BAC Information

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BAC

Clone NameB6Ng01-187M21
Chromosome15 (Build37)
Map Location 101,830,713 - 101,997,393
singlet/doubletdoublet
Overlap geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78
Downstream geneCsad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187M21.bB6Ng01-187M21.g
ACCGA012284GA012285
length5261,050
definitionB6Ng01-187M21.b B6Ng01-187M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,830,713 - 101,831,238)(101,996,345 - 101,997,393)
sequence
gaattcctaatctaaatcccaaagccacgcctcctgtgtctgcatatagg
tgtctcctcctgtgtctgcatataggtgtctcctcctgtgtctacatata
ggtgtctcctcctgtgtctgcatataggtgtctcctgtgtctcagaggcc
caagacatcggattccccggagctgcagttacaggcagttgtgagccatt
tgatatggctaatagaaactgaactcatgtcctctggaagaaaggcaagt
cctcttaacctctgtgccatctccgcagccctacccccagaccctcacct
tcttgatgaggacaaattcattctccatctctgtacgcttgttgatctca
tcctcatacctggtaagaaaagaccaggagtcagcgggtgaaggtgaagg
caaaggctgtcctgggtctgctgctgccagggatggagcccaaggctttg
tacatgcgaaatgtgtgcacaaagagagacaatcctaccctaccttgctc
tctgatgggaacggggggtggggggg
gaattcactgtccagtttctagacagaacaagttactgataagggggaat
ggtcttagcttggtagagagcagtacaagccagaaaccaaaaagtagctt
tgcacacagcagcaaattcattcacctgtcagggtggaagaaacatgtct
gaggccaagccttgagtagctgagtttaatccctgggatccacaaaatag
gaaagacttgattcttatagattgtcctctgacttacagatacaggcatg
cggatgaattcacacaggtgaatctctgtgagtcaaggccagcctagtct
acagagtgagttccaggatagccaggtccatgtagaaagaccctgtctca
aaatccaagcaaaaaacaaaacaaaaaaataaaaacccttcgaggcaatc
ttaagctacacagtgaatataagaccagctttagctatgtgaaagacccc
gttacacacacacacacacatacacataaacaccaaccttaaacacaaat
agaagcctgtcatctactgtactggaatgaaaatgaaaagatcagggtca
tcctttaaaaatggctatagagctggagacataactccggcgctcttaca
aaggacctgagttcagttcctggcactcatgttcacaaccacaggtgact
ccagctccaggtgatcccaactctcttgtggtttctgcaaacacttccga
atctgaatgcacatacagatgcacacagcccttgtaatctggagcttgct
ctgtagaccaggctggctttgaactcatagaaccccaccagcctttgact
cctgactttttttttttaaatggggactgtgatggtgggattgaacccag
ggcctagtacttgccaggtaaggaatctatcattgaactacatcccatcc
ttaacacacacacacacacacacacacacacacacacgtatatgtatatg
atgtatatattactgtgctgttgcagaggtcagagacatctccaggagtt
ggttctctgctgcaccttttttttggatctcggttgtcagccttacatgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101830713_101831238
seq2: B6Ng01-187M21.b_53_578

seq1  GAATTCCTAATCTAAATCCCAAAGCCACGCCTCCTGTGTCTGCATATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATCTAAATCCCAAAGCCACGCCTCCTGTGTCTGCATATAGG  50

seq1  TGTCTCCTCCTGTGTCTGCATATAGGTGTCTCCTCCTGTGTCTACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCCTGTGTCTGCATATAGGTGTCTCCTCCTGTGTCTACATATA  100

seq1  GGTGTCTCCTCCTGTGTCTGCATATAGGTGTCTCCTGTGTCTCAGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCCTCCTGTGTCTGCATATAGGTGTCTCCTGTGTCTCAGAGGCC  150

seq1  CAAGACATCGGATTCCCCGGAGCTGCAGTTACAGGCAGTTGTGAGCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATCGGATTCCCCGGAGCTGCAGTTACAGGCAGTTGTGAGCCATT  200

seq1  TGATATGGCTAATAGAAACTGAACTCATGTCCTCTGGAAGAAAGGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGCTAATAGAAACTGAACTCATGTCCTCTGGAAGAAAGGCAAGT  250

seq1  CCTCTTAACCTCTGTGCCATCTCCGCAGCCCTACCCCCAGACCCTCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAACCTCTGTGCCATCTCCGCAGCCCTACCCCCAGACCCTCACCT  300

seq1  TCTTGATGAGGACAAATTCATTCTCCATCTCTGTACGCTTGTTGATCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGAGGACAAATTCATTCTCCATCTCTGTACGCTTGTTGATCTCA  350

seq1  TCCTCATACCTGGTAAGAAAAGACCAGGAGTCAGCGGGTGAAGGTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATACCTGGTAAGAAAAGACCAGGAGTCAGCGGGTGAAGGTGAAGG  400

seq1  CAAAGGCTGTCCTGGGTCTGCTGCTGCCAGGGATGGAGCCCAAGGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGTCCTGGGTCTGCTGCTGCCAGGGATGGAGCCCAAGGCTTTG  450

seq1  TACATGCGAAATGTGTGCACAAAGAGAGACAATCCTACCCTACCTTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCGAAATGTGTGCACAAAGAGAGACAATCCTACCCTACCTTGCTC  500

seq1  TCTGATGGGAACGGGGGGTGGGGGGG  526
      ||||||||||||||||||||||||||
seq2  TCTGATGGGAACGGGGGGTGGGGGGG  526

seq1: chr15_101996345_101997393
seq2: B6Ng01-187M21.g_69_1118 (reverse)

seq1  GCATGTAAGGCTGACAACCCGAGATC--AAAAAAAGGTGGCAGCAGAGAA  48
      ||||||||||||||||| ||||||||  |||||||||| |||||||||||
seq2  GCATGTAAGGCTGACAA-CCGAGATCCAAAAAAAAGGT-GCAGCAGAGAA  48

seq1  CCAACT-CTGGAGATGTCTTCTGACCTCTGC-ACAGCACAGTAATATATA  96
      |||||| ||||||||||| |||||||||||| ||||||||||||||||||
seq2  CCAACTCCTGGAGATGTC-TCTGACCTCTGCAACAGCACAGTAATATATA  97

seq1  CATCATATACATATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATACATATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  147

seq1  TAAGGATGGGGATGTAGTTCAATGATAGATTCCTTACCTGGCAAGTACTA  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAT-GGGATGTAGTTCAATGATAGATTCCTTACCTGGCAAGTACTA  196

seq1  GGCCCTGGGTTCAATCCCACCATCACAGTCCCCATTT-AAAAAAAAAAGT  245
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCCCTGGGTTCAATCCCACCATCACAGTCCCCATTTAAAAAAAAAAAGT  246

seq1  CAGGAGTCAAAGGCTGGTGGGGTTCTATGAGTTCAAAGCCAGCCTGGTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCAAAGGCTGGTGGGGTTCTATGAGTTCAAAGCCAGCCTGGTCT  296

seq1  ACAGAGCAAGCTCCAGATTACAAGGGCTGTGTGCATCTGTATGTGCATTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAAGCTCCAGATTACAAGGGCTGTGTGCATCTGTATGTGCATTC  346

seq1  AGATTCGGAAGTGTTTGCAGAAACCACAAGAGAGTTGGGATCACCTGGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCGGAAGTGTTTGCAGAAACCACAAGAGAGTTGGGATCACCTGGAG  396

seq1  CTGGAGTCACCTGTGGTTGTGAACATGAGTGCCAGGAACTGAACTCAGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCACCTGTGGTTGTGAACATGAGTGCCAGGAACTGAACTCAGGT  446

seq1  CCTTTGTAAGAGCGCCGGAGTTATGTCTCCAGCTCTATAGCCATTTTTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTAAGAGCGCCGGAGTTATGTCTCCAGCTCTATAGCCATTTTTAA  496

seq1  AGGATGACCCTGATCTTTTCATTTTCATTCCAGTACAGTAGATGACAGGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACCCTGATCTTTTCATTTTCATTCCAGTACAGTAGATGACAGGC  546

seq1  TTCTATTTGTGTTTAAGGTTGGTGTTTATGTGTATGTGTGTGTGTGTGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTGTGTTTAAGGTTGGTGTTTATGTGTATGTGTGTGTGTGTGTG  596

seq1  TAACGGGGTCTTTCACATAGCTAAAGCTGGTCTTATATTCACTGTGTAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGGGTCTTTCACATAGCTAAAGCTGGTCTTATATTCACTGTGTAGC  646

seq1  TTAAGATTGCCTCGAAGGGTTTTTATTTTTTTGTTTTGTTTTTTGCTTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTGCCTCGAAGGGTTTTTATTTTTTTGTTTTGTTTTTTGCTTGG  696

seq1  ATTTTGAGACAGGGTCTTTCTACATGGACCTGGCTATCCTGGAACTCACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGACAGGGTCTTTCTACATGGACCTGGCTATCCTGGAACTCACT  746

seq1  CTGTAGACTAGGCTGGCCTTGACTCACAGAGATTCACCTGTGTGAATTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACTAGGCTGGCCTTGACTCACAGAGATTCACCTGTGTGAATTCA  796

seq1  TCCGCATGCCTGTATCTGTAAGTCAGAGGACAATCTATAAGAATCAAGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCATGCCTGTATCTGTAAGTCAGAGGACAATCTATAAGAATCAAGTC  846

seq1  TTTCCTATTTTGTGGATCCCAGGGATTAAACTCAGCTACTCAAGGCTTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTTTGTGGATCCCAGGGATTAAACTCAGCTACTCAAGGCTTGG  896

seq1  CCTCAGACATGTTTCTTCCACCCTGACAGGTGAATGAATTTGCTGCTGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACATGTTTCTTCCACCCTGACAGGTGAATGAATTTGCTGCTGTG  946

seq1  TGCAAAGCTACTTTTTGGTTTCTGGCTTGTACTGCTCTCTACCAAGCTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCTACTTTTTGGTTTCTGGCTTGTACTGCTCTCTACCAAGCTAA  996

seq1  GACCATTCCCCCTTATCAGTAACTTGTTCTGTCTAGAAACTGGACAGTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTCCCCCTTATCAGTAACTTGTTCTGTCTAGAAACTGGACAGTGA  1046

seq1  ATTC  1049
      ||||
seq2  ATTC  1050