BAC Information

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BAC

Clone NameB6Ng01-179N17
Chromosome15 (Build37)
Map Location 84,438,004 - 84,606,582
singlet/doubletdoublet
Overlap geneArhgap8, 3110043J09Rik
Upstream geneScube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
Downstream genePhf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179N17.bB6Ng01-179N17.g
ACCGA006460GA006461
length752591
definitionB6Ng01-179N17.b B6Ng01-179N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,438,004 - 84,438,751)(84,605,992 - 84,606,582)
sequence
gaattccacacccctaagccccttaccccataaaagcccctggcttttga
gcctcggggccggcatctgttatctcctgtgtgggattcatgccggtccg
gagctccgtaattaaacgtcctcatgtaattacagcgagtgggtcctcgt
gtttctttgggtgctctcacactcccgagactagagtgggggtccccgaa
agggggtcctacactatcagcatcccatagcccagaggccaggagcagac
aggctgctgcttctttttttttgttgcccccccccaattcataaaagctg
aatgaatttcatgaaagcagacatttttaaaaacttaaaatcaagaggga
aattgtttacaagggaaaaacaaaaaacaaaacaaaacaaaacaaaaaaa
aaaaaaaaccagttccctcagggtctgcccagcaaaaatccacaaggaat
tttctccttgcccctgggaccgccccttctgtccctgagacctccccctt
ctgcccctgggacttgcccttttttcccctgggacctgcccttttgtcca
tgcagtggcttgggggtcccaggacaggtggcaaggtatggtcctgacat
ttgggacttcacaccaagctgctgcctcccccaccctgacaggaagacca
catgaactgatcccaacatggctgtccaacaccaaatagtccatagcctt
gtccaccagcagccttttgaccctgtgaaactgagagactcaaaccatcc
tt
gaattcattctttctctgatggtcaaccacaagttctgggcagcctgccg
aacctctgcagtcaactggcaatcgctgtcatctccgcaaaagtgaatgc
ttggataatctatcccctgtgtccgggagattgagtcctcatgcaggctc
tgttgtcattgttttaagctgggacatgtcgtgtgcttcctacgtgtgac
tgccataatcactttcttttgctgtgggaacgatggggagattgtactga
gacacgggaaggtgacggggccacgcagcgctgggctgggattccacaat
taccgattgtgaagggaaactgttatcaaaggagcggcaggagaccgtct
tggggcacctctccaagtcaggaaatttgaaacatatatttcactgacac
gcatttccctgtaaaccccactgcataatgcatgaggcttgatttaatgt
cattgttaattcggggctcacaatggtgggctcttaagggagccatcatt
tttctttctttctttctccctggcagcagaactctgagaccctttggggt
tattcagcattctgagagcacagacgccatggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84438004_84438751
seq2: B6Ng01-179N17.b_46_796

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAGCCCCTGGCTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAGCCCCTGGCTTTTGA  50

seq1  GCCTCGGGGCCGGCATCTGTTATCTCCTGTGTGGGATTCATGCCGGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGGGCCGGCATCTGTTATCTCCTGTGTGGGATTCATGCCGGTCCG  100

seq1  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCGAGTGGGTCCTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCGAGTGGGTCCTCGT  150

seq1  GTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCCCCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCCCCGAA  200

seq1  AGGGGGTCCTACACTATCAGCATCCCATAGCCCAGAGGCCAGGAGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTCCTACACTATCAGCATCCCATAGCCCAGAGGCCAGGAGCAGAC  250

seq1  AGGCTGCTGCTTCTTTTTTTTTGTTGCCCCCCCCCAATTCATAAAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTGCTTCTTTTTTTTTGTTGCCCCCCCCCAATTCATAAAAGCTG  300

seq1  AATGAATTTCATGAAAGCAGACATTTTTAAAAACTTAAAATCAAGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTCATGAAAGCAGACATTTTTAAAAACTTAAAATCAAGAGGGA  350

seq1  AATTGTTTACAAGGGAAAAACAAAAAACAAAACAAAACAAAACAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTACAAGGGAAAAACAAAAAACAAAACAAAACAAAACAAAAAAA  400

seq1  AAAAAAAACCAGTTCCCTCAGGGTCTGCCCAGCAAAAATCCACAAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCAGTTCCCTCAGGGTCTGCCCAGCAAAAATCCACAAGGAAT  450

