BAC Information

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BAC

Clone NameB6Ng01-165I11
Chromosome15 (Build37)
Map Location 22,792,832 - 22,924,458
singlet/doubletdoublet
Overlap geneCdh18
Upstream geneLOC100040351, EG545091
Downstream geneLOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165I11.bB6Ng01-165I11.g
ACCDH957564DH957565
length1,2121,133
definitionDH957564|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I11, 5' end.DH957565|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,923,242 - 22,924,458)(22,792,832 - 22,793,966)
sequence
gaattctctataaagacagaagtgtttatttattttttctgagggtactg
tgggggcatccacagaaaaataatgactctaaaaccaaacaaaacactta
taaaccattatcctagtattggctctctgttcaggaggtggctgcaagca
ttgaagaaggcaaacgtgttacaagaaaatgaagatgctatcatgtccct
agctgacctacagggtctttgataaggtgtggaatccttcaacaatggcc
tccaaagagttctgctgactaaattagtcatttagctcatgtcatatcat
ttgcttcatgacttcatagtttttgttctctctggaatcaatactcatag
tttcttctcaatttttctagaaagatgcattcagaaagccctttgattca
taaatctttacactccgaggcagagatcaacaacctctattaccatgtat
actattcagacttttatttctaagtaaaatagcaactctatgtcgtgtaa
aagctttactttatgctttcaagggatttgctaaagggtagaggttttat
ttttaccctttgcagtatgagggaaaagccactgaaatttttgcaaatca
caagaattttactaggatgcaagaaaaactctgaacttgtgttaaatggt
ttcccagtttttgattctcttataggtaattgatcatatttctatctaag
taagtaacaatgatgtaaaacgtataaaataagttgatacacttttaaac
tagtgggtagaaaatgtcaacagtataattattattttaaataggagcaa
tgttttaaattttaatccttctttctaaaattgaccagtgtgtttgttgc
acaaataaaattttcattcttttcaagaaaataatctttgggtcactttt
aactgctgtcatcttctcatcatcatctctttgtcttcagattcattctc
ctttaattaattcagcattgcccattgttaggacaactcaaagttataat
gctcatacttgttttctgggctaaccacccagaaacattttttcattact
ttcaacatcccttgtctgtcacataaatcgttacatggtttatattcctt
ggtccctgattttgctgtggaaaaataatttatagagtaggcactaccct
ttaaatgggacaaaggtactataaaattacctgtactgcatctacattac
ataaaggtacac
gaattccatggaggaactcgtgtactggagaacccacttccatttaaaga
tattgccaaatattgtgctttccagagagaataaacagattgattttcct
gattgcttcaacaatgaaaaggcactgataaaaaagaaatcaacagacca
agtagctaaaaaaaatattgagggtacatagtgcttgtggtgtttgtata
cacataaatatatgtatatctatatatagttatttcatctgaaacaaaaa
aaaatattttctctatacgtttggacatgttacttagtgaaatacaacat
gctggaagaaaaaaaaatagactatttttcactatttgttgtgacaggaa
cagaaaatgtgtccaggcagagagagagtttcagctactagtatttttta
tcttaggttaaaaggcagtatttgtatgtggatagccaattgtaacaagg
aacaaaaataaaacagggaagtgattacacaactctgtagtataagggaa
tagtctaagtcaataagaagcatttcatttcatctttcacaccaaggaga
tcttgtagaccaagcacaacactacaggtgatccagagaaaggacaaata
atatgaagtcacagtgagtgtactctttgctttagctgtttgtgagtgtt
cacaagagtgatttgatgaagcctaaaattataaaagtaacatttgtgac
tgaattatgtaaaaatttgtgtattcgtataagttagaattatttggaaa
gcaaaaccacttgagagtattccactaattctgggttttatatttcagtt
aattttggcttactaattcaaagcaacttctgtttctaaatgtcactgaa
gaaggaaatatttggaattgagtatacataccttaatatgtcattgttat
aatctctcagagctatagttgacattggatattctgaaaacagtttatta
gataacattgatatacccaaaccacatttatctacaccggcatgattcat
agaacttctagttttaatttgccatctgttttctcaatagcacgaatatt
gaaaggagcatggaataccagaacctaggttatttggacccatgatccga
cattctggtctttaaagtggagtatatgtaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22923242_22924458
seq2: B6Ng01-165I11.b_43_1254 (reverse)

