BAC Information

Click to search

BAC

Clone NameB6Ng01-174J01
Chromosome15 (Build37)
Map Location 20,448,714 - 20,449,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174J01.bB6Ng01-174J01.g
ACCGA002613GA002614
length1,157854
definitionB6Ng01-174J01.b B6Ng01-174J01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaggtctatataaaattcacacatatgtatacataacatat
acatgttcactccttgatttttacttttcatgaagtcattttttctttac
atcagagacataaaaatctgattcaaatcccaaactcacagaacagcatc
aaaagcaccaacagtatagtccaatataaaacacatttaaatgtaaatta
tatattacagcacagtatgaaagtttcatatgttttatataaacatccta
tgaaaataaaagtattaatattaaataatagtctagaagtttgtttttag
actttttagcaaaaaaattcatgattgctaaactaaattgcttacatatg
ttcaacttatagagataataaattgaatgtatttttttttcttctgccaa
gaatgaatggtgggcagtaacagtgatcaaccactgataaatatttagaa
tatgtcatgactatgcagctgttagaggaataataataaaaacaaccctg
tgtattttctaaaatgggaaggctacatcagaggatacaagtgaaaatac
ttcctgaataatttgtaatttctgactttataatacataatattgccaat
gacttgttaaaatgtataagtgcatttgtattaccttgttagagttaatg
gcttagaaaataatacaatgaaattgtcatagaggaatggctattatact
tttatttgcagtctgatgatgagatattactgcaaagaaacttttacatg
aaatgtttcttagaaataccactcgtctttaactacttattgcaaaccca
aaataccattcttttccaatctccagacaataattgtgtccatttatcac
aaagcagtccttgtatcaccttaatgaatatgtttttaaagaagtttatc
acttgctttatattagaaattataaataatgcatacatattattgtacac
atatgaacacacaaattttcagaaaacaccaaattctttctttctgttaa
ctaaaacaatcctttgtgtattccatttgttaggagaaaagatctgtgaa
ttccaaaatatgttattcaaaaatggtattcatataaaaaaaaggataac
agtcctggctcttgtcaatggtgtgaaagcaattgctggttaagccaatt
tgtaact

gaattctcaggagaggaatattgaatggcctagacacacttatataatat
tcaacatccttaattattagggaaattcaaatgaaaaccaccgtgagatt
ccagcttaagccaatcagaatggctaagactaaagtgacagtacatgctg
gcacgagtgtggagaaagcagaacactcatccattgcaaataaggttgca
aacttgtagaaccgctctagtaatcaatctggtgattttttttttcagaa
aaatggaaatagttttacctagagatgcaggtatactacttctgggcata
tacctaaaagatgctcaaacataccctaaggacacatgctctactatgtt
cacagcattattcttaacaggcagactggtaaaaacctaaatgtctctca
aacgaagaacagattcagaaaatgttattttacacaatgtaatatactat
tcatctattaaagatgaggaattgtgcaggtgaatgtatggaactagaaa
atatcatcctgagtgaagtaacccagattcaaaagacatgcatgatatat
actcactcactaataagtggatattagcgataaagtataggttgccctcg
atacattccaaagacccaaagaagttaaacaagaaggaaggcccaaacaa
ggatgtttgagtctcacttagaaggaagaataaaatagtcataggaggca
gagggagaaaaaatgggtgggaaaggagatggtaagaaaactggggagtc
aagatcgtgtataaggagagaccacaaagagggccagaggaccaggagaa
atgaatggaaatcagcagttgcctggtgagggggttagaagtttgggtgg
ggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20448714_20449849
seq2: B6Ng01-174J01.b_49_1205 (reverse)

seq1  AGTTAC-AATTTGCTTACCCAGCAATGGCTTTCACAC--ATGACCAAAGA  47
      |||||| |||| ||||| |||||||| ||||||||||   ||||  ||||
seq2  AGTTACAAATTGGCTTAACCAGCAATTGCTTTCACACCATTGAC--AAGA  48

seq1  G-CAGGACTGT--TTCTTTTTTTTAT---GATACCATATTTGAAT-ACAT  90
      | |||||||||  | |||||||||||    ||||||| ||||||| ||||
seq2  GCCAGGACTGTTATCCTTTTTTTTATATGAATACCATTTTTGAATAACAT  98

seq1  A-TTTGGAA-TCACAGATC-TTTCTCCTAAACAAAAGGAATACACAA--G  135
      | ||||||| ||||||||| |||||||| |||||| |||||||||||  |
seq2  ATTTTGGAATTCACAGATCTTTTCTCCT-AACAAATGGAATACACAAAGG  147

seq1  ATTGTTTTAGTTAACAG-AAGAAAGA--TTTGTG-TTTCTGAAAATTTGT  181
      ||||||||||||||||| ||||||||  || ||| |||||||||||||||
seq2  ATTGTTTTAGTTAACAGAAAGAAAGAATTTGGTGTTTTCTGAAAATTTGT  197

seq1  GTGTTCATATGTGTACA--TATATGTATGCA-TATTTAT-ATTTCTAATA  227
      |||||||||||||||||   ||||||||||| ||||||| ||||||||||
seq2  GTGTTCATATGTGTACAATAATATGTATGCATTATTTATAATTTCTAATA  247

seq1  TAAAGCAAGTGATAAACTTCTTT-AAAACATATTCATTAAGGTGATACAA  276
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAAAGCAAGTGATAAACTTCTTTAAAAACATATTCATTAAGGTGATACAA  297

seq1  GGACTGCTTTGTGATAAATGGACACAATTATTGTCTGGAGATTGGAAAAG  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTTGTGATAAATGGACACAATTATTGTCTGGAGATTGGAAAAG  347

seq1  AATGGTATTTTGGGTTTGCAATAAGTAGTTAAAGACGAGTGGTATTTCTA  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATTTTGGGTTTGCAATAAGTAGTTAAAGACGAGTGGTATTTCTA  397

seq1  AGAAACATTTCATGTAAAAGTTTCTTTGCAGTAATATCTCATCATCAGAC  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTTCATGTAAAAGTTTCTTTGCAGTAATATCTCATCATCAGAC  447

seq1  TGCAAATAAAAGTATAATAGCCATTCCTCTATGACAATTTCATTGTATTA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAAAAGTATAATAGCCATTCCTCTATGACAATTTCATTGTATTA  497

seq1  TTTTCTAAGCCATTAACTCTAACAAGGTAATACAAATGCACTTATACATT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGCCATTAACTCTAACAAGGTAATACAAATGCACTTATACATT  547

seq1  TTAACAAGTCATTGGCAATATTATGTATTATAAAGTCAGAAATTACAAAT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGTCATTGGCAATATTATGTATTATAAAGTCAGAAATTACAAAT  597

seq1  TATTCAGGAAGTATTTTCACTTGTATCCTCTGATGTAGCCTTCCCATTTT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAAGTATTTTCACTTGTATCCTCTGATGTAGCCTTCCCATTTT  647

seq1  AGAAAATACACAGGGTTGTTTTTATTATTATTCCTCTAACAGCTGCATAG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACACAGGGTTGTTTTTATTATTATTCCTCTAACAGCTGCATAG  697

seq1  TCATGACATATTCTAAATATTTATCAGTGGTTGATCACTGTTACTGCCCA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACATATTCTAAATATTTATCAGTGGTTGATCACTGTTACTGCCCA  747

seq1  CCATTCATTCTTGGCAGAAGAAAAAAAAATACATTCAATTTATTATCTCT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATTCTTGGCAGAAGAAAAAAAAATACATTCAATTTATTATCTCT  797

seq1  ATAAGTTGAACATATGTAAGCAATTTAGTTTAGCAATCATGAATTTTTTT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTGAACATATGTAAGCAATTTAGTTTAGCAATCATGAATTTTTTT  847

seq1  GCTAAAAAGTCTAAAAACAAACTTCTAGACTATTATTTAATATTAATACT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAGTCTAAAAACAAACTTCTAGACTATTATTTAATATTAATACT  897

seq1  TTTATTTTCATAGGATGTTTATATAAAACATATGAAACTTTCATACTGTG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCATAGGATGTTTATATAAAACATATGAAACTTTCATACTGTG  947

seq1  CTGTAATATATAATTTACATTTAAATGTGTTTTATATTGGACTATACTGT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATATATAATTTACATTTAAATGTGTTTTATATTGGACTATACTGT  997

seq1  TGGTGCTTTTGATGCTGTTCTGTGAGTTTGGGATTTGAATCAGATTTTTA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTTTGATGCTGTTCTGTGAGTTTGGGATTTGAATCAGATTTTTA  1047

seq1  TGTCTCTGATGTAAAGAAAAAATGACTTCATGAAAAGTAAAAATCAAGGA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGATGTAAAGAAAAAATGACTTCATGAAAAGTAAAAATCAAGGA  1097

seq1  GTGAACATGTATATGTTATGTATACATATGTGTGAATTTTATATAGACCT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATGTATATGTTATGTATACATATGTGTGAATTTTATATAGACCT  1147

seq1  TAATGAATTC  1136
      ||||||||||
seq2  TAATGAATTC  1157


| Home | SequenceCutter | Blast | Download |