seq1  TTTCTCCTTGCCCCTGGGACCGCCCCTTCTGTCCCTGAGACCTCCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTGCCCCTGGGACCGCCCCTTCTGTCCCTGAGACCTCCCCCTT  500

seq1  CTGCCCCTGGGACTTGCCCTTTTTTCCCCTGGGACCTGCCCTTTTGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGGGACTTGCCCTTTTTTCCCCTGGGACCTGCCCTTTTGTCCA  550

seq1  TGCAGTGGCTTGGGGGTCCCAGGACAGGTGGCAAGGTATGGTCCTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGCTTGGGGGTCCCAGGACAGGTGGCAAGGTATGGTCCTGACAT  600

seq1  TTGGGACTTCACACCAAGCTGCTGCCTCCCCCACCCTGACAGGAAGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTTCACACCAAGCTGCTGCCTCCCCCACCCTGACAGGAAGACCA  650

seq1  CATGAACTGATCCCAACATGGCTGTCCAACACCAAATAGTCCATAGCC-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGAACTGATCCCAACATGGCTGTCCAACACCAAATAGTCCATAGCCTT  700

seq1  GTCCACCAGCAGCC-TTTGACCCTGTG-AACTGAGAGACTCAAACCATCC  747
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  GTCCACCAGCAGCCTTTTGACCCTGTGAAACTGAGAGACTCAAACCATCC  750

seq1  T  748
      |
seq2  T  751

seq1: chr15_84605992_84606582
seq2: B6Ng01-179N17.g_69_659 (reverse)

seq1  CCCCCCCCCCCATGGCGTCTGTGCTCTCAGAATGCTGAATAACCCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCATGGCGTCTGTGCTCTCAGAATGCTGAATAACCCCAAAG  50

seq1  GGTCTCAGAGTTCTGCTGCCAGGGAGAAAGAAAGAAAGAAAAATGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGAGTTCTGCTGCCAGGGAGAAAGAAAGAAAGAAAAATGATGGC  100

seq1  TCCCTTAAGAGCCCACCATTGTGAGCCCCGAATTAACAATGACATTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAGAGCCCACCATTGTGAGCCCCGAATTAACAATGACATTAAAT  150

seq1  CAAGCCTCATGCATTATGCAGTGGGGTTTACAGGGAAATGCGTGTCTGTG  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAGCCTCATGCATTATGCAGTGGGGTTTACAGGGAAATGCGTGTCAGTG  200

seq1  AAATATATGTTTCAAATTTCCTGACTTGGAGAGGTGCCCCAAGACGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGTTTCAAATTTCCTGACTTGGAGAGGTGCCCCAAGACGGTCT  250

seq1  CCTGCCGCTCCTTTGATAACAGTTTCCCTTCACAATCGGTAATTGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGCTCCTTTGATAACAGTTTCCCTTCACAATCGGTAATTGTGGAA  300

seq1  TCCCAGCCCAGCGCTGCGTGGCCCCGTCACCTTCCCGTGTCTCAGTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCCAGCGCTGCGTGGCCCCGTCACCTTCCCGTGTCTCAGTACAA  350

seq1  TCTCCCCATCGTTCCCACAGCAAAAGAAAGTGATTATGGCAGTCACACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCATCGTTCCCACAGCAAAAGAAAGTGATTATGGCAGTCACACGT  400

seq1  AGGAAGCACACGACATGTCCCAGCTTAAAACAATGACAACAGAGCCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCACACGACATGTCCCAGCTTAAAACAATGACAACAGAGCCTGCA  450

seq1  TGAGGACTCAATCTCCCGGACACAGGGGATAGATTATCCAAGCATTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTCAATCTCCCGGACACAGGGGATAGATTATCCAAGCATTCACT  500

seq1  TTTGCGGAGATGACAGCGATTGCCAGTTGACTGCAGAGGTTCGGCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGGAGATGACAGCGATTGCCAGTTGACTGCAGAGGTTCGGCAGGCT  550

seq1  GCCCAGAACTTGTGGTTGACATTCAGAGAAAGAATGAATTC  591
      ||||||||||||||||||||  |||||||||||||||||||
seq2  GCCCAGAACTTGTGGTTGACCATCAGAGAAAGAATGAATTC  591