BAC Information

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BAC

Clone NameB6Ng01-179M14
Chromosome15 (Build37)
Map Location 70,965,237 - 71,028,522
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179M14.bB6Ng01-179M14.g
ACCGA006412GA006413
length2951,161
definitionB6Ng01-179M14.b B6Ng01-179M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,965,237 - 70,965,524)(71,027,357 - 71,028,522)
sequence
actctgtatatcaggctgacctagaactcatgcctgcctctgcctataat
tcaaggcatgtgacgccactgctcagcttattctcactttccttaccaga
gctttcctttatgattgctaacccaagtccaagtgccatatcttctacat
ggtatctatccactacagataatatttcttcttcttcttcttcttctttt
cctcctcctcctcctcctcctcctccttctttttcttcctctcctcctcc
tcctcctccttcctcctccacctccttctcccccctttctccttc

gaattcaatgggcagatggaaaatggttgaatgaatgtcagagtttgaaa
atgtaatgaaaaaagatcatgatggtatgttgtgtataaaattaagtttt
atcaagaagatgatcgagagaaatattggctgcagcatttgaatcctaaa
gatttgtcattgtatgcacacattaatacatctctcagccttcattagag
aagcttcaatttgtaatatatggtgattaacacggagactcacagctggc
caaggtgcagagaataagagatgtaaatgggacatttacacctccaaaga
tgatggatgactacagaaaaaaatattccagacaaagcagggctgttgca
cctatgaactcagagtggctatgacagcattcagaaaacttatctaaact
caagccagaccaaataccagcatgaagggggaagttgggcatgcaatccc
acacctgcatggagaaccaatggcaacaaagagctgctggaaagaaagta
ttaattttctataagatttttgtccccttacaagttgatcacacttcaat
ggaaggccacaaaagaatgtatggacaacaccaactcaacttgatgggtt
aaaaaaatatgaacacaaagttggcagggcagggaagaatggttgtactg
gggagaactgggagggggaggtaaatatagcaaagcacgtggcacaaaat
tctcaaagagcccacaaaatatgcattaagctagaatacaagtaattgta
gatatgccttctacattttccaaagtttaaaatataattgtggttggctt
tttttttaaataaataatcaactaataaaggttgcttagcaactctttca
acctaaaatattaagaagtgttagagaaaatcttttttatgcaaagattg
cttcccataggggataattttgaagggtgatgcccaaatgctaaatgtca
cacacacccagggaaacttaaatcataagagaaggatgagcatttgattt
gacagcatttcctcagttttcagaactgtgatagttcccacaatgagtct
taattggacccactcagagctgatggagcaattcatgtaatgtgcatgtg
cctggcaagtgaattctgcatgccttgaatagaagagggtaacctgttct
tggaagcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_70965237_70965524
seq2: B6Ng01-179M14.b_50_344

seq1  ACTCTGTATATCAGGCTGACCTAGAACTCATGCCTGCCTCTGCCTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATATCAGGCTGACCTAGAACTCATGCCTGCCTCTGCCTATAAT  50

seq1  TCAAGGCATGTGACGCCACTGCTCAGCTTATTCTCACTTTCCTTACCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCATGTGACGCCACTGCTCAGCTTATTCTCACTTTCCTTACCAGA  100

seq1  GCTTTCCTTTATGATTGCTAACCCAAGTCCAAGTGCCATATCTTCTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTTTATGATTGCTAACCCAAGTCCAAGTGCCATATCTTCTACAT  150

seq1  GGTATCTATCCACTACAGATAATATTTCTTCTTCTTCTTCTTCTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTATCCACTACAGATAATATTTCTTCTTCTTCTTCTTCTTCTTTT  200

seq1  CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTTTTCTTCCTCTCCTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTTTTCTTCCTCTCCTCCTCC  250

seq1  TCCTCCTCCTTCCTCCTCCTCCTCCTT-------CCTCCTCCTTC  288
      ||||||||||||||||||| |||||||       | | |||||||
seq2  TCCTCCTCCTTCCTCCTCCACCTCCTTCTCCCCCCTTTCTCCTTC  295


seq1: chr15_71027357_71028522
seq2: B6Ng01-179M14.g_67_1227 (reverse)

seq1  ACAGGCTTCCA--GACAG--TCACCTCTTCTTTACTCAGGCATGACCAG-  45
      |||||||||||   ||||  |  |||||||| | |  |||||||  ||| 
seq2  ACAGGCTTCCAAGAACAGGTTACCCTCTTCTATTC-AAGGCATG--CAGA  47

seq1  ATCCACCTGCAGGGCACATGCCACATTACCACGATGTGCT-CATCAGCTC  94
      || ||| |||  |||||||| ||||||| || ||  |||| |||||||||
seq2  ATTCACTTGCCAGGCACATG-CACATTA-CATGAATTGCTCCATCAGCTC  95

seq1  TGAGTGGGTCCAATTAAGACCTCATTTGTGGGAACCTAATCACAGTTTCC  144
      ||||||||||||||||||| |||| ||||||||||   |||||||||  |
seq2  TGAGTGGGTCCAATTAAGA-CTCA-TTGTGGGAAC--TATCACAGTT--C  139

