BAC Information

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BAC

Clone NameB6Ng01-173N19
Chromosome15 (Build37)
Map Location 76,140,658 - 76,263,973
singlet/doubletdoublet
Overlap geneExosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5
Upstream geneLOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah
Downstream geneBop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173N19.bB6Ng01-173N19.g
ACCGA002097GA002098
length5481,118
definitionB6Ng01-173N19.b B6Ng01-173N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,140,658 - 76,141,211)(76,262,568 - 76,263,973)
sequence
aacaggcacacgggaaagggctggtggcaaagaactggacggagcagcag
tggtcccacaaatgacaatggaatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatagatattttactct
ggacttttataaaggacttccttccatccagtttgtcttgtaaaattatt
atgtgtggcatccacttttattctgtgatgttttcttgggggggggtatt
tgctgttcatatttccttttttgcttgcttgaagagtgcagctttcactg
gttaatttatggattctccagggatttcccttccacagcccaggaaactc
tggcaaaggtcattcatttgtggaagagaatgggtgtaccggtccagctg
gtacaaagtcaaacagtcctctaagcggggaataaggatgattataggaa
agatagaaaaaaagatgcaagagacagatacgggagggctgcgggtcatc
actacgccagccccgagtgtatttctcatagacttcttataccacagc
gaattccttggggaggcagcatataacaggccctattagcctcctccctg
cccccccccatctctcccatgaagtgggtggttgaggcctctgaggcgca
gggctctgtctgcacccactcaagcccagtgactgcccgggcctcaccat
catctgtgtcaccagctctgttttcctcaagaagtggaaggagctggctt
gtgcgctgctgcacatggcctggctgaccatgcacaggctctggacgagg
cagagcttcagggccgggtcctaggggaagagctggctgcaggaggtttg
catatctgcccccagaactgccccagagtagccacagagcagagcccagc
ctcagaaactggagttcacgccctttcttgaacagccagagccgctgttc
actgtgaccaaaaagcccgacagcagcctcctgactgaggagaaacctag
gacctgaagttccagggccttggcccacaggggaactgctgtgtagtatg
acagcttcatgggagacaggagagaggccattctgagaaacagagggcca
aacctcttactcctatgggctgggtgggggaaacaagaaactaaaagaac
ctcagccatccagcccactccctcacccctgaggctccccactcctcagg
aagaaagaattgtccctcacaaaggcctgccaggttagtatcaaggagtc
acagaggaagtatgttaatgagaccaagggaacctttggcccttttcaat
agttctgggcttaactagccctcccctaggtgctctctggggtctagaga
aaggcagccccaaaagcatttggggaacagagccaaaggagcctggagct
atcgctgggctatgttgggggggacacagctgtgagtggcctatcagctg
tctctaaaggatgttagcccagggatcaattaccccagaggcagagaagc
ctggcctctgtcctcagcgggcgctttgcttagcctgcttccacagggga
agtgggccaggagtcttcagagcctgtactccaccacactttccccagta
ccaccatggccagtagccagcgagcttctagtttggctctgttctcaaag
tccagctctgaggtagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76140658_76141211
seq2: B6Ng01-173N19.b_46_599

seq1  GAATTCAACAGGCACACGGGAAAGGGCTGGTGGCAAAGAACTGGACGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGGCACACGGGAAAGGGCTGGTGGCAAAGAACTGGACGGAG  50

seq1  CAGCAGTGGTCCCACAAATGACAATGGAATATATATATATATATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGGTCCCACAAATGACAATGGAATATATATATATATATATATAT  100

seq1  ATATATATATATATATATATATATATATATATATAAATCCAATGTTATTT  150
      ||||||||||||||||||||||||||||||||||| ||  |  | |||||
seq2  ATATATATATATATATATATATATATATATATATATATATATAGATATTT  150

seq1  TACACTGGACTTTTATAAAGGACTTCCTTCCATCCAGTTTGTCTTGTAAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGGACTTTTATAAAGGACTTCCTTCCATCCAGTTTGTCTTGTAAA  200

seq1  ATTATTATTCCATGCATCCACTTTGATTCTGTGACCTTTTCTTCATTATT  250
      ||||||||     ||||||||||| |||||||||  |||||||       
seq2  ATTATTATGTGTGGCATCCACTTTTATTCTGTGATGTTTTCTTGGGGGGG  250

seq1  GCTATTTGCTATTCAGATTTCCTTTTTTGCTTGCTTGATGAGTGCAGCTT  300
      | |||||||| |||| |||||||||||||||||||||| |||||||||||
seq2  GGTATTTGCTGTTCATATTTCCTTTTTTGCTTGCTTGAAGAGTGCAGCTT  300

seq1  TCACTGGTTAATTTATGGATTCTCCAGGGATTTCCCTTCCACAGCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTTAATTTATGGATTCTCCAGGGATTTCCCTTCCACAGCCCAGG  350

seq1  AAACTCTGGCAAAGGTCATTCATTTGTGGAAGAGAATGGGTGTACCGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGGCAAAGGTCATTCATTTGTGGAAGAGAATGGGTGTACCGGTC  400

seq1  CAGCTGGTACGAAGTCAAACAGTCCTCTAAGCGGGGAATAAGGATGATTA  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTACAAAGTCAAACAGTCCTCTAAGCGGGGAATAAGGATGATTA  450

seq1  TAGGAAAGATAGAAAAAAAGATGCAAGAGACAGATACGGGAGGGCTGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGATAGAAAAAAAGATGCAAGAGACAGATACGGGAGGGCTGCGG  500

seq1  GTCATCACTACGCCAGCCCCGAGTGTATTTCTCATAGACTTCTTATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACTACGCCAGCCCCGAGTGTATTTCTCATAGACTTCTTATACCA  550

seq1  CAGC  554
      ||||
seq2  CAGC  554

seq1: chr15_76262568_76263973
seq2: B6Ng01-173N19.g_70_1187 (reverse)

seq1  CTCTACCTCAGGATCGAAGCGAGCACGAAGTGGAAAGAATGAAGAGCTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTGATCCTGTGCTACGGGCACGTGGCTGCCCAGGCCCCTCGGGAGCTGGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGCCAGGGTAGAGTCTGATATCCTGCGCAGCATGTTCCAGTGCTTCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACACCAAGGTGGGCGTTGCCGATGTCCGTGGGGGCCAGTCACACAACGCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGTCTTACCTTATTTCACTCTTTGTTGTTTAGGTTCTGGGAATAAAGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAGACCAAGGTATAGTGTATGGCGACCGACCATGTGTGAACTATGCTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCTCT-CCTCTGGGCTGGGCTTTG-GGACAGAGCCAAACCTAG-AGC  347
          |||| |||| | ||||| ||||| | ||||||||||| |||| |||
seq2  ----CTCTACCTCAGAGCTGGACTTTGAGAACAGAGCCAAA-CTAGAAGC  45

seq1  TCGCTGGGCTTCCTGGCCATGGTGGTCCTGGGG-AAGTGTGGTGGAGTAC  396
      |||||||   | |||||||||||||| |||||| ||||||||||||||||
seq2  TCGCTGG--CTACTGGCCATGGTGGTACTGGGGAAAGTGTGGTGGAGTAC  93

seq1  A-GCTCTG-AGACTCCT-GCCCACTT-CCCTGTGG-AGCA-GCTAAGC-A  439
      | |||||| |||||||| |||||||| |||||||| |||| ||||||| |
seq2  AGGCTCTGAAGACTCCTGGCCCACTTCCCCTGTGGAAGCAGGCTAAGCAA  143

seq1  AGCGCCCGCTGAGGACAGA-GCCAGGCTTCTCTGCCTCT-GGGTAATTGA  487
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AGCGCCCGCTGAGGACAGAGGCCAGGCTTCTCTGCCTCTGGGGTAATTGA  193

seq1  T-CCTGGGCT-ACATCC-TTAGAGACAGCTGATAGGCCACTCACAGCTGT  534
      | |||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TCCCTGGGCTAACATCCTTTAGAGACAGCTGATAGGCCACTCACAGCTGT  243

seq1  GTCCCCCCC-ACATAGCCCAGCGATAGCTCCAGGCTCCTTTGGCTCTGTT  583
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCCAACATAGCCCAGCGATAGCTCCAGGCTCCTTTGGCTCTGTT  293

seq1  CCC--AATGCTTTTGGGGCTGCCTTTCTCTAGACCCCAGAGAGCACCTAG  631
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATGCTTTTGGGGCTGCCTTTCTCTAGACCCCAGAGAGCACCTAG  343

seq1  GGGAGGGCTAGTTAAGCCCAGAACTATTGAAAAGGGCCAAAGGTTCCCTT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCTAGTTAAGCCCAGAACTATTGAAAAGGGCCAAAGGTTCCCTT  393

seq1  GGTCTCATTAACATACTTCCTCTGTGACTCCTTGATACTAACCTGGCAGG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATTAACATACTTCCTCTGTGACTCCTTGATACTAACCTGGCAGG  443

seq1  CCTTTGTGAGGGACAATTCTTTCTTCCTGAGGAGTGGGGAGCCTCAGGGG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGAGGGACAATTCTTTCTTCCTGAGGAGTGGGGAGCCTCAGGGG  493

seq1  TGAGGGAGTGGGCTGGATGGCTGAGGTTCTTTTAGTTTCTTGTTTCCCCC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGTGGGCTGGATGGCTGAGGTTCTTTTAGTTTCTTGTTTCCCCC  543

seq1  ACCCAGCCCATAGGAGTAAGAGGTTTGGCCCTCTGTTTCTCAGAATGGCC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCCATAGGAGTAAGAGGTTTGGCCCTCTGTTTCTCAGAATGGCC  593

seq1  TCTCTCCTGTCTCCCATGAAGCTGTCATACTACACAGCAGTTCCCCTGTG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGTCTCCCATGAAGCTGTCATACTACACAGCAGTTCCCCTGTG  643

seq1  GGCCAAGGCCCTGGAACTTCAGGTCCTAGGTTTCTCCTCAGTCAGGAGGC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGCCCTGGAACTTCAGGTCCTAGGTTTCTCCTCAGTCAGGAGGC  693

seq1  TGCTGTCGGGCTTTTTGGTCACAGTGAACAGCGGCTCTGGCTGTTCAAGA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCGGGCTTTTTGGTCACAGTGAACAGCGGCTCTGGCTGTTCAAGA  743

seq1  AAGGGCGTGAACTCCAGTTTCTGAGGCTGGGCTCTGCTCTGTGGCTACTC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGTGAACTCCAGTTTCTGAGGCTGGGCTCTGCTCTGTGGCTACTC  793

seq1  TGGGGCAGTTCTGGGGGCAGATATGCAAACCTCCTGCAGCCAGCTCTTCC  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGTTCTGGGGGCAGATATGCAAACCTCCTGCAGCCAGCTCTTCC  843

seq1  CCTAGGACCCGGCCCTGAAGCTCTGCCTCGTCCAGAGCCTGTGCATGGTC  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACCCGGCCCTGAAGCTCTGCCTCGTCCAGAGCCTGTGCATGGTC  893

seq1  AGCCAGGCCATGTGCAGCAGCGCACAAGCCAGCTCCTTCCACTTCTTGAG  1231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCCATGTGCAGCAGCGCACAAGCCAGCTCCTTCCACTTCTTGAG  943

seq1  GAAAACAGAGCTGGTGACACAGATGATGGTGAGGCCCGGGCAGTCACTGG  1281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAGCTGGTGACACAGATGATGGTGAGGCCCGGGCAGTCACTGG  993

seq1  GCTTGAGTGGGTGCAGACAGAGCCCTGCGCCTCAGAGGCCTCAACCACCC  1331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTGGGTGCAGACAGAGCCCTGCGCCTCAGAGGCCTCAACCACCC  1043

seq1  ACTTCATGGGAGAGATGGGGGGGGGCAGGGAGGAGGCTAATAGGGCCTGT  1381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGGGAGAGATGGGGGGGGGCAGGGAGGAGGCTAATAGGGCCTGT  1093

seq1  TATATGCTGCCTCCCCAAGGAATTC  1406
      |||||||||||||||||||||||||
seq2  TATATGCTGCCTCCCCAAGGAATTC  1118