BAC Information

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BAC

Clone NameB6Ng01-181C10
Chromosome15 (Build37)
Map Location 101,349,999 - 101,351,131
singlet/doubletsinglet
Overlap geneKrt85
Upstream geneTcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415
Downstream geneKrt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181C10.bB6Ng01-181C10.g
ACCGA007392GA007393
length1,2131,118
definitionB6Ng01-181C10.b B6Ng01-181C10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttatgaaatcatggcctcttgcaaatgccttagatctatcatt
tctataggacaccattctaccgagtcataattgtgttccactccattaga
aggcatatgagtctgactactgaaagctgatgtgatctcataactctggg
ctcctcctcctctcactcttgcattacagttttctttccctttttcttcc
tttgggaagcccacactctattctatgtcaacaggactgagcctgtttgt
tccctgctctctggcactccttgtctcccaagcacttccacctgaaaatt
ttccagttgcacagccaactctggaagacattgacaaatgagaaaggaca
gtgaccccttttcatttcatatatatatatattcaggtccctccatttca
tttcatccacattttccaacatcatttccatccatcattctcccaacagt
ttttgaaacagaatataggatgaagaataagaaaaagtgaaaatcccttc
atcctctgccactttctctaaggcattgaaatcaactttcccgttttgcc
tagcaccatatctaggtgctacatgtagctggtgtttgttactttatagc
ctctactttttttctactcctttcctctcttttccaccctttcagcccta
taaaattgggtaggagagaaaaaaagataggatggaaaggggcaatgcaa
tcattaaacttcctgctgattaggggtgtcaaattcctagagacaagttt
gatattcaacatcaggatacttaatttcttctttttgatgttatttattc
ttttcacactcttacttaataaaccacaaccaacaacaagcaacagcaac
caaccaacacctaacaacacacccacattcatactttcttcttgacatca
tcaatctgaaatcttggtctctggattaagcagttgaactctgccatatc
ctgctttgtgatagtcacattgtccccatgtcagtttaccacaatataca
actcctcaatactgtatacatagagaaagacagaaacatatttgttgtgg
ttgttttgtttttgctggaccatgacattcaatctccaatctattgtgag
ccagtcctacctccttctctctctatgactctatctcctggtctgatgac
tgaatgacctgctgccggctctgattccctctgggggacccctcctcccg
gccctttcaaagt
gaattcagtgttggctgactatatatgtgtataaatgaacagctttctca
aatatttgaaggagggcagaaaatgccacatttgtacagctgtagacttc
caacccggaggaccactccaggtttgaaaactgctggacttagaacctta
tatggctctttcttgccccagagtgatgtgagtatcctctgggaaaaaag
actgtagggtacaggagtttgaaaagatagccacggttggcgagagggag
agataggattcttctgcaaagtttttttttgatcattgcaatgtttggtt
cctaaataaaattttggaggggaaaaatgattttaaaagatgttcaagtt
tcctgccacttgccttggattttctagcatgaacctctggagctagtggc
cagcagagggcagcaaatgccttcagttggccttcctaaagcctgaggaa
gagcagggaaggcaaaggaggtgtctggagttgcccaagatgtcaactct
ttgggaactgaagctgtccacagatttgtgtgcccacatggcattcacct
tggataaaaatgcagtagtgggtttctgtctctatttgtgagtcactaat
aataataataagaagaatgcagatgcatctattgaagcaacatgaaggct
ttcttgtgcagcacctactgagtgccaagtaaggccagctaagtgcttca
ggtgcactgtggcatgagcttgacctccacaaactcttggaggttggaaa
taggtctccagtctacccacaagacaagtggctcattagtgttcagggtc
aggcaagcacgtgcccctgtgtaggagtttaacctcttggaccttgggtt
tgcttctgttgatggaagcagaagaggggagctcctggcacaataatgga
tggaccatgtgtatcacaaccaattactaatgtggtctgtttaaggtcta
tgactctattattaatttcattttggtctccggatgtttgctctattcac
tctttttgttttcttagatccttggatattaaaaatgttcttttagggat
ggtgagatgactcatggcttgctgtaaagactgggaactcagttggatcc
caatccaagtctatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101349999_101351131
seq2: B6Ng01-181C10.g_67_1184

seq1  GAATTCAGTGTTGGCTGACTATATATGTGTATAAATGAACAGCTTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTGGCTGACTATATATGTGTATAAATGAACAGCTTTCTCA  50

seq1  AATATTTGAAGGAGGGCAGAAAATGCCACATTTGTACAGCTGTAGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGAAGGAGGGCAGAAAATGCCACATTTGTACAGCTGTAGACTTC  100

seq1  CAACCCGGAGGACCACTCCAGGTTTGAAAACTGCTGGACTTAGAACCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCGGAGGACCACTCCAGGTTTGAAAACTGCTGGACTTAGAACCTTA  150