seq1  GTGTACCTTTATGTAAATGTAGATGCAAAGTAACAGTAATATTTTATAGT  50
      |||||||||||||| |||||||||||  ||||   |||  ||||||||||
seq2  GTGTACCTTTATGT-AATGTAGATGC--AGTACAGGTA--ATTTTATAGT  45

seq1  ACATATTGTCACATTTTAAGGGTAGTTGCCTACTCTATAAATTATATTT-  99
      || | ||||| ||||| |||||||| ||||||||||||||||||| ||| 
seq2  ACCT-TTGTCCCATTTAAAGGGTAG-TGCCTACTCTATAAATTATTTTTC  93

seq1  CACAGCAAAATACAGGAACAAGGAA-ATAAAACATGTAACGAATAATGGT  148
      |||||||||||   ||| ||||||| ||||| |||||||||| | || ||
seq2  CACAGCAAAATCAGGGACCAAGGAATATAAACCATGTAACGATTTAT-GT  142

seq1  GACAGAC-AGAGATGTTGAAAGTAATGAAAAAATG-TTCTGGGTGGTTAG  196
      ||||||| || |||||||||||||||||||||||| ||||||||||||||
seq2  GACAGACAAGGGATGTTGAAAGTAATGAAAAAATGTTTCTGGGTGGTTAG  192

seq1  CCCAAGAAACAAGTATGAGCATTATAACTTTGAGTTGTCCTAACAATGGG  246
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAACAAGTATGAGCATTATAACTTTGAGTTGTCCTAACAATGGG  242

seq1  CAATGCCTGAATTAATTAAAGGAGAATGAATCTGAAGACAAAGAGATGAT  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATG-CTGAATTAATTAAAGGAGAATGAATCTGAAGACAAAGAGATGAT  291

seq1  GATGAGAAGATGACAGCAGTTAAAAGTGACCCAAAGATTATTTTCTTGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAGATGACAGCAGTTAAAAGTGACCCAAAGATTATTTTCTTGAA  341

seq1  AAGAATGAAAATTTTATTTGTGCAACAAACACACTGGTCAATTTTAGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAAAATTTTATTTGTGCAACAAACACACTGGTCAATTTTAGAAA  391

seq1  GAAGGATTAAAATTTAAAACATTGCTCCTATTTAAAATAATAATTATACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTAAAATTTAAAACATTGCTCCTATTTAAAATAATAATTATACT  441

seq1  GTTGACATTTTCTACCCACTAGTTTAAAAGTGTATCAACTTATTTTATAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATTTTCTACCCACTAGTTTAAAAGTGTATCAACTTATTTTATAC  491

seq1  GTTTTACATCATTGTTACTTACTTAGATAGAAATATGATCAATTACCTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACATCATTGTTACTTACTTAGATAGAAATATGATCAATTACCTAT  541

seq1  AAGAGAATCAAAAACTGGGAAACCATTTAACACAAGTTCAGAGTTTTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATCAAAAACTGGGAAACCATTTAACACAAGTTCAGAGTTTTTCT  591

seq1  TGCATCCTAGTAAAATTCTTGTGATTTGCAAAAATTTCAGTGGCTTTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTAGTAAAATTCTTGTGATTTGCAAAAATTTCAGTGGCTTTTCC  641

seq1  CTCATACTGCAAAGGGTAAAAATAAAACCTCTACCCTTTAGCAAATCCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTGCAAAGGGTAAAAATAAAACCTCTACCCTTTAGCAAATCCCT  691

