BAC Information

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BAC

Clone NameB6Ng01-173K17
Chromosome15 (Build37)
Map Location 50,971,394 - 51,176,394
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K17.bB6Ng01-173K17.g
ACCGA001955GA001956
length1,0671,028
definitionB6Ng01-173K17.b B6Ng01-173K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,971,394 - 50,972,443)(51,175,378 - 51,176,394)
sequence
gaattctgtaattaaagtaaactataactatgatgcccgcagggaatttt
ttcttttgatattatgagtaaactaatgtcaaagaaagtaactgaaaaaa
aaaataactgagctctcttaaagctgaagagtaaggaattcttcgagacg
ggtgaagaatgccttgaaaagaaaagatgagatgccttatcaagttacac
ctgtcatcctcatcaatggtgagcattcgatttcatctaaaaggagatgg
gggtgcggatgggggatgggacacgtaggacgcactatgtatgactggag
gattggggaactggagaatttcagaagaaaaacacatcttagattccatt
ccagttttagaactattttccttgggagatagctatttggtatttttgct
aatagtttctggatctcagaaacgcattatagagaaaaaaagcaaatatg
caccatttaaatcttgatattgtttacaaatttttggtaataattggtga
aaaaaatccatttacctgtcaaaattttcatttgtatgaattgtgagagc
aatgaagtgcacatttagcttgttattttgttttggaacacattctctgc
gcttattatttccatttacacagtataagaccattttattcttgtttcca
tgttcaatctttatctttaaataaatgtaaattaggatatgtcttcttct
cttatatgccaatcaaacaggtaggggcaagtgttctgggtaaagtctta
gctaagtagggtatatgacacagtctggtaaaagtgtgggacttggacaa
tttgagtgctgtttctgagttactcttttgttttagagcctcagatacag
aaagaaagaaaatagttctagtaatacataaacaatacataattcttcaa
ttatttgcataagcaaaactagacaggtcccttttttttttctggagtta
gccgaattcgactaatacatggcttggcctaaagtggcctgtaacccttt
cctaatgttaggtagaaccatctaaccctatgccatgcagataacatgga
tgaaatcacgttatttt
gaattcaagtggtcttatggtgcactgagttgtttgtgggtgttctctta
ctcatcagtctgactgcgactcttcttctggcgattatttcattagagag
aaagtatgagttagatattagcagccctggtctcctcaaagcctgaccgt
tgcctcagaacgtatatagctttgagctggtttcttagactttgagctat
gagaaaaagaatattgcttaatttctacttaaggaaaatgccatgggcaa
cctaagaacaccaaaggatgtggagttgggttgggatggcagttgggtga
acaccaatactttcacctccttcattttctggctaagtggagcggcatgc
agagacagtgagctgactctttatgtacacacttcatgaaataagagtca
cgggtgcctttgggctccaaatccaaggcaaacatcacgatactaaagat
atatttgaaatgtctaaggttatattagaattacagagcagtgtctgaga
acaagtaggggtataaccatcatacaccagtaagatgtatttttgtcagt
tttttttaaactatattattgagtatctagaaacactgaatttttctgtt
ccttattttggatgtttactgtcacttacaatcaggctgttgtgtataat
gacacaatcaacaaagtgtctaataaaccaatagtcagagcaattaaagc
agggtgatgtctttattgggtttttaaaatcccagtaacatgattgaagt
tttaaataatcttcttaaaacttacttcattttcctatttaccaagacta
tttttttttgacaaaaatgaaattgccctcaaggcttgtcataaccttat
actgcaggatcttttaagaattatgaaaaatagtgagggaagctgcccag
gattccaggatgactcttttcccagtgtctgaggttgatatcattgttct
tagaaacctaaaacttcaacatgactacattttaatttacttcatgatgc
ctgttctatacttgagaagaaaccttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50971394_50972443
seq2: B6Ng01-173K17.b_42_1108

seq1  GAATTCTGTAATTAAAGTAAACTATAACTATGATGCCCGCAGGGAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATTAAAGTAAACTATAACTATGATGCCCGCAGGGAATTTT  50

seq1  TTCTTTTGATATTATGAGTAAACTAATGTCAAAGAAAGTAACTGAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGATATTATGAGTAAACTAATGTCAAAGAAAGTAACTGAAAAAA  100

seq1  AAAATAACTGAGCTCTCTTAAAGCTGAAGAGTAAGGAATTCTTCGAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACTGAGCTCTCTTAAAGCTGAAGAGTAAGGAATTCTTCGAGACG  150

seq1  GGTGAAGAATGCCTTGAAAAGAAAAGATGAGATGCCTTATCAAGTTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAATGCCTTGAAAAGAAAAGATGAGATGCCTTATCAAGTTACAC  200