seq1  TATGGCTCTTTCTTGCCCCAGAGTGATGTGAGTATCCTCTGGGAAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCTTTCTTGCCCCAGAGTGATGTGAGTATCCTCTGGGAAAAAAG  200

seq1  ACTGTAGGGTACAGGAGTTTGAAAAGATAGCCACGGTTGGCGAGAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGGTACAGGAGTTTGAAAAGATAGCCACGGTTGGCGAGAGGGAG  250

seq1  AGATAGGATTCTTCTGCAAAGTTTTTTTTTGATCATTGCAATGTTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGATTCTTCTGCAAAGTTTTTTTTTGATCATTGCAATGTTTGGTT  300

seq1  CCTAAATAAAATTTTGGAGGGGAAAAATGATTTTAAAAGATGTTCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATAAAATTTTGGAGGGGAAAAATGATTTTAAAAGATGTTCAAGTT  350

seq1  TCCTGCCACTTGCCTTGGATTTTCTAGCATGAACCTCTGGAGCTAGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCACTTGCCTTGGATTTTCTAGCATGAACCTCTGGAGCTAGTGGC  400

seq1  CAGCAGAGGGCAGCAAATGCCTTCAGTTGGCCTTCCTAAAGCCTGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGGGCAGCAAATGCCTTCAGTTGGCCTTCCTAAAGCCTGAGGAA  450

seq1  GAGCAGGGAAGGCAAAGGAGGTGTCTGGAGTTGCCCAAGATGTCAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGAAGGCAAAGGAGGTGTCTGGAGTTGCCCAAGATGTCAACTCT  500

seq1  TTGGGAACTGAAGCTGTCCACAGATTTGTGTGCCCACATGGCATTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACTGAAGCTGTCCACAGATTTGTGTGCCCACATGGCATTCACCT  550

seq1  TGGATAAAAATGCAGTAGTGGGTTTCTGTCTCTATTTGTGAGTCACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAAATGCAGTAGTGGGTTTCTGTCTCTATTTGTGAGTCACTAAT  600

seq1  AATAATAATAAGAAGAATGCAGATGCATCTATTGAAGCAACATGAAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAAGAAGAATGCAGATGCATCTATTGAAGCAACATGAAGGCT  650

seq1  TTCTTGTGCAGCACCTACTGAGTGCCAAGTAAGGCCAGCTAAGTGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGCAGCACCTACTGAGTGCCAAGTAAGGCCAGCTAAGTGCTTCA  700

seq1  GGTGCACTGTGGCATGAGCTTGACCTCCACAAACTCTTGGAGGTTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTGTGGCATGAGCTTGACCTCCACAAACTCTTGGAGGTTGGAAA  750

seq1  TAGGTCTCCAGTCTACCCACAAGACAAGTGGCTCATTAGTGTTCAGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCCAGTCTACCCACAAGACAAGTGGCTCATTAGTGTTCAGGGTC  800

seq1  AGGCAAGCACGTGCCCCTGTGTAGGAGTTTAACCTCTTGGACCTTGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCACGTGCCCCTGTGTAGGAGTTTAACCTCTTGGACCTTGGGTT  850

seq1  TGCTTCTGTTGATGGAAGCAGAAGAGGGGAGCTCCTGGCACAATAATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTTGATGGAAGCAGAAGAGGGGAGCTCCTGGCACAATAATGGA  900

seq1  TGGACCATGTGTATCACAACCAATTACTAATGTGGGTCTGTTTAA-GTCT  949
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TGGACCATGTGTATCACAACCAATTACTAATGT-GGTCTGTTTAAGGTCT  949

seq1  ATGACTCTATTTATTTATTTTCATTTTGGTCTTCCGGATGTTTGCCTTCT  999
      |||||||||||   ||| ||||||||||||| |||||||||||||  |||
seq2  ATGACTCTATT--ATTAATTTCATTTTGGTC-TCCGGATGTTTGC--TCT  994

seq1  ATCACCTCTTTTTTGTTTTCTTTAGATTCCTTGAATATTTAAAAATGTTC  1049
      ||   ||| ||||||||||| ||||| |||||| ||| ||||||||||||
seq2  ATTCACTC-TTTTTGTTTTC-TTAGA-TCCTTGGATA-TTAAAAATGTTC  1040

seq1  TTTTAGGGGTTGGTGAGATGACTCAGTGGCTTGCTGTAAAGACTGGTGAC  1099
      ||||| ||| ||||||||||||||| |||||||||||||||||||| || 
seq2  TTTTA-GGGATGGTGAGATGACTCA-TGGCTTGCTGTAAAGACTGG-GAA  1087

seq1  CTCAGTTTGATCCCCAGAACCCAAGTCTATGTAA  1133
      ||||||| ||||||   || ||||||||||||||
seq2  CTCAGTTGGATCCC---AATCCAAGTCTATGTAA  1118