BAC Information

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BAC

Clone NameB6Ng01-168M13
Chromosome15 (Build37)
Map Location 76,270,697 - 76,324,426
singlet/doubletdoublet
Overlap geneBop1, Scx, Hsf1
Upstream geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5
Downstream geneDgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M13.bB6Ng01-168M13.g
ACCDH959933DH959934
length1,0661,085
definitionDH959933|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M13, 5' end.DH959934|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,270,697 - 76,271,826)(76,323,338 - 76,324,426)
sequence
gaattcagatgacaccataggggaattcatcctgtgacactggggacatc
caattccagtcctcaggcttgacagaacgtcatctcaccagcccacatcc
tgtttttggttttgttcaaaattacgtatgtgcatatgtatgtgtatatg
catgtgtgtgtccacaagaatgcaggtgcctgcagaggccacagacatta
gagctggagctgcctggtgtgggtgctgggaaccaaactcaggacctctg
taagagcagtgggacacactcttaaccacggagctgtttttccagcccca
tcattgtgattttgatatgcatttctctggcagttaatgaaactaatcat
ctttgcatatgtatattggccttttgtatattgcctttggaaaatatctg
ttcaagcccgtttgttattgttgttgacaccataggggaattcatcctgt
gaattttcgactttattattaatgttccatcattctggggatagaattca
ggtcaccaggcaagtgcctttagccactgagccaccttgctggccctcag
agattgctagtaggtttgttacctttgtacatcttgaatagtaatccctt
atcagatatgtgcttcatcctgtagtaactatgtggttttgtcccttggt
acgccaacgttttgaggttgaggttggtgtcaccttcttcttttattgcc
catgcttttggtgtcatatcccagaaatcactgttggaccctttgcagag
ctttatggttttaggtctccttttattttttatgtttttttttttacaat
agaaccaggtgttctggcatgtctgagcccagtcaaaatttagacttcag
tctgtacctggcatctcaatatcttataacttggcatatctgatttcttg
gccctttagagttatgagaacctttctggccgaagaggctccagcaggag
cttcttacaaacaggctgtgctgttggacttctggttcacactgatcact
gagtctacgggaggcatgcgctgactgattaccaacggattagcatgatt
ggttacaagcacctgt
gaattcaaaggctatgtacacattagagctgtgagcatgctcaggaagac
ctatgaaggccataagcttgctctccctctggcatgaaggagaagcagga
tagaaagttgggttgtcacttgcaggctaaatgttaaagataggagtcag
catatacagagaggccccaggaaagactggctccagtttttaaaggaaat
ttccgctcgactttattaagtcagaaggacaaagtgcaatggccaccaag
aacacaattaggacataattagtctagggaagtcacaagaaccaacaatg
acacaatgacaaaagtgagagatgaggggacaatgcgctttcccactgag
tcaaaaacaacaaggcatttaagcaaagcttcggctgggactggtgtgat
ggctcagcaggcaaccactgccaagcccgacagcctgggttcaatccctg
gtacccacacaggagaaggagggacccgacttcacaagttgtcctctaac
ttctatacacatgtatgtgcacacttaaactgatatggatatgactttgc
tgcctgcaagggccttccctggtcttgagtttacagttggattatgaatt
aaccattatgaatcccatttattttagataaatttaattaaaaagaaaag
ctacagcttataataggaaagaaaagagcaaccaataaactccgtatgtt
ggactcatgagaatacagattctaacttttagtatggccaaagatctgaa
gaactgtacttgaaggacgaggtataaggatgatgtcctactaatggaga
gtctcagtaaagcaataagaagcgaaaaggaaacaccaagttgatattct
ggatttgtaaagcacaaatcagtaaaaattcacctggggactcaagaggg
taaaacagaagagccgactgaggttatagactgagatagccattggagta
ggcttcaagtttaaaagcctattcagaccagacactcagtctgtctgtct
gtttctgcacaggacacagctttcatactctagtacatgcatgcacatgc
tctgctgatgatgacgactaactctctaaactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76270697_76271826
seq2: B6Ng01-168M13.b_42_1107

seq1  GAATTCAGATGACACCATAGGGGAATTCATCCTGTGACACTGGGGACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGACACCATAGGGGAATTCATCCTGTGACACTGGGGACATC  50

seq1  CAATTCCAGTCCTCAGGCTTGACAGAACGTCATCTCACCAGCCCACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAGTCCTCAGGCTTGACAGAACGTCATCTCACCAGCCCACATCC  100

seq1  TGTTTTTGGTTTTGTTCAAAATTACGTATGTGCATATGTATGTGTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGGTTTTGTTCAAAATTACGTATGTGCATATGTATGTGTATATG  150

seq1  CATGTGTGTGTCCACAAGAATGCAGGTGCCTGCAGAGGCCACAGACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTCCACAAGAATGCAGGTGCCTGCAGAGGCCACAGACATTA  200

seq1  GAGCTGGAGCTGCCTGGTGTGGGTGCTGGGAACCAAACTCAGGACCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGCTGCCTGGTGTGGGTGCTGGGAACCAAACTCAGGACCTCTG  250

seq1  TAAGAGCAGTGGGACACACTCTTAACCACGGAGCTGTTTTTCCAGCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAGTGGGACACACTCTTAACCACGGAGCTGTTTTTCCAGCCCCA  300

seq1  TCATTGTGATTTTGATATGCATTTCTCTGGCAGTTAATGAAACTAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGATTTTGATATGCATTTCTCTGGCAGTTAATGAAACTAATCAT  350

seq1  CTTTGCATATGTATATTGGCCTTTTGTATATTGCCTTTGGAAAATATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATATGTATATTGGCCTTTTGTATATTGCCTTTGGAAAATATCTG  400

seq1  TTCAAGCCCGTTTGTTATTGTTGTTGACACCATAGGGGAATTCATCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCCGTTTGTTATTGTTGTTGACACCATAGGGGAATTCATCCTGT  450

seq1  GAATTTTCGACTTTATTATTAATGTTCCATCATTCTGGGGATAGAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCGACTTTATTATTAATGTTCCATCATTCTGGGGATAGAATTCA  500

seq1  GGTCACCAGGCAAGTGCCTTTAGCCACTGAGCCACCTTGCTGGCCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCAGGCAAGTGCCTTTAGCCACTGAGCCACCTTGCTGGCCCTCAG  550

seq1  AGATTGCTAGTAGGTTTGTTACCTTTGTACATCTTGAATAGTAATCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCTAGTAGGTTTGTTACCTTTGTACATCTTGAATAGTAATCCCTT  600

seq1  ATCAGATATGTGCTTCATCCTGTAGTAACTATGTGGTTTTGTCCCTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATGTGCTTCATCCTGTAGTAACTATGTGGTTTTGTCCCTTGGT  650

seq1  ACGCCAACGTTTTGAGGTTGAGGTTGGTGTCACCTTCTTCTTTTATTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAACGTTTTGAGGTTGAGGTTGGTGTCACCTTCTTCTTTTATTGCC  700

seq1  CATGCTTTTGGTGTCATATCCCAGAAATCACTGTTGGACCCTTTGCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTTGGTGTCATATCCCAGAAATCACTGTTGGACCCTTTGCAGAG  750

seq1  CTTTATGGTTTTAGGTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA  800
      ||||||||||||||||||||  |||| |||||| | |||||||||||  |
seq2  CTTTATGGTTTTAGGTCTCC--TTTTATTTTTTATGTTTTTTTTTTTACA  798

seq1  ATAGAGCCAGGTGTCCTGGCATGGCTGAGCCCAGTCAAGAGTTTAGACTT  850
      ||||| |||||||| |||||||| |||||||||||||| | |||||||||
seq2  ATAGAACCAGGTGTTCTGGCATGTCTGAGCCCAGTCAA-AATTTAGACTT  847

seq1  CAGTCTGTACCTGGCATCTCAATTATCTTATAACTTGGCATATCTGATTT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGTCTGTACCTGGCATCTCAA-TATCTTATAACTTGGCATATCTGATTT  896

seq1  CTTGGCCCTTTAGGGTTATGAGAAACCTTTCTGGCCCAAGAGGCTCCAGC  950
      ||||||||||||| |||||||| ||||||||||||| |||||||||||||
seq2  CTTGGCCCTTTAGAGTTATGAG-AACCTTTCTGGCCGAAGAGGCTCCAGC  945

seq1  AGGAGCTTCTTACAGACAGGCTGGTGCTGTTGGACTTCTGGTTCAACACT  1000
      |||||||||||||| ||||||| ||||||||||||||||||||| |||||
seq2  AGGAGCTTCTTACAAACAGGCT-GTGCTGTTGGACTTCTGGTTC-ACACT  993

seq1  GAGTCACTGAGGTTCTAGGGGAGGCATGCAGCTGGACTGAGTTACCACCG  1050
      || ||||||||  |||| ||||||||||| ||| |||||| |||||| ||
seq2  GA-TCACTGAG--TCTACGGGAGGCATGC-GCT-GACTGA-TTACCAACG  1037

seq1  GATATAGCATGATTGTGTACAAAGCACGCTGCCAGTGAGGCAAGGTGGGA  1100
      ||| |||||||||||  ||| |||||| |||                   
seq2  GAT-TAGCATGATTGGTTAC-AAGCAC-CTGT------------------  1066

seq1  GGGTGGTTAGAGCAGACCTTTAGCACCTGT  1130
                                    
seq2  ------------------------------  1066

seq1: chr15_76323338_76324426
seq2: B6Ng01-168M13.g_87_1154 (reverse)

seq1  TACAGTTTTAGAGAGTTAGTCTGTCATCATCAAGGCAGGGAGCATGGTGG  50
      ||||| ||||||||||||||| ||||||||||  |||  |||||||   |
seq2  TACAG-TTTAGAGAGTTAGTC-GTCATCATCA--GCA--GAGCATG--TG  42

seq1  CATGCATGGTACTAGAGTAATTGAAAGCTGTGTCCTGGTGCAGAAACAGA  100
      ||||||| |||||||||||  ||||||||||||||| |||||||||||||
seq2  CATGCAT-GTACTAGAGTA--TGAAAGCTGTGTCCT-GTGCAGAAACAGA  88

seq1  CAGACAGACTGAGTGTCTGGGTCTGGAATAGGCTTTTTAAACTTGAAAGC  150
      |||||||||||||||||| ||||| |||||||| ||||||||||| ||||
seq2  CAGACAGACTGAGTGTCT-GGTCT-GAATAGGC-TTTTAAACTTG-AAGC  134

seq1  CTACTCCCAATGGCTATCTTCAGTCTATAACCTCAGTCGGCTCTTCTGTT  200
      ||||| |||||||||||| ||||||||||||||||||||||||||||| |
seq2  CTACT-CCAATGGCTATC-TCAGTCTATAACCTCAGTCGGCTCTTCTG-T  181

seq1  TTTACCCTCTTGAGTCCCCAGGTGAATTTTTTACCTGATTTGTGCTTTAC  250
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TTTACCCTCTTGAGTCCCCAGGTGAATTTTT--ACTGATTTGTGCTTTAC  229

seq1  AAATCCAGAATATCAACTTGGTGTTTCCTTTTCGCTTCTTATTGCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGAATATCAACTTGGTGTTTCCTTTTCGCTTCTTATTGCTTTAC  279

seq1  TGAGACTCTCCATTAGTAGGACATCATCCTTATACCTCGTCCTTCAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCTCCATTAGTAGGACATCATCCTTATACCTCGTCCTTCAAGTA  329

seq1  CAGTTCTTCAGATCTTTGGCCATACTAAAAGTTAGAATCTGTATTCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTCAGATCTTTGGCCATACTAAAAGTTAGAATCTGTATTCTCAT  379

seq1  GAGTCCAACATACGGAGTTTATTGGTTGCTCTTTTCTTTCCTATTATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAACATACGGAGTTTATTGGTTGCTCTTTTCTTTCCTATTATAAG  429

seq1  CTGTAGCTTTTCTTTTTAATTAAATTTATCTAAAATAAATGGGATTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTTTTCTTTTTAATTAAATTTATCTAAAATAAATGGGATTCATA  479

seq1  ATGGTTAATTCATAATCCAACTGTAAACTCAAGACCAGGGAAGGCCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATTCATAATCCAACTGTAAACTCAAGACCAGGGAAGGCCCTTG  529

seq1  CAGGCAGCAAAGTCATATCCATATCAGTTTAAGTGTGCACATACATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCAAAGTCATATCCATATCAGTTTAAGTGTGCACATACATGTGT  579

seq1  ATAGAAGTTAGAGGACAACTTGTGAAGTCGGGTCCCTCCTTCTCCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTTAGAGGACAACTTGTGAAGTCGGGTCCCTCCTTCTCCTGTGT  629

seq1  GGGTACCAGGGATTGAACCCAGGCTGTCGGGCTTGGCAGTGGTTGCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCAGGGATTGAACCCAGGCTGTCGGGCTTGGCAGTGGTTGCCTGC  679

seq1  TGAGCCATCACACCAGTCCCAGCCGAAGCTTTGCTTAAATGCCTTGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCACACCAGTCCCAGCCGAAGCTTTGCTTAAATGCCTTGTTGT  729

seq1  TTTTGACTCAGTGGGAAAGCGCATTGTCCCCTCATCTCTCACTTTTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTCAGTGGGAAAGCGCATTGTCCCCTCATCTCTCACTTTTGTCA  779

seq1  TTGTGTCATTGTTGGTTCTTGTGACTTCCCTAGACTAATTATGTCCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCATTGTTGGTTCTTGTGACTTCCCTAGACTAATTATGTCCTAAT  829

seq1  TGTGTTCTTGGTGGCCATTGCACTTTGTCCTTCTGACTTAATAAAGTCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTGGTGGCCATTGCACTTTGTCCTTCTGACTTAATAAAGTCGA  879

seq1  GCGGAAATTTCCTTTAAAAACTGGAGCCAGTCTTTCCTGGGGCCTCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAATTTCCTTTAAAAACTGGAGCCAGTCTTTCCTGGGGCCTCTCTG  929

seq1  TATATGCTGACTCCTATCTTTAACATTTAGCCTGCAAGTGACAACCCAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTGACTCCTATCTTTAACATTTAGCCTGCAAGTGACAACCCAAC  979

seq1  TTTCTATCCTGCTTCTCCTTCATGCCAGAGGGAGAGCAAGCTTATGGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCCTGCTTCTCCTTCATGCCAGAGGGAGAGCAAGCTTATGGCCT  1029

seq1  TCATAGGTCTTCCTGAGCATGCTCACAGCTCTAATGTGT  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGTCTTCCTGAGCATGCTCACAGCTCTAATGTGT  1068