BAC Information

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BAC

Clone NameB6Ng01-187O05
Chromosome15 (Build37)
Map Location 40,586,878 - 40,722,889
singlet/doubletdoublet
Overlap geneZfpm2
Upstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872, Ppia-ps25
Downstream geneOxr1, Abra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187O05.bB6Ng01-187O05.g
ACCGA012340GA012341
length1,1801,085
definitionB6Ng01-187O05.b B6Ng01-187O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,721,681 - 40,722,889)(40,586,878 - 40,587,982)
sequence
gaattcagtaaaagtaaaaaatttaaactcaacatttaacttaaaacctt
aaggatagtgagatgaatcagcaggagaaggtacttatagatatgtctca
tggccagagctcattccactggagccacatggctgagaaaacaaagactc
caaaattgtcctcccatctcctgacaagtgcttcattgcacatgtgcaca
cacaataaataaagtatactgtgaaaagtatacggacatacaacgtttga
aaagtgaaactttaacctccaaagcagaattggccaattattgttgtata
caaatttctaaacatacttgattaaaatctatgttgtttttatcttataa
gtgtactgaagatgtttgcctctggaagatcatgccttatctccacagtt
ctttgtaggagtggtgtggacagagtcacaaacacatccccctttggata
agctttatgtgataacaaagacagtccatactagtagacagatacagctt
aagtatactcattattcaggccaccttgggatttactagtggtcagtcag
attaaaagcagagcctaatgtgttcaaagatttagagggaattattctca
taataatttcaattttgaaacctaacggaaggactacagaacacttttct
attttctcacaggtaccattttccaattgcttaacatatactaagttaat
accactgctgactcctcacgactcagagagacatctgttgtcaccacgca
gaagtcaagtaaattatcattgctaaactaactgttttaaaatatgtaaa
attgaaatcctttcaaaatcaagtagaaatacgtgcaaatacattctagt
tatataaagggtacaacacagttttatccaccttttcatataaacacccc
tcaaaagatctcatctttactttttgctttaaaaatctaccgtttttttt
taaatctacattctttaatttaagtcatgagacacagagtgtactttttt
ttttcatttttattagtatttaactcatttacatttcatgctaataccaa
agtccccatatcacacccactcctgcccacccactccccttttgccctgg
tgtccctgtactggggcatataaagttgcagtccatgctctctttccaga
atgcgactagcacatacttttgatattatg

gaattccctctgaagtcaggagaaactgtagtgaaaggaaggcaatgcta
atggatactgtaccctcttgatatacaagggccgcatctctctctgtttc
tctgactctgtctcagtctctgcctctctctgtttctctgtctctctctc
tctctgtctctctctgtctctctatctctccctctctcatccttcccctt
tctctcacttcaatttgtgttgtgtaaatacaattggaagagaaattatt
cccactagaaaagtagaacttaatctctatgtagaagactacactgcctc
agtggtacaagcttatgattcctgtgtatttgaagaaggaagaggtaagc
cgttacagtagtagaagttaaggcttaagcaaatcagtattgtaactgga
aagggaggtatgaaatgttctccttaacaataatatttcactaaaacatg
ggattttttgtacacaattttgatcatttgtaaacaactctaaacttgtc
agtctatatcagaagtgaataagattgtttgaagttttgttgtctgaaga
tattttcataattctattctagcaatgatctagtcattttaatggtttcc
atagataaatttttagatataagctgtatttccttaataaaaaatattag
gtaatgatctcataccacaaatatatgagtagagtatctcaatttttaag
catgatatatttacacatgcttagggaagaataagaagtgtacttataaa
gatagtgtatcttcattcaaattttagcaattgatttttcataaaagtca
ttctatgctattctaagtaactatgtaattttttttgaagagtaagagaa
aaagctttgttctttaagtatctatgaaaatgctgctaattgtaaccaaa
ggttctacttttgtgatagcccataccatgtaggaattttctatggttag
atgacattttacttattgtagtgtcatttcactgttcatcagtttcttgc
taaagcagattttgtgcaatctgaggatgtcagtagtattaggctgcaag
ttttttctggattccatatgcatggctcaggttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40721681_40722889
seq2: B6Ng01-187O05.b_43_1222 (reverse)

seq1  CATATATATCAAAAG-ATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCC  49
      |||| |||||||||| |||  |||||||  |||  ||||||||||||   
seq2  CATA-ATATCAAAAGTATGTGCTAGTCG--CAT