BAC Information

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BAC

Clone NameB6Ng01-173C16
Chromosome15 (Build37)11 (Build37)
Map Location 14,694,125 - 14,694,55258,536,641 - 58,537,674
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666708, LOC674819
Downstream geneLOC100040024, LOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C16.bB6Ng01-173C16.g
ACCGA001587GA001588
length8351,046
definitionB6Ng01-173C16.b B6Ng01-173C16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,694,125 - 14,694,552)(58,536,641 - 58,537,674)
sequence
gaattctttgtttagctctgtaccccatttttatagggttatttgatttt
ctggagtccatcttcttgagttctttatatatatatatatatatacattg
gatattagtctcctattttatttaggattggttaagatcctttgttagga
gcaggtgtggcggcagtcctaaaggtgccagggactgcagctaagtcata
tgatttgcacctgacttcctcatctaagccacaaacatcttgagagctgc
gcaggtgtaccaggattcaggtgaatccaatttggtggagatttgcccct
gctgccctgattagctgaagctgcgtacctggcgagggggcgtggcctgc
tgtgcgtggatgagagagagtataaaaggagtgagaggcccgggttagag
ggaggattattattcgagagaggattgttattattgggagatataaacaa
gggagagatataaacgggggagatataaacaaggaagatatataaacaag
ggaaatatagagaaagaagaaacaggactgaataaacgtgtgcagaagga
tcctgctgtggcgtcgttcttgctggcgagttgggggcgcgctcgagagt
tggtgccgaaacccgggacgggacaagaaacatcttcaggcacgagcgaa
gaccccctgctacagggaggattcagaactgcatcacagggaacagtggt
aatgaagtgttccccgtaaaacagactgttgagaaggacccggcttggat
ttcagaactcttcagctggggaacggtactggtagtctcccgattgatcc
ccggggttaaagggggatatttttaagataaagaa

gaattctaataaaatgttatctttcttgtatgtggtgtgtttatttaatt
gtggacaagagaccatgttttcccagaaggattctgaaagattgcctatg
aggtccaatcttccacaggcagccagagtgtttaagactttaaaagtctt
ccatagatgccataatgatatttcttttccacctaagtcttcaatgttaa
gtgagatttattttttgaggccaaaacccaactaccttataaattcacag
taagcttacagtttccaaaatgtgttgggaatctgaggttttagaagcca
aggtttatttttcttgatacacagattaaatagcttgatttcctggatat
tagcactgtatttaaaagttattcatggaggcatagttgtgactttctac
ctgttatctctaggagtcttatctttctctatatttttggacaggttcat
tttccgttcttagtatttcacttttgaggagaaatcctaggaaagtgaaa
tgtgtatctttaaaacacagtagctcacgatgcagttaaaattatgttag
agttaaatttatagaaagacaggcagtgcacgcatagagtcatctggagg
aaaagatcaccatgatcctcctattaaaaagctcagcttgatggaagatg
gaattctggcttggtcatagcacacccgttagctgacaagggaggcttgc
agtcaaggaattactgaaataaagctgaattctctgatgaatttgctatt
gatcttgatgagggagaccctagagcagtgatgctcttgctggttgaagg
tatgtatagggattattgggtaaagttcattgttgtacctataactcata
ctcttgaattgagtcaactcctggctagatgcacgtttccagctatttgc
ttttaaaatattcttgcagatcatcatgtatggaccgctgtgcattgggt
atttcaagcacgtatgtatataccgttacctttctcacatggggcaaggg
actgggaccttctccacagtttcaggggacaagaatggccataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_14694125_14694552
seq2: B6Ng01-173C16.b_346_877

seq1  GCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGCCTGTTGT  50
      ||||||||||||||||||||||| ||||| |||| ||||||||||| |||
seq2  GCCCTGATTAGCTGAAGCTGCGTACCTGGCGAGGGGGCGTGGCCTGCTGT  50