seq1  TGAAAGCATAAAGTAAAGCTTTTACACGACATAGAGTTGCTATTTTACTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATAAAGTAAAGCTTTTACACGACATAGAGTTGCTATTTTACTT  741

seq1  AGAAATAAAAGTCTGAATAGTATACATGGTAATAGAGGTTGTTGATCTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAAGTCTGAATAGTATACATGGTAATAGAGGTTGTTGATCTCT  791

seq1  GCCTCGGAGTGTAAAGATTTATGAATCAAAGGGCTTTCTGAATGCATCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGAGTGTAAAGATTTATGAATCAAAGGGCTTTCTGAATGCATCTT  841

seq1  TCTAGAAAAATTGAGAAGAAACTATGAGTATTGATTCCAGAGAGAACAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAATTGAGAAGAAACTATGAGTATTGATTCCAGAGAGAACAAA  891

seq1  AACTATGAAGTCATGAAGCAAATGATATGACATGAGCTAAATGACTAATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGAAGTCATGAAGCAAATGATATGACATGAGCTAAATGACTAATT  941

seq1  TAGTCAGCAGAACTCTTTGGAGGCCATTGTTGAAGGATTCCACACCTTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGCAGAACTCTTTGGAGGCCATTGTTGAAGGATTCCACACCTTAT  991

seq1  CAAAGACCCTGTAGGTCAGCTAGGGACATGATAGCATCTTCATTTTCTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCCTGTAGGTCAGCTAGGGACATGATAGCATCTTCATTTTCTTG  1041

seq1  TAACACGTTTGCCTTCTTCAATGCTTGCAGCCACCTCCTGAACAGAGAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGTTTGCCTTCTTCAATGCTTGCAGCCACCTCCTGAACAGAGAGC  1091

seq1  CAATACTAGGATAATGGTTTATAAGTGTTTTGTTTGGTTTTAGAGTCATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTAGGATAATGGTTTATAAGTGTTTTGTTTGGTTTTAGAGTCATT  1141

seq1  ATTTTTCTGTGGATGCCCCCACAGTACCCTCAGAAAAAATAAATAAACAC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTGGATGCCCCCACAGTACCCTCAGAAAAAATAAATAAACAC  1191

seq1  TTCTGTCTTTATAGAGAATTC  1217
      |||||||||||||||||||||
seq2  TTCTGTCTTTATAGAGAATTC  1212

seq1: chr15_22792832_22793966
seq2: B6Ng01-165I11.g_68_1200

seq1  GAATTCCATGGAGGAACTCGTGTACTGGAGAACCCACTTCCATTTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAGGAACTCGTGTACTGGAGAACCCACTTCCATTTAAAGA  50

seq1  TATTGCCAAATATTGTGCTTTCCAGAGAGAATAAACAGATTGATTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCAAATATTGTGCTTTCCAGAGAGAATAAACAGATTGATTTTCCT  100

seq1  GATTGCTTCAACAATGAAAAGGCACTGATAAAAAAGAAATCAACAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTCAACAATGAAAAGGCACTGATAAAAAAGAAATCAACAGACCA  150

seq1  AGTAGCTAAAAAAAATATTGAGGGTACATAGTGCTTGTGGTGTTTGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAAAAAAAATATTGAGGGTACATAGTGCTTGTGGTGTTTGTATA  200

seq1  CACATAAATATATGTATATCTATATATAGTTATTTCATCTGAAACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATATATGTATATCTATATATAGTTATTTCATCTGAAACAAAAA  250

seq1  AAAATATTTTCTCTATACGTTTGGACATGTTACTTAGTGAAATACAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTCTCTATACGTTTGGACATGTTACTTAGTGAAATACAACAT  300

seq1  GCTGGAAGAAAAAAAAATAGACTATTTTTCACTATTTGTTGTGACAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGAAAAAAAAATAGACTATTTTTCACTATTTGTTGTGACAGGAA  350

