BAC Information

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BAC

Clone NameB6Ng01-168C02
Chromosome15 (Build37)
Map Location 97,487,795 - 97,649,540
singlet/doubletdoublet
Overlap geneD15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a
Upstream geneSlc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774
Downstream geneVdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168C02.bB6Ng01-168C02.g
ACCDH959451DH959452
length1,1051,144
definitionDH959451|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C02, 5' end.DH959452|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,648,441 - 97,649,540)(97,487,795 - 97,488,958)
sequence
gaattcatctcatgctactatacccagccagcttttatgtcttgttttta
tgaatataagtgtgctttattcataagataaaatatatatttaaattttt
tatttgaaaaacaaaatgtgtgaaactttggcttgcatgtatgcatgtta
ccattgtgtacagtgcctccagaggttagagagggtatccggtcccctga
aaacagttacagacagttgtgagccaccatgtgggtgctgagactcgaac
ccagatcctctggaagagcagccagtgctcttatccgtggagctgtctct
ccagctttttaagcggatattggagattcggcttggagcatgctcatacc
acaagcactttaccaactgagctatcgccctagctcctaaaaatactgta
aagccagtcacatttcactcctagaagtaaatgttcttttagcttgaggc
cagcgaggaccacatagtgagttccagggcatccagggttacattcagct
ccacgttaaaaaacctgtctgaaacaaaacaaaaacaagcaaaaaaaaac
aaaaacaaacaaaaaaaaaacagtattaactagagatagaggtatgccct
gttttctacacacctgcagtctcttcactcaggtagcagaagcaagacga
ttgagaattggaggtcagcctgagctgagaccctgccttcgtatttaaga
tttggggctgtatttcatgtttctttgcttgcttgcttgcttgcttgctt
gcttgcttgcttgcttgcttgattgattgattgattttgaaagagagggt
actttactgtgtagcccagtcaaacctcaaagggttgatccccctgcctc
ctcctttggattgcaggcaagggttgtttgaagctgcttgaaagcaggaa
acaggctggtggcctctggaggggtcagcgcctgcatttgaagtcacccc
tcacactggtttgcctaggctactgctgggttatgagctagcaccccaca
cacacctccctgtgccatggcagcactggtctgagactgatgatgcctcc
acggtcttcctggtgttcctaggttcagtcagaagagtccctcctctctc
catgg
gaattctcagaagatgaaacaaaagtggctaataaacatgaaaacttcaa
attcactaggcatcagggaaatgcaaatccaaacaaggaaaagacacaat
gaaaacttaaaaaatacatgcgcctaaggagtgatgctaactgcgaggct
gagcgcatgcgctatccctatctaacgcgagcgcatgcgctatcgctgtc
taacgcgctctgaccatgtggcgtcctcactatgaactactcttaggcac
tctaagagtgagccaaataatcttctggttataaaacgcttagtctctgc
tactgtagcagaaaatagaataagactgggagtcagagatgcagcagctg
acaccggcatgggaatcccaagagagaatcacagtagcatcaatgtggac
tcataacaaatgccaatttgtccaaactctccacagtgttgccaaaagaa
agagtatccccatggacctgggtttcagtgcttattcctgccccagcccc
atgtgagcaaggctcaccagtatcagaggcatctgggcatgagatctcca
aggggaaatcaagtcaggcatactgagtcgcgcctcgctcccccatctgt
cagatcttctcggcaccgtagggaggtctctgcccacactgcctgtggga
gtatcggcagttcttccccacagctcttccaacaaatattactacacatg
gtgtcagaggccagggtcaggctggtagccactagcctttcccagcatgc
tcgatgttacacacaaacctgacttccccattcacttctcccctggaggc
ctccctttgtcgagactcaatctattcatccaaaagaaagccccagactt
gacaatgttgttattgaggcaatggcttcgaagcctctggtgggagaggt
accaaactgctgctgggtgcggccttacagacaccaactagtgtcaatgt
ctgacatttccccacagcagacagaggaagatctcaaagccacacagatc
tggggagcaggagaagtctgagatcctcagacagggcagagccctggagt
ctcgtttcaatagatcacgccttgaatactatccaaaatagaactaagcc
agagggctccggagggattaagattattagatagcacgcgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_97648441_97649540
seq2: B6Ng01-168C02.b_44_1148 (reverse)

seq1  CCATGGAGAGAGGAGGG-CTCTTCTGACTGAACCTAGG-ACACCAGG-AG  47
      ||||||||||||||||| |||||||||||||||||||| |||||||| ||
seq2  CCATGGAGAGAGGAGGGACTCTTCTGACTGAACCTAGGAACACCAGGAAG  50

seq1  ACCGTGGA-GCATCAACAGTCTCAGACCAGTGCTGCCATGGCACAGGGAG  96
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  ACCGTGGAGGCATCATCAGTCTCAGACCAGTGCTGCCATGGCACAGGGAG  100

seq1  GTGTGTGTGGGGTGCTAGCTCATAA-CCAGCAGTAGCCTAGGCAAACCAG  145
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGTGTGTGGGGTGCTAGCTCATAACCCAGCAGTAGCCTAGGCAAACCAG  150