seq1  CTGTCATCCTCATCAATGGTGAGCATTCGATTTCATCTAAAAGGAGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCCTCATCAATGGTGAGCATTCGATTTCATCTAAAAGGAGATGG  250

seq1  GGGTGCGGATGGGGGATGGGACACGTAGGACGCACTATGTATGACTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGGATGGGGGATGGGACACGTAGGACGCACTATGTATGACTGGAG  300

seq1  GATTGGGGAACTGGAGAATTTCAGAAGAAAAACACATCTTAGATTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGGAACTGGAGAATTTCAGAAGAAAAACACATCTTAGATTCCATT  350

seq1  CCAGTTTTAGAACTATTTTCCTTGGGAGATAGCTATTTGGTATTTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTAGAACTATTTTCCTTGGGAGATAGCTATTTGGTATTTTTGCT  400

seq1  AATAGTTTCTGGATCTCAGAAACGCATTATAGAGAAAAAAAGCAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTCTGGATCTCAGAAACGCATTATAGAGAAAAAAAGCAAATATG  450

seq1  CACCATTTAAATCTTGATATTGTTTACAAATTTTTGGTAATAATTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTAAATCTTGATATTGTTTACAAATTTTTGGTAATAATTGGTGA  500

seq1  AAAAAATCCATTTACCTGTCAAAATTTTCATTTGTATGAATTGTGAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCATTTACCTGTCAAAATTTTCATTTGTATGAATTGTGAGAGC  550

seq1  AATGAAGTGCACATTTAGCTTGTTATTTTGTTTTGGAACACATTCTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTGCACATTTAGCTTGTTATTTTGTTTTGGAACACATTCTCTGC  600

seq1  GCTTATTATTTCCATTTACACAGTATAAGACCATTTTATTCTTGTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTATTTCCATTTACACAGTATAAGACCATTTTATTCTTGTTTCCA  650

seq1  TGTTCAATCTTTATCTTTAAATAAATGTAAATTAGGATATGTCTTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATCTTTATCTTTAAATAAATGTAAATTAGGATATGTCTTCTTCT  700

seq1  CTTATATGCCAATCAAACAGGTAGGGGCAAGTGTTCTGGGTAAAGTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGCCAATCAAACAGGTAGGGGCAAGTGTTCTGGGTAAAGTCTTA  750

seq1  GCTAAGTAGGGTATATGACACAGTCTGGTAAAAGTGTGGGACTTGGAC-A  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTAAGTAGGGTATATGACACAGTCTGGTAAAAGTGTGGGACTTGGACAA  800

seq1  TTTGAGTGCTGTTTCTGAGTTACTCTTTTGTTTTAGAGCCTCAGATACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGCTGTTTCTGAGTTACTCTTTTGTTTTAGAGCCTCAGATACAG  850

seq1  AAAGAAAG-AAATAGTTCTAGTAATACATAAACCATACATAATTCTTCAA  898
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGAAAGAAAATAGTTCTAGTAATACATAAACAATACATAATTCTTCAA  900

seq1  -TATTTGCATAAGCAAAACTAGACAGGTCCC-TTTTTTTTTCTGGAG-TA  945
       |||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTATTTGCATAAGCAAAACTAGACAGGTCCCTTTTTTTTTTCTGGAGTTA  950

seq1  GCCG-ATTC-ACCTATACATGGCTT-GCCTAAAGTGG-CTGT-ACCCTTT  990
      |||| |||| ||  ||||||||||| ||||||||||| |||| |||||||
seq2  GCCGAATTCGACTAATACATGGCTTGGCCTAAAGTGGCCTGTAACCCTTT  1000

seq1  -CTAATGTTA-GTAG-ACCATATAA-CCTATG-CATGCAG-TAACAT-GA  1033
       ||||||||| |||| ||||| ||| |||||| ||||||| |||||| ||
seq2  CCTAATGTTAGGTAGAACCATCTAACCCTATGCCATGCAGATAACATGGA  1050

seq1  TGAAAATCA-GTTATTTT  1050
      || |||||| ||||||||
seq2  TG-AAATCACGTTATTTT  1067

seq1: chr15_51175378_51176394
seq2: B6Ng01-173K17.g_68_1095 (reverse)

seq1  GTAAG--TTCTTCTCAA--ATAGTACAGGCATCATG-AGT-AATTTAAAT  44
      |||||  ||||||||||  |||| |||||||||||| ||| |||| ||||
seq2  GTAAGGTTTCTTCTCAAGTATAGAACAGGCATCATGAAGTAAATTAAAAT  50

seq1  GTAGTCATGTTGAAGTTTTAGGTTTCTAAGGACAATGATATCAACCTCAG  94
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAGTCATGTTGAAGTTTTAGGTTTCTAAGAACAATGATATCAACCTCAG  100

seq1  ACACTGGG-AAAGAGTCATCCTGGAATCTGGGGCAGCTTCCCTCACTA-T  142
      |||||||| |||||||||||||||||||  |||||||||||||||||| |
seq2  ACACTGGGAAAAGAGTCATCCTGGAATCCTGGGCAGCTTCCCTCACTATT  150

seq1  TTTCATAATTCTTAAAAGATCTTGCAGTAT-AGGTTCTGACAAGCCTTGA  191
      ||||||||||||||||||||| |||||||| ||||| |||||||||||||
seq2  TTTCATAATTCTTAAAAGATCCTGCAGTATAAGGTTATGACAAGCCTTGA  200

seq1  GGGC-ATTTCATTTTTGTC-AAAAAAAATAGTCTTGGTAATTAGG-AAAT  238
      |||| |||||||||||||| |||||||||||||||||||| |||| ||||
seq2  GGGCAATTTCATTTTTGTCAAAAAAAAATAGTCTTGGTAAATAGGAAAAT  250

seq1  GAAGTAAGTTTTAAGAAGATTATTTAAAACTTCAATCATGTTACTGGGAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAGTAAGTTTTAAGAAGATTATTTAAAACTTCAATCATGTTACTGGGA-  299

seq1  TTTTAAAAACCCAATAAAGACATCACCCTGCTTTAATTGCTCTGACTATT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACCCAATAAAGACATCACCCTGCTTTAATTGCTCTGACTATT  349

seq1  GGTTTATTAGACACTTTGTTGATTGTGTCATTATACACAACAGCCTGATT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTAGACACTTTGTTGATTGTGTCATTATACACAACAGCCTGATT  399

seq1  GTAAGTGACAGTAAACATCCAAAATAAGGAACAGAAAAATTCAGTGTTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGACAGTAAACATCCAAAATAAGGAACAGAAAAATTCAGTGTTTC  449

seq1  TAGATACTCAATAATATAGTTTAAAAAAAACTGACAAAAATACATCTTAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTCAATAATATAGTTTAAAAAAAACTGACAAAAATACATCTTAC  499

seq1  TGGTGTATGATGGTTATACCCCTACTTGTTCTCAGACACTGCTCTGTAAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATGATGGTTATACCCCTACTTGTTCTCAGACACTGCTCTGTAAT  549

seq1  TCTAATATAACCTTAGACATTTCAAATATATCTTTAGTATCGTGATGTTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATAACCTTAGACATTTCAAATATATCTTTAGTATCGTGATGTTT  599

seq1  GCCTTGGATTTGGAGCCCAAAGGCACCCGTGACTCTTATTTCATGAAGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGATTTGGAGCCCAAAGGCACCCGTGACTCTTATTTCATGAAGTG  649

seq1  TGTACATAAAGAGTCAGCTCACTGTCTCTGCATGCCGCTCCACTTAGCCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAAAGAGTCAGCTCACTGTCTCTGCATGCCGCTCCACTTAGCCA  699

seq1  GAAAATGAAGGAGGTGAAAGTATTGGTGTTCACCCAACTGCCATCCCAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAAGGAGGTGAAAGTATTGGTGTTCACCCAACTGCCATCCCAAC  749

seq1  CCAACTCCACATCCTTTGGTGTTCTTAGGTTGCCCATGGCATTTTCCTTA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCACATCCTTTGGTGTTCTTAGGTTGCCCATGGCATTTTCCTTA  799

seq1  AGTAGAAATTAAGCAATATTCTTTTTCTCATAGCTCAAAGTCTAAGAAAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATTAAGCAATATTCTTTTTCTCATAGCTCAAAGTCTAAGAAAC  849

seq1  CAGCTCAAAGCTATATACGTTCTGAGGCAACGGTCAGGCTTTGAGGAGAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAAGCTATATACGTTCTGAGGCAACGGTCAGGCTTTGAGGAGAC  899

seq1  CAGGGCTGCTAATATCTAACTCATACTTTCTCTCTAATGAAATAATCGCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGCTAATATCTAACTCATACTTTCTCTCTAATGAAATAATCGCC  949

seq1  AGAAGAAGAGTCGCAGTCAGACTGATGAGTAAGAGAACACCCACAAACAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAGTCGCAGTCAGACTGATGAGTAAGAGAACACCCACAAACAA  999

seq1  CTCAGTGCACCATAAGACCACTTGAATTC  1017
      |||||||||||||||||||||||||||||
seq2  CTCAGTGCACCATAAGACCACTTGAATTC  1028