seq1  CAGAAAATGTGTCCAGGCAGAGAGAGAGTTTCAGCTACTAGTATTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTGTCCAGGCAGAGAGAGAGTTTCAGCTACTAGTATTTTTTA  400

seq1  TCTTAGGTTAAAAGGCAGTATTTGTATGTGGATAGCCAATTGTAACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTTAAAAGGCAGTATTTGTATGTGGATAGCCAATTGTAACAAGG  450

seq1  AACAAAAATAAAACAGGGAAGTGATTACACAACTCTGTAGTATAAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATAAAACAGGGAAGTGATTACACAACTCTGTAGTATAAGGGAA  500

seq1  TAGTCTAAGTCAATAAGAAGCATTTCATTTCATCTTTCACACCAAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAAGTCAATAAGAAGCATTTCATTTCATCTTTCACACCAAGGAGA  550

seq1  TCTTGTAGACCAAGCACAACACTACAGGTGATCCAGAGAAAGGACAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGACCAAGCACAACACTACAGGTGATCCAGAGAAAGGACAAATA  600

seq1  ATATGAAGTCACAGTGAGTGTACTCTTTGCTTTAGCTGTTTGTGAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGTCACAGTGAGTGTACTCTTTGCTTTAGCTGTTTGTGAGTGTT  650

seq1  CACAAGAGTGATTTGATGAAGCCTAAAATTATAAAAGTAACATTTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGTGATTTGATGAAGCCTAAAATTATAAAAGTAACATTTGTGAC  700

seq1  TGAATTATGTAAAAATTTGTGTATTCGTATAAGTTAGAATTATTTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATGTAAAAATTTGTGTATTCGTATAAGTTAGAATTATTTGGAAA  750

seq1  GCAAAACCACTTGAGAGTATTCCACTAATTCTGGGTTTTATATTTCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCACTTGAGAGTATTCCACTAATTCTGGGTTTTATATTTCAGTT  800

seq1  AATTTTGGCTTACTAATTCAAAGCAACTTCTGTTTCTAAATGTCACTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGCTTACTAATTCAAAGCAACTTCTGTTTCTAAATGTCACTGAA  850

seq1  GAAGGAAAATATTTGGAATTGAGTATACATACCTTAATATGTCATTGTTA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGG-AAATATTTGGAATTGAGTATACATACCTTAATATGTCATTGTTA  899

seq1  TAATCTCTCAGAGCTATAGTTGACATTGAATATTCTGAAAACAGTTTATT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATCTCTCAGAGCTATAGTTGACATTGGATATTCTGAAAACAGTTTATT  949

seq1  AGATAACATTGATATTACCCAAAACCAACATATATCTAACACGGCATGAA  1000
      |||||||||||||| ||||||||  | |||| ||||||   |||||||| 
seq2  AGATAACATTGATA-TACCCAAA--CCACATTTATCTACACCGGCATGAT  996

seq1  TCATAGAACTCATAGTTTTATTTGCCCATCTGTTTTCTAAATAGCAACAG  1050
      ||||||||||  |||||||| ||  ||||||||||||| |||||| ||  
seq2  TCATAGAACTTCTAGTTTTAATTTGCCATCTGTTTTCTCAATAGC-ACGA  1045

seq1  ATA-TGAAA-GAGCAT-GAATACCAGAACTAAGGTTAATTTGGACCCATG  1097
      ||| ||||| |||||| ||||||||||||  ||||| |||||||||||||
seq2  ATATTGAAAGGAGCATGGAATACCAGAACCTAGGTT-ATTTGGACCCATG  1094

seq1  ATCCGACATTCTGGT-TTAAAAGTGTAGTATATGTAAAT  1135
      ||||||||||||||| || |||||| |||||||||||||
seq2  ATCCGACATTCTGGTCTTTAAAGTGGAGTATATGTAAAT  1133