCTCCAGGGAGTCTTCCTGGCCTGGGACGGGCCTTGTTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCCTCCAGGGAGTCTTCCTGGCCTGGGACGGGCCTTGTTTAGT  50

seq1  CAGCCTTGTCTGCGCAGTTACTCATTGACATCTTCTAAGGGACAGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGTCTGCGCAGTTACTCATTGACATCTTCTAAGGGACAGTCACA  100

seq1  TTCACAGGCTGGAAGTAAGGCTGCATCACTCACCATCCCGGAATGATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGCTGGAAGTAAGGCTGCATCACTCACCATCCCGGAATGATCCT  150

seq1  CAGGGGATACCTTTGAGGGCTGGAGCCTTTTGCAACAGTCTGGTATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATACCTTTGAGGGCTGGAGCCTTTTGCAACAGTCTGGTATCTTA  200

seq1  GGTGGAGGAACCCTGCCTGAGAACTCTTACTTAATCATGCTCCCTTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGAACCCTGCCTGAGAACTCTTACTTAATCATGCTCCCTTAGGG  250

seq1  CTGACTAGTCCTTCTGAGCCCGGAAAAAGAGGCTTCTAGGCTTGCCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGTCCTTCTGAGCCCGGAAAAAGAGGCTTCTAGGCTTGCCCTGA  300

seq1  AAATGACCTTGGTGTCCACCTTGGCCTTGCTTAGACTATTTCCAGATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTTGGTGTCCACCTTGGCCTTGCTTAGACTATTTCCAGATGGT  350

seq1  CCTGGTCCTTCTGAGCCTCTGCTTGCTGGCATGGAAGGTTCATTCGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTTCTGAGCCTCTGCTTGCTGGCATGGAAGGTTCATTCGAGAA  400

seq1  ACAGGTCCTGCATTTGGGAGTAGTTACAAGGCTCCGCTTAAAAGTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCCTGCATTTGGGAGTAGTTACAAGGCTCCGCTTAAAAGTGGACA  450

seq1  CCTATAACACATAGTCTGGAAGACATTCTGTCATCCCTGAAGCAATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACACATAGTCTGGAAGACATTCTGTCATCCCTGAAGCAATGTCT  500

seq1  CTCTCGTGGTTGGATTTGAATGTGCTAGAACATTCAGCCCTGGGTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTGGTTGGATTTGAATGTGCTAGAACATTCAGCCCTGGGTCTGTG  550

seq1  GCTGGCCCAGGTGCTGGCCCCTGGCTCACATGAGCACAGTGCAGATCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCAGGTGCTGGCCCCTGGCTCACATGAGCACAGTGCAGATCATG  600

seq1  CCAAGACAGGACTGAGACTGTCTGGATTCAAATGCTAGCTTCTGCTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGGACTGAGACTGTCTGGATTCAAATGCTAGCTTCTGCTCTCC  650

seq1  ATAGCTGTATGTCAGGAGGAAATGGTCAAAACCTACGTGTGCCAGGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTATGTCAGGAGGAAATGGTCAAAACCTACGTGTGCCAGGGCTA  700

seq1  CCCCGAGGATTCCCAGGTAAAGGTTAATGATTAGTTTTGCTCTTGGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGGATTCCCAGGTAAAGGTTAATGATTAGTTTTGCTCTTGGGCTA  750

seq1  AAAAGCCACCACCAGATGTCCAGGGAGCTGGGAGAGAAAGGATAAAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCACCACCAGATGTCCAGGGAGCTGGGAGAGAAAGGATAAAGCTG  800

seq1  GCTTGGACCTGGGATGGCCGTGAACTCTGAGAACTAGGCTTAGGAATGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACCTGGGATGGCCGTGAACTCTGAGAACTAGGCTTAGGAATGCC  850

seq1  CT-AGGCTGTCCTTACCTTTTCCTAGAGTGACAGCACATGGGGTATGGGG  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTGTCCTTACCTTTTCCTAGAGTGACAGCACATGGGGTATGGGG  900

seq1  AGGGTCTGTTCTCTAGAGAGGACTTTGCCCAGGGGGGTCAG-AGTTC-AG  947
      |||||||||  |||||||| || |||||||| ||||||||| ||||| ||
seq2  AGGGTCTGTCTTCTAGAGAAGATTTTGCCCA-GGGGGTCAGAAGTTCAAG  949

seq1  GTCCTTTCATGAGGATGTAGGAGATGACC-ATA-AAGTAATAGGCAGGAG  995
      |||||||||||| ||| |||||||||||| ||| ||||| || |||||| 
seq2  GTCCTTTCATGA-GAT-TAGGAGATGACCTATATAAGTATTATGCAGGAA  997

seq1  GCCTGGGG-CTCGGGCTTAATTTCCTGTAGTC-TTAGAGTCATTATGGCT  1043
      || ||||| |||||||||| |||||||||||| ||||||| ||||| |||
seq2  GCTTGGGGCCTCGGGCTTATTTTCCTGTAGTCTTTAGAGTTATTAT-GCT  1046

seq1  GCTTCTTCCCAGACTGCCCAA  1064
      ||||||| |||||||||||||
seq2  GCTTCTT-CCAGACTGCCCAA  1066