BAC Information

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BAC

Clone NameB6Ng01-181P10
Chromosome15 (Build37)
Map Location 44,473,540 - 44,628,176
singlet/doubletdoublet
Overlap gene5730410E15Rik
Upstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9
Downstream geneA930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181P10.bB6Ng01-181P10.g
ACCGA007984GA007985
length9091,084
definitionB6Ng01-181P10.b B6Ng01-181P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,473,540 - 44,474,450)(44,627,128 - 44,628,176)
sequence
gaattctttagaattttaataattattctctcccaattacttattttact
tattatgaggatattatatgatgtgtatggatgtaggattcataaagagt
agttttcttcagtgaggtcagtttgctgctttcaataattgtaaagtact
gaggtctgctttagtcatgctttttgagtatgagaggtatttttttatgt
ttgtctttttagcttttgagaaataaaaaccaattagaaattatagctta
taagattaggaagaaatagatttttttctttatcaactttgaaatacttt
tacctgtatttctatgttaaattggtgatgtgtgatcccacaaaattcat
ggagtcaaatacatataatacttcatggtagcaagcttctctttagcttc
taaatttagtttgagaaattgtttttagttcttataattttataaggcat
taataattggttttatatttgttttttcaagacagggtttctctgtagag
ccctgactgttctgaaacactctgtagaccagcctggcctcagactcaga
gatctgcctgctttctggcatgacataatgtgttttagatgcttattact
aaagcagaggaaccatggtaggtctaaagagtttgtgaagatttacgcat
attctgatcctgtgtttgagctaaacaaagacaatgtaaagtttaattca
cgtgtttaatagaaatgtttaacttccaaccatttcttaataagtttagc
taaaatatcctttcttggccctttgtgatatttgactagatattttcaac
tgatgatttgaaaacattttcacgtggcttcctcagtttggtgtgtacta
acttctggccacacagtgacggatttgggatgaagattggttgctgacac
taagaggac

gaattccacatattttcacctctaggtagaatgctacaggaattcaatgg
ctactgagaggaagtttcccccacagatgacctcccacatagattctcca
atctcagacttagacatatatatacataaaaacaccaaattgactcagta
gggtatatatacatgtgtacatatatacatgtgtgtatgtgtgcatatat
gtacacatacatatatatcaacaataacatcatcatcatcatcataacga
gatcatgaatttgggagagagagaaaggacaggagcggtcagctactgta
ctcatatatgaaatgctcaaaaattaaagttaagtaaagatttagcttcc
aggggctagagagatggctcagcaattcagagcaccgattgctcttcaaa
aggttctgagctggattcccagcaatcacatggtggctctgaaccatctg
taatgagatctgatgccctcttctggtgtgtctgaagacagctacagtgt
acttatatataataaatacatctttttaaaaaaaagatttagcttcaagt
caggcaacgggtatgttatatcctcaatttcaaaagaccttttaataacg
actcagcagaacttaggaaattagtctgaacaggttagagggtgcgccag
agaaccggacagcttctgggacgggcagaagcacagagcctctgaggcag
cacctttggcgggccgcagacagccggccaccgtccggaccagaggacag
gtgtccgcctggcttgggaggcggcctcagcctcagcagcagcggacgcc
atctgggttccgggactccgcgggacctaggaaattagtctgaacaggtt
agagggtgcgccagagaaccggacagcttctgggacaggcggaagcacag
agccgctgagcagcaccctttggcgggccgcagacagccggccaccttcc
aaaccaggaggacaggtgtccgcttggctcgggaggcagccttcagcctc
aggagcagcgtcgcatcttgtcaggaactcctgggaactaaggatttagt
ctgcccaggtgagagttctgcaccacgagctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44473540_44474450
seq2: B6Ng01-181P10.b_45_953

seq1  GAATTCTTTAGAATTTTAATAATTATTCTCTCCCAATTACTTATTTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAATTTTAATAATTATTCTCTCCCAATTACTTATTTTACT  50

seq1  TATTATGAGGATATTATATGATGTGTATGGATGTAGGATTCATAAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGAGGATATTATATGATGTGTATGGATGTAGGATTCATAAAGAGT  100

seq1  AGTTTTCTTCAGTGAGGTCAGTTTGCTGCTTTCAATAATTGTAAAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTCAGTGAGGTCAGTTTGCTGCTTTCAATAATTGTAAAGTACT  150

seq1  GAGGTCTGCTTTAGTCATGCTTTTTGAGTATGAGAGGTATTTTTTTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGCTTTAGTCATGCTTTTTGAGTATGAGAGGTATTTTTTTATGT  200

seq1  TTGTCTTTTTAGCTTTTGAGAAATAAAAACCAATTAGAAATTATAGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTTTAGCTTTTGAGAAATAAAAACCAATTAGAAATTATAGCTTA  250

seq1  TAAGATTAGGAAGAAATAGATTTTTTTCTTTATCAACTTTGAAATACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTAGGAAGAAATAGATTTTTTTCTTTATCAACTTTGAAATACTTT  300

seq1  TACCTGTATTTCTATGTTAAATTGGTGATGTGTGATCCCACAAAATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTATTTCTATGTTAAATTGGTGATGTGTGATCCCACAAAATTCAT  350

seq1  GGAGTCAAATACATATAATACTTCATGGTAGCAAGCTTCTCTTTAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAATACATATAATACTTCATGGTAGCAAGCTTCTCTTTAGCTTC  400

seq1  TAAATTTAGTTTGAGAAATTGTTTTTAGTTCTTATAATTTTATAAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAGTTTGAGAAATTGTTTTTAGTTCTTATAATTTTATAAGGCAT  450

seq1  TAATAATTGGTTTTATATTTGTTTTTTCAAGACAGGGTTTCTCTGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTGGTTTTATATTTGTTTTTTCAAGACAGGGTTTCTCTGTAGAG  500

seq1  CCCTGACTGTTCTGAAACACTCTGTAGACCAGCCTGGCCTCAGACTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTGTTCTGAAACACTCTGTAGACCAGCCTGGCCTCAGACTCAGA  550

seq1  GATCTGCCTGCTTTCTGGCATGACATAATGTGTTTTAGATGCTTATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTGCTTTCTGGCATGACATAATGTGTTTTAGATGCTTATTACT  600

seq1  AAAGCAGAGGAACCATGGTAGGTCTAAAGAGTTTGTGAAGATTTACGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGGAACCATGGTAGGTCTAAAGAGTTTGTGAAGATTTACGCAT  650

seq1  ATTCTGATCCTGTGTTTGAGCTAAACAAAGACAATGTAAAGTTTAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATCCTGTGTTTGAGCTAAACAAAGACAATGTAAAGTTTAATTCA  700

seq1  CGTGTTTAATAGAAATGTTTAACTTCCAACCATTTCTTAATAAGTTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTAATAGAAATGTTTAACTTCCAACCATTTCTTAATAAGTTTAGC  750

seq1  TAAAATATCCTTTCTTGGCCCTTTGTGATATTTGACTAGATATTTTCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCCTTTCTTGGCCCTTTGTGATATTTGACTAGATATTTTCAAC  800

seq1  TGATGATTTGAAAACATTTTCACGTGGCTTCCTCAGTTTTGGTGTGTACT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGATGATTTGAAAACATTTTCACGTGGCTTCCTCAG-TTTGGTGTGTACT  849

seq1  AACTTCTGGCCACAACAGTGACGGATTTGGGATGAAGATTGGTTGCTGAC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGGCCAC-ACAGTGACGGATTTGGGATGAAGATTGGTTGCTGAC  898

seq1  ACTAAGAGGAC  911
      |||||||||||
seq2  ACTAAGAGGAC  909


seq1: chr15_44627128_44628176
seq2: B6Ng01-181P10.g_103_1147 (reverse)

seq1  GTCAGCTTCTGTGGTGCAG-ACTCTCACCTGTGCAGACTAAATTCCTAAG  49
      |||||||   ||||||||| ||||||||||| |||||||||| |||| ||
seq2  GTCAGCT--CGTGGTGCAGAACTCTCACCTGGGCAGACTAAA-TCCTTAG  47

seq1  TTCCAGGGAGTCCTGGAACCAAGATGGCGACCGCTGCTCCTGAGGCTG-A  98
      ||||  ||||| |  ||  |||||| |||| ||||||||||||||||| |
seq2  TTCCCAGGAGTTCCTGA--CAAGAT-GCGA-CGCTGCTCCTGAGGCTGAA  93

seq1  GGCTGCCTCCCGAGCCAGGCGGACACCTGTCCT-CTGGTCTGGAAGGTGG  147
      ||||||||||||||||| ||||||||||||||| ||||| ||||||||||
seq2  GGCTGCCTCCCGAGCCAAGCGGACACCTGTCCTCCTGGTTTGGAAGGTGG  143

seq1  CCGGCTGTCTGCGGCCCGCC-AAGGGTGCTGCCTCAGCGGCTCTGTGCTT  196
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CCGGCTGTCTGCGGCCCGCCAAAGGGTGCTG-CTCAGCGGCTCTGTGCTT  192

seq1  CCGCCTGTCCCAGAAGCTGTCCGGTTCTCTGGCGCACCCTCTAACCTGTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGTCCCAGAAGCTGTCCGGTTCTCTGGCGCACCCTCTAACCTGTT  242

seq1  CAGACTAATTTCCTAGGTCCCGCGGAGTCCCGGAACCCAGATGGCGTCCG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAATTTCCTAGGTCCCGCGGAGTCCCGGAACCCAGATGGCGTCCG  292

seq1  CTGCTGCTGAGGCTGAGGCCGCCTCCCAAGCCAGGCGGACACCTGTCCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGAGGCTGAGGCCGCCTCCCAAGCCAGGCGGACACCTGTCCTC  342

seq1  TGGTCCGGACGGTGGCCGGCTGTCTGCGGCCCGCCAAAGGTGCTGCCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCGGACGGTGGCCGGCTGTCTGCGGCCCGCCAAAGGTGCTGCCTCA  392

seq1  GAGGCTCTGTGCTTCTGCCCGTCCCAGAAGCTGTCCGGTTCTCTGGCGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTGTGCTTCTGCCCGTCCCAGAAGCTGTCCGGTTCTCTGGCGCA  442

seq1  CCCTCTAACCTGTTCAGACTAATTTCCTAAGTTCTGCTGAGTCGTTATTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAACCTGTTCAGACTAATTTCCTAAGTTCTGCTGAGTCGTTATTA  492

seq1  AAAGGTCTTTTGAAATTGAGGATATAACATACCCGTTGCCTGACTTGAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTTTTGAAATTGAGGATATAACATACCCGTTGCCTGACTTGAAG  542

seq1  CTAAATCTTTTTTTTAAAAAGATGTATTTATTATATATAAGTACACTGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTTTTTTTTAAAAAGATGTATTTATTATATATAAGTACACTGTA  592

seq1  GCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGT  642

seq1  TCAGAGCCACCATGTGATTGCTGGGAATCCAGCTCAGAACCTTTTGAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCACCATGTGATTGCTGGGAATCCAGCTCAGAACCTTTTGAAGA  692

seq1  GCAATCGGTGCTCTGAATTGCTGAGCCATCTCTCTAGCCCCTGGAAGCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCGGTGCTCTGAATTGCTGAGCCATCTCTCTAGCCCCTGGAAGCTA  742

seq1  AATCTTTACTTAACTTTAATTTTTGAGCATTTCATATATGAGTACAGTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTACTTAACTTTAATTTTTGAGCATTTCATATATGAGTACAGTAG  792

seq1  CTGACCGCTCCTGTCCTTTCTCTCTCTCCCAAATTCATGATCTCGTTATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCGCTCCTGTCCTTTCTCTCTCTCCCAAATTCATGATCTCGTTATG  842

seq1  ATGATGATGATGATGTTATTGTTGATATATATGTATGTGTACATATATGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGATGATGTTATTGTTGATATATATGTATGTGTACATATATGC  892

seq1  ACACATACACACATGTATATATGTACACATGTATATATACCCTACTGAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACACACATGTATATATGTACACATGTATATATACCCTACTGAGT  942

seq1  CAATTTGGTGTTTTTATGTATATATATGTCTAAGTCTGAGATTGGAGAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGTGTTTTTATGTATATATATGTCTAAGTCTGAGATTGGAGAAT  992

seq1  CTATGTGGGAGGTCATCTGTGGGGGAAACTTCCTCTCAGTAGCCATTGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGGAGGTCATCTGTGGGGGAAACTTCCTCTCAGTAGCCATTGAA  1042

seq1  TTC  1049
      |||
seq2  TTC  1045


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