seq1  GCCTGGATGGGAACTGAGAGTATAAAA-GAGTGAGAGGCCCAGG------  93
      || |||||| ||   |||||||||||| ||||||||||||| ||      
seq2  GCGTGGATGAGA---GAGAGTATAAAAGGAGTGAGAGGCCCGGGTTAGAG  97

seq1  --------------------------GTT---------------------  96
                                |||                     
seq2  GGAGGATTATTATTCGAGAGAGGATTGTTATTATTGGGAGATATAAACAA  147

seq1  --------------CGGGGGAGATATAAAC--------------------  112
                    ||||||||||||||||                    
seq2  GGGAGAGATATAAACGGGGGAGATATAAACAAGGAAGATATATAAACAAG  197

seq1  -------------AAGAAGAAACAGGACTGAATAAACGTGTGTGCAGAAG  149
                   ||||||||||||||||||||||||  |||||||||||
seq2  GGAAATATAGAGAAAGAAGAAACAGGACTGAATAAAC--GTGTGCAGAAG  245

seq1  GATCCTGTTGCAGCGTCGTTCTTCCTGGCCAGTTGGGTGCGCG--CAACA  197
      ||||||| ||  ||||||||||| ||||| ||||||| |||||  | | |
seq2  GATCCTGCTGTGGCGTCGTTCTTGCTGGCGAGTTGGGGGCGCGCTCGAGA  295

seq1  AGTGGTGCCGAAA-----GCCGGGACAAGAAACATCTTCAGGCACGAGAG  242
        |||||||||||     | |||||||||||||||||||||||||||| |
seq2  GTTGGTGCCGAAACCCGGGACGGGACAAGAAACATCTTCAGGCACGAGCG  345

seq1  AAGACCCCCTGCTACAGGGAGGATTCAGAACTGCATCACAGGGAAGGAGC  292
      |||||||||||||||||||||||||||||||||||||||||||||  || 
seq2  AAGACCCCCTGCTACAGGGAGGATTCAGAACTGCATCACAGGGAA-CAGT  394

seq1  AGTTATAAAG-GTT-CCAGTAAAACAGACTGTTGAGAAGGATCCAGCGTG  340
       || || ||| ||| || ||||||||||||||||||||||| || || ||
seq2  GGTAATGAAGTGTTCCCCGTAAAACAGACTGTTGAGAAGGACCCGGCTTG  444

seq1  GA-TTCAGAACTCTTCAGCTGGGGGACGGTACTGGTAAGTCTCCCAAATT  389
      || ||||||||||||||||||||| ||||||||||| ||||||||  |||
seq2  GATTTCAGAACTCTTCAGCTGGGGAACGGTACTGGT-AGTCTCCC-GATT  492

seq1  GATGCCC-GGGTTAAAGGGGGATATTTTTAAGAAAAAGAA  428
      ||| ||| ||||||||||||||||||||||||| ||||||
seq2  GATCCCCGGGGTTAAAGGGGGATATTTTTAAGATAAAGAA  532


seq1: chr11_58536641_58537674
seq2: B6Ng01-173C16.g_69_1114 (reverse)

seq1  TTTTATGG-CAATCTTGTCCCCTGGAACTGT-GAG-AGGT-CCAGTCCCT  46
      |||||||| || |||||||||||| |||||| ||| |||| |||||||||
seq2  TTTTATGGCCATTCTTGTCCCCTGAAACTGTGGAGAAGGTCCCAGTCCCT  50

seq1  TGCCCCTTGTGAGAAGGGTTACG---TATACATACGTGCTTGAGATTACC  93
      |||||| |||||||| ||| |||   ||||||||||||||||| ||  ||
seq2  TGCCCCATGTGAGAAAGGTAACGGTATATACATACGTGCTTGAAATACCC  100

seq1  AATGCACAGCGGT-CATACATGATGATCTTGCAGATATTTTTAAAAGC-A  141
      ||||||||||||| |||||||||||||||   |||   |||||||||| |
seq2  AATGCACAGCGGTCCATACATGATGATCTGCAAGAATATTTTAAAAGCAA  150