seq1  TGTGAGGGGTGACTTCAAATGCAGGCGCTGACCCCCTCCAGAGGCCACCA  195
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTGAGGGGTGACTTCAAATGCAGGCGCTGA-CCCCTCCAGAGGCCACCA  199

seq1  GCCTGTTTCCTGCTTTCAAGCAGCTTCAAACAACCCTTGCCTGCAATCC-  244
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTGTTTCCTGCTTTCAAGCAGCTTCAAACAACCCTTGCCTGCAATCCA  249

seq1  AAGGAGGAGGCAGGGGGATCAACCCTTTGAGGTTTGACTGGGCTACACAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAGGCAGGGGGATCAACCCTTTGAGGTTTGACTGGGCTACACAG  299

seq1  TAAAGTACCCTCTCTTTCAAAATCAATCAATCAATCAAGCAAGCAAGCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACCCTCTCTTTCAAAATCAATCAATCAATCAAGCAAGCAAGCAA  349

seq1  GCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAAGAAACATGAAATACAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAAGAAACATGAAATACAGC  399

seq1  CCCAAATCTTAAATACGAAGGCAGGGTCTCAGCTCAGGCTGACCTCCAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCTTAAATACGAAGGCAGGGTCTCAGCTCAGGCTGACCTCCAAT  449

seq1  TCTCAATCGTCTTGCTTCTGCTACCTGAGTGAAGAGACTGCAGGTGTGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCGTCTTGCTTCTGCTACCTGAGTGAAGAGACTGCAGGTGTGTA  499

seq1  GAAAACAGGGCATACCTCTATCTCTAGTTAATACTGTTTTTTTTTTGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGGCATACCTCTATCTCTAGTTAATACTGTTTTTTTTTTGTTT  549

seq1  GTTTTTGTTTTTTTTTGCTTGTTTTTGTTTTGTTTCAGACAGGTTTTTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTTTTGCTTGTTTTTGTTTTGTTTCAGACAGGTTTTTTA  599

seq1  ACGTGGAGCTGAATGTAACCCTGGATGCCCTGGAACTCACTATGTGGTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAGCTGAATGTAACCCTGGATGCCCTGGAACTCACTATGTGGTCC  649

seq1  TCGCTGGCCTCAAGCTAAAAGAACATTTACTTCTAGGAGTGAAATGTGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGGCCTCAAGCTAAAAGAACATTTACTTCTAGGAGTGAAATGTGAC  699

seq1  TGGCTTTACAGTATTTTTAGGAGCTAGGGCGATAGCTCAGTTGGTAAAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACAGTATTTTTAGGAGCTAGGGCGATAGCTCAGTTGGTAAAGT  749

seq1  GCTTGTGGTATGAGCATGCTCCAAGCCGAATCTCCAATATCCGCTTAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGGTATGAGCATGCTCCAAGCCGAATCTCCAATATCCGCTTAAAA  799

seq1  AGCTGGAGAGACAGCTCCACGGATAAGAGCACTGGCTGCTCTTCCAGAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGACAGCTCCACGGATAAGAGCACTGGCTGCTCTTCCAGAGG  849

seq1  ATCTGGGTTCGAGTCTCAGCACCCACATGGTGGCTCACAACTGTCTGTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTCGAGTCTCAGCACCCACATGGTGGCTCACAACTGTCTGTAA  899

seq1  CTGTTTTCAGGGGACCGGATACCCTCTCTAACCTCTGGAGGCACTGTACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCAGGGGACCGGATACCCTCTCTAACCTCTGGAGGCACTGTACA  949

seq1  CAATGGTAACATGCATACATGCAAGCCAAAGTTTCACACATTTTGTTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTAACATGCATACATGCAAGCCAAAGTTTCACACATTTTGTTTTT  999

seq1  CAAATAAAAAATTTAAATATATATTTTATCTTATGAATAAAGCACACTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAAATTTAAATATATATTTTATCTTATGAATAAAGCACACTTA  1049

seq1  TATTCATAAAAACAAGACATAAAAGCTGGCTGGGTATAGTAGCATGAGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAAAAACAAGACATAAAAGCTGGCTGGGTATAGTAGCATGAGAT  1099

seq1  GAATTC  1100
      ||||||
seq2  GAATTC  1105

seq1: chr15_97487795_97488958
seq2: B6Ng01-168C02.g_66_1209

seq1  GAATTCTCAGAAGATGAAACAAAAGTGGCTAATAAACATGAAAACTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAGATGAAACAAAAGTGGCTAATAAACATGAAAACTTCAA  50

seq1  ATTCACTAGGCATCAGGGAAATGCAAATCCAAACAAGGAAAAGACACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAGGCATCAGGGAAATGCAAATCCAAACAAGGAAAAGACACAAT  100

seq1  GAAAACTTAAAAAATACATGCGCCTAAGGAGTGATGCTAACTGCGAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTAAAAAATACATGCGCCTAAGGAGTGATGCTAACTGCGAGGCT  150

seq1  GAGCGCATGCGCTATCCCTATCTAACGCGAGCGCATGCGCTATCGCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCATGCGCTATCCCTATCTAACGCGAGCGCATGCGCTATCGCTGTC  200

seq1  TAACGCGCTCTGACCATGTGGCGTCCTCACTATGAACTACTCTTAGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCGCTCTGACCATGTGGCGTCCTCACTATGAACTACTCTTAGGCAC  250

seq1  TCTAAGAGTGAGCCAAATAATCTTCTGGTTATAAAACGCTTAGTCTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGTGAGCCAAATAATCTTCTGGTTATAAAACGCTTAGTCTCTGC  300

seq1  TACTGTAGCAGAAAATAGAATAAGACTGGGAGTCAGAGATGCAGCAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGCAGAAAATAGAATAAGACTGGGAGTCAGAGATGCAGCAGCTG  350

seq1  ACACCGGCATGGGAATCCCAAGAGAGAATCACAGTAGCATCAATGTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGGCATGGGAATCCCAAGAGAGAATCACAGTAGCATCAATGTGGAC  400

seq1  TCATAACAAATGCCAATTTGTCCAAACTCTCCACAGTGTTGCCAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAAATGCCAATTTGTCCAAACTCTCCACAGTGTTGCCAAAAGAA  450

seq1  AGAGTATCCCCATGGACCTGGGTTTCAGTGCTTATTCCTGCCCCAGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATCCCCATGGACCTGGGTTTCAGTGCTTATTCCTGCCCCAGCCCC  500

seq1  ATGTGAGCAAGGCTCACCAGTATCAGAGGCATCTGGGCATGAGATCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCAAGGCTCACCAGTATCAGAGGCATCTGGGCATGAGATCTCCA  550

seq1  AGGGGAAATCAAGTCAGGCATACTGAGTCGCGCCTCGCTCCCCCATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAATCAAGTCAGGCATACTGAGTCGCGCCTCGCTCCCCCATCTGT  600

seq1  CAGATCTTCTCGGCACCGTAGGGAGGTCTCTGCCCACACTGCCTGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTCTCGGCACCGTAGGGAGGTCTCTGCCCACACTGCCTGTGGGA  650

seq1  GTATCGGCAGTTCTTCCCCACAGCTCTTCCAACAAATATTACTACACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGGCAGTTCTTCCCCACAGCTCTTCCAACAAATATTACTACACATG  700

seq1  GTGTCAGAGGCCAGGGTCAGGCTGGTAGCCACTAGCCTTTCCCAGCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGAGGCCAGGGTCAGGCTGGTAGCCACTAGCCTTTCCCAGCATGC  750

seq1  TCGATGTTACACACAAACCTGACTTCCCCATTCACTTCTCCCCTGGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGTTACACACAAACCTGACTTCCCCATTCACTTCTCCCCTGGAGGC  800

seq1  CTCCCTTTGTCGAGACTCAATCTATTCATCCAAAAGAAAGCCCCAGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTGTCGAGACTCAATCTATTCATCCAAAAGAAAGCCCCAGACTT  850

seq1  GACAATGTTGTTATTGAGGCAATGGCTTCGAAGCCTCTGGTGGGAGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTGTTATTGAGGCAATGGCTTCGAAGCCTCTGGTGGGAGAGGT  900

seq1  ACCAAACTGCTGCTGGGTGCGGCCTTACAGACACCAACTAGTGTCAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTGCTGCTGGGTGCGGCCTTACAGACACCAACTAGTGTCAATGT  950

seq1  CTGAACAATTTCCCCACAGCAGGACAGAGGAAGGATCCTCAAAGCCACAC  1000
      ||||   |||||||||||||| |||||||||| ||| |||||||||||||
seq2  CTGA--CATTTCCCCACAGCA-GACAGAGGAA-GAT-CTCAAAGCCACAC  995

seq1  AGATCTGGGGAGCAGGGAGAGCCTGAGAACCCCAGACAGGGGCAGGAGCC  1050
      ||||||||||||||||   || |||||| || |||||| ||||| |||||
seq2  AGATCTGGGGAGCAGGAGAAGTCTGAGATCCTCAGACA-GGGCA-GAGCC  1043

seq1  CTGGAGCCTCGTTTTCAATAGATTCACGCCTTGAATACTATTCCAAAAAT  1100
      |||||| |||| |||||||||| ||||||||||||||||||  | |||||
seq2  CTGGAGTCTCG-TTTCAATAGA-TCACGCCTTGAATACTAT--CCAAAAT  1089

seq1  AGGACCTAAAAGCCAGAGGGCTCCCGAGTGAAGTAGAGATTTAATTTAGA  1150
      || ||    ||||||||||||||| ||| ||  |  |||||    |||||
seq2  AGAAC---TAAGCCAGAGGGCTCCGGAGGGA--TTAAGATT---ATTAGA  1131

seq1  TAGCACAGCGGGAA  1164
      |||||| |||||||
seq2  TAGCAC-GCGGGAA  1144