BAC Information

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BAC

Clone NameB6Ng01-186D02
Chromosome15 (Build37)
Map Location 5,894,748 - 5,895,864
singlet/doubletsinglet
Overlap geneLOC100039358
Upstream gene4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319
Downstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186D02.bB6Ng01-186D02.g
ACCGA011103GA011104
length1,1231,200
definitionB6Ng01-186D02.b B6Ng01-186D02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagttcttcagccttcaggctggaaaaaataacttgttgtgtaa
gctttggctttcttgtctgtacagagaacaaaaagttagccagggcccag
ggaattcttaagaagacagtgaatgtaaacttatcagtgtgactctttgt
gcctcagaacacgtgggttagttgttgaaatgtattactatccaatgagt
gaattatggctttagacaggtgaacttggattacctagactcactgggac
ctattgcttttcatgtgttaaagactatagaaaggcagagaagatagaaa
aaagaacattagtagcaccttgggacaataagagaagaaaatgtatgaat
agtatctggcaaaaactccagccatgaatatgtatttttgcttcacctag
aagtataactcttcattaagttaagaaaatacttgacattactttaacta
tatagttttaatatcaaagataagaagaagagagaaaacattctcgctaa
ttactgcaatggagaatttagacattcatttggccttgttagagcttaaa
atatttgactttctagacttgaaatatgtaaggttttgctctcacatatt
taatgaacttacagagtcaattaggaaataaactatcagaacataagcta
tcaaggactcaaggaaaatttccagctcagtagaagtgaaacgtagttgg
tagattagaaaaatatacatgaaatgtcaactagcgattgaataacccat
tcagtgacacttcacagttcctggaacttttcttatgtggtgagataaag
ttgttcatttacaaaacacaaaccattaaaaagtaatcaacttagatgcc
atagattaagtacttaaacataaatattttgttgcttggatacatcctca
gattttttttcacacagtatctatctgtggctagttagcaatcttttttg
tatttatttatctcatataggtatatgtgtgtatgcatgtgtatgtgagt
tgacacacatgaagagcacatgtgtatatggttagtggagagcacactct
gggactagtcttctctttattcatgtaagtatgagggaatcaaaccttac
atggaacaagaaacccccaccca
gaattctttgtttagctctgtgccccatttttaaatggggttatttggtt
ttctggagtctatcttcttgagatttctctttctgagaaagaaattaggg
aaacaacacctttcacagtagtcacaaataatataaaataccttggtgtg
actctaactaaggaagtgaaagatctgtatgataagaacttcaactctct
gaagaaagaaatcaaagaagatctcagaagatggaaagatctcccaagct
catggattggcaggattaatatagtaaaaatggctatcttgccaaaagca
atctacagattcaatgcaatccccatcaaaattccaactcaattcttcaa
cgaattagaaagagcaattggcaaattcatttggaataacaaaaaaccta
ggatagcaaaaactcttctcaatgataaaagaacctctggtggaatcacc
atgcctgacctaaagctgttctacagagcaattgtgataaaaactgcatg
gtactggtatagcgacagacaagtagaccaatggaatagaattgaagacc
cagacatgaatctacacacctatggtcacttgatcttcgacaagggagct
aaaaccatccagtggaaaaaagacagcattttcaagaaagtgtcgtggca
caactggcggttatcatgtagaagaatctgaattgattcattcttatctc
cttgtacaaagctcaagcctaagtggatcaaggaacgccacataaaacta
gagacactgaaacttatagaggagaaagtgggggaaagcctcgaagatat
ggccatagggggatgattaagtttctgaatagaacaacaatgggcttgtg
ctgtaagatcgagaattttacaaatgggcacctcataaattgcaaagcat
cttatttagcaaaagaaaactgtcaataagacaaaaggccacccacagaa
ttgggaaaggatcttttaccaatcctaaatcaggatagggggactaatta
tccaatatattgtaggtcttcttcttaccccacctaaaatatatatacct
cctgagtttcatttatcctcagttctctattaagatgttatcttttaaat
gtcatgaatctctcaagtagaatattactggccgtgataatattgcactc
actgttctgaaccgactgaccgatttgcagcaatttacaccatggtgctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5894748_5895864
seq2: B6Ng01-186D02.b_45_1167

seq1  GAATTCCAGTTCTTCAGCCTTCAGGCTGGAAAAAATAACTTGTTGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCTTCAGCCTTCAGGCTGGAAAAAATAACTTGTTGTGTAA  50

seq1  GCTTTGGCTTTCTTGTCTGTACAGAGAACAAAAAGTTAGCCAGGGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCTTTCTTGTCTGTACAGAGAACAAAAAGTTAGCCAGGGCCCAG  100

seq1  GGAATTCTTAAGAAGACAGTGAATGTAAACTTATCAGTGTGACTCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTTAAGAAGACAGTGAATGTAAACTTATCAGTGTGACTCTTTGT  150

seq1  GCCTCAGAACACGTGGGTTAGTTGTTGAAATGTATTACTATCCAATGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAACACGTGGGTTAGTTGTTGAAATGTATTACTATCCAATGAGT  200

seq1  GAATTATGGCTTTAGACAGGTGAACTTGGATTACCTAGACTCACTGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGGCTTTAGACAGGTGAACTTGGATTACCTAGACTCACTGGGAC  250

seq1  CTATTGCTTTTCATGTGTTAAAGACTATAGAAAGGCAGAGAAGATAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTTTTCATGTGTTAAAGACTATAGAAAGGCAGAGAAGATAGAAA  300

seq1  AAAGAACATTAGTAGCACCTTGGGACAATAAGAGAAGAAAATGTATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTAGTAGCACCTTGGGACAATAAGAGAAGAAAATGTATGAAT  350

seq1  AGTATCTGGCAAAAACTCCAGCCATGAATATGTATTTTTGCTTCACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGGCAAAAACTCCAGCCATGAATATGTATTTTTGCTTCACCTAG  400

seq1  AAGTATAACTCTTCATTAAGTTAAGAAAATACTTGACATTACTTTAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAACTCTTCATTAAGTTAAGAAAATACTTGACATTACTTTAACTA  450

seq1  TATAGTTTTAATATCAAAGATAAGAAGAAGAGAGAAAACATTCTCGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTTAATATCAAAGATAAGAAGAAGAGAGAAAACATTCTCGCTAA  500

seq1  TTACTGCAATGGAGAATTTAGACATTCATTTGGCCTTGTTAGAGCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCAATGGAGAATTTAGACATTCATTTGGCCTTGTTAGAGCTTAAA  550

seq1  ATATTTGACTTTCTAGACTTGAAATATGTAAGGTTTTGCTCTCACATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGACTTTCTAGACTTGAAATATGTAAGGTTTTGCTCTCACATATT  600

seq1  TAATGAACTTACAGAGTCAATTAGGAAATAAACTATCAGAACATAAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACTTACAGAGTCAATTAGGAAATAAACTATCAGAACATAAGCTA  650

seq1  TCAAGGACTCAAGGAAAATTTCCAGCTCAGTAGAAGTGAAACGTAGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACTCAAGGAAAATTTCCAGCTCAGTAGAAGTGAAACGTAGTTGG  700

seq1  TAGATTAGAAAAATATACATGAAATGTCAACTAGCGATTGAATAACCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGAAAAATATACATGAAATGTCAACTAGCGATTGAATAACCCAT  750

seq1  TCAGTGACACTTCACAGTTCCTGGAACTTTTCTTATGTGGTGAGATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACACTTCACAGTTCCTGGAACTTTTCTTATGTGGTGAGATAAAG  800

seq1  TTGTTCATTTACAAAACACAAACCATTAAAAAGTAATCAACTTAGATGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTTACAAAACACAAACCATTAAAAAGTAATCAACTTAGATGCC  850

seq1  ATAGATTAAGTACTTAAACATAAATATTTTGTTGCTTGGATACATCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAAGTACTTAAACATAAATATTTTGTTGCTTGGATACATCCTCA  900

seq1  GA-TTTTTTTCACACAGTATCTATCTGTGGCTAGTTAGCAATC-TTTTTG  948
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATTTTTTTTCACACAGTATCTATCTGTGGCTAGTTAGCAATCTTTTTTG  950

seq1  TATTTATTTATCTCATATAGGTATATGTGTGTATGCATGTGTATGTGAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATCTCATATAGGTATATGTGTGTATGCATGTGTATGTGAGT  1000

seq1  TGACACACATGAAAGAGCACATGTGTATATGG-TAGT-GAGAGCACAACT  1046
      ||||||||||| |||||||||||||||||||| |||| |||||||||   
seq2  TGACACACATG-AAGAGCACATGTGTATATGGTTAGTGGAGAGCACA--C  1047

seq1  TCTGGAACTAGTTCTCTCTTTA-TCATGTAAGTTATGAGGG-ATCAAA-C  1093
      ||||| ||||||  |||||||| ||||||||| |||||||| |||||| |
seq2  TCTGGGACTAGTCTTCTCTTTATTCATGTAAG-TATGAGGGAATCAAACC  1096

seq1  TTACAT-GAAC-AGAAA-CCCCACCCA  1117
      |||||| |||| ||||| |||||||||
seq2  TTACATGGAACAAGAAACCCCCACCCA  1123