seq1  TGAAAACTGGAGGAAATGCTGTTCCAATCAAATGCCTCATCCCTTCTCCT  194
      |||||||| |||||||||||| || ||||||||| ||||| |||||| ||
seq2  TGAAAACT-GAGGAAATGCTG-TCAAATCAAATG-CTCAT-CCTTCT-CT  184

seq1  TATGATTTAAGTTT-CCTGGTGTTGTGTGACATTTAGCATTT-GGCATCA  242
      |||||||||||||| |||||   ||||||||||||||||||| |||||||
seq2  TATGATTTAAGTTTCCCTGGGTGTGTGTGACATTTAGCATTTGGGCATCA  234

seq1  CCC-TCAAAATTATCCCCTATGGGAAGCAATCTTTGCAT-AAAAAGATTT  290
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTTCAAAATTATCCCCTATGGGAAGCAATCTTTGCATAAAAAAGATTT  284

seq1  TCTCTAACACTTCTTAATATTTTAGGTTGAAAGAGTTGCTAAGCAACCTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACACTTCTTAATATTTTAGGTTGAAAGAGTTGCTAAGCAACCTT  334

seq1  TATTAGTTGATTATTTATTT-AAAAAAAAGCCAACCACAATTATATTTTA  389
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATTAGTTGATTATTTATTTAAAAAAAAAGCCAACCACAATTATATTTTA  384

seq1  AACTTTGGAAAATGTAGAAGGCATATCTACAATTACTTGTATTCTAGCTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGAAAATGTAGAAGGCATATCTACAATTACTTGTATTCTAGCTT  434

seq1  AATGCATATTTTGTGGGCTCTTTGAGAATTTTGTGCCACGTGCTTTGCTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATATTTTGTGGGCTCTTTGAGAATTTTGTGCCACGTGCTTTGCTA  484

seq1  TATTTACCTCCCCCTCCCAGTTCTCCCCAGTACAACCATTCTTCCCTGCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCTCCCCCTCCCAGTTCTCCCCAGTACAACCATTCTTCCCTGCC  534

seq1  CTGCCAACTTTGTGTTCATATTTTTTTAACCCATCAAGTTGAGTTGGTGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACTTTGTGTTCATATTTTTTTAACCCATCAAGTTGAGTTGGTGT  584

seq1  TGTCCATACATTCTTTTGTGGCCTTCCATTGAAGTGTGATCAACTTGTAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATACATTCTTTTGTGGCCTTCCATTGAAGTGTGATCAACTTGTAA  634

seq1  GGGGACAAAAATCTTATAGAAAATTAATACTTTCTTTCCAGCAGCTCTTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAAAATCTTATAGAAAATTAATACTTTCTTTCCAGCAGCTCTTT  684

seq1  GTTGCCATTGGTTCTCCATGCAGGTGTGGGATTGCATGCCCAACTTCCCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATTGGTTCTCCATGCAGGTGTGGGATTGCATGCCCAACTTCCCC  734

seq1  CTTCATGCTGGTATTTGGTCTGGCTTGAGTTTAGATAAGTTTTCTGAATG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTGGTATTTGGTCTGGCTTGAGTTTAGATAAGTTTTCTGAATG  784

seq1  CTGTCATAGCCACTCTGAGTTCATAGGTGCAACAGCCCTGCTTTGTCTGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATAGCCACTCTGAGTTCATAGGTGCAACAGCCCTGCTTTGTCTGG  834

seq1  AATATTTTTTTCTGTAGTCATCCATCATCTTTGGAGGTGTAAATGTCCCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTTTCTGTAGTCATCCATCATCTTTGGAGGTGTAAATGTCCCA  884

seq1  TTTACATCTCTTATTCTCTGCACCTTGGCCAGCTGTGAGTCTCCGTGTTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCTCTTATTCTCTGCACCTTGGCCAGCTGTGAGTCTCCGTGTTA  934

seq1  ATCACCATATATTACAAATTGAAGCTTCTCTAATGAAGGCTGAGAGATGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATATATTACAAATTGAAGCTTCTCTAATGAAGGCTGAGAGATGT  984

seq1  ATTAATGTGTGCATACAATGACAAATCTTTAGGATTCAAATGCTGCAGCC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTGTGCATACAATGACAAATCTTTAGGATTCAAATGCTGCAGCC  1034

seq1  AATATTTCTCTCGATCATCTTCTTGATAAAACTTAATTTTATACACAACA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTCTCGATCATCTTCTTGATAAAACTTAATTTTATACACAACA  1084

seq1  TACCATCATGATCTTTTTTCATTACATTTTCAAACTCTGACATTCATTCA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCATGATCTTTTTTCATTACATTTTCAAACTCTGACATTCATTCA  1134

seq1  ACCATTTTCCATCTGCCCATTGAATTC  1166
      |||||||||||||||||||||||||||
seq2  ACCATTTTCCATCTGCCCATTGAATTC  1161


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