seq1  ATAGCTGG-AACGTGCATCTAGCCAGGAGTTGACTCAATTCAAGAGTATG  190
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGGAAACGTGCATCTAGCCAGGAGTTGACTCAATTCAAGAGTATG  200

seq1  AGTTATAGGTACAACAATGAACTTTACCCAATAATCCCTATACATACCTT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGGTACAACAATGAACTTTACCCAATAATCCCTATACATACCTT  250

seq1  C-ACCAGCAAGAGCATCACTGCTCTAGGGTCT-CCTCATCAAGATCAATA  288
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAACCAGCAAGAGCATCACTGCTCTAGGGTCTCCCTCATCAAGATCAATA  300

seq1  GCAAATTCATCAGAGAATTCAGCTTTATTTCAGTAATTCCTTGACTGCAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCATCAGAGAATTCAGCTTTATTTCAGTAATTCCTTGACTGCAA  350

seq1  GCCTCCCTTGTCAGCTAACGGGTGTGCTATGACCAAGCCAGAATTCCATC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTTGTCAGCTAACGGGTGTGCTATGACCAAGCCAGAATTCCATC  400

seq1  TTCCATCAAGCTGAGCTTTTTAATAGGAGGATCATGGTGATCTTTTCCTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAAGCTGAGCTTTTTAATAGGAGGATCATGGTGATCTTTTCCTC  450

seq1  CAGATGACTCTATGCGTGCACTGCCTGTCTTTCTATAAATTTAACTCTAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACTCTATGCGTGCACTGCCTGTCTTTCTATAAATTTAACTCTAA  500

seq1  CATAATTTTAACTGCATCGTGAGCTACTGTGTTTTAAAGATACACATTTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTAACTGCATCGTGAGCTACTGTGTTTTAAAGATACACATTTC  550

seq1  ACTTTCCTAGGATTTCTCCTCAAAAGTGAAATACTAAGAACGGAAAATGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTAGGATTTCTCCTCAAAAGTGAAATACTAAGAACGGAAAATGA  600

seq1  ACCTGTCCAAAAATATAGAGAAAGATAAGACTCCTAGAGATAACAGGTAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCAAAAATATAGAGAAAGATAAGACTCCTAGAGATAACAGGTAG  650

seq1  AAAGTCACAACTATGCCTCCATGAATAACTTTTAAATACAGTGCTAATAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACAACTATGCCTCCATGAATAACTTTTAAATACAGTGCTAATAT  700

seq1  CCAGGAAATCAAGCTATTTAATCTGTGTATCAAGAAAAATAAACCTTGGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATCAAGCTATTTAATCTGTGTATCAAGAAAAATAAACCTTGGC  750

seq1  TTCTAAAACCTCAGATTCCCAACACATTTTGGAAACTGTAAGCTTACTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACCTCAGATTCCCAACACATTTTGGAAACTGTAAGCTTACTGT  800

seq1  GAATTTATAAGGTAGTTGGGTTTTGGCCTCAAAAAATAAATCTCACTTAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATAAGGTAGTTGGGTTTTGGCCTCAAAAAATAAATCTCACTTAA  850

seq1  CATTGAAGACTTAGGTGGAAAAGAAATATCATTATGGCATCTATGGAAGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGACTTAGGTGGAAAAGAAATATCATTATGGCATCTATGGAAGA  900

seq1  CTTTTAAAGTCTTAAACACTCTGGCTGCCTGTGGAAGATTGGACCTCATA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGTCTTAAACACTCTGGCTGCCTGTGGAAGATTGGACCTCATA  950

seq1  GGCAATCTTTCAGAATCCTTCTGGGAAAACATGGTCTCTTGTCCACAATT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTTTCAGAATCCTTCTGGGAAAACATGGTCTCTTGTCCACAATT  1000

seq1  AAATAAACACACCACATACAAGAAAGATAACATTTTATTAGAATTC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACACACCACATACAAGAAAGATAACATTTTATTAGAATTC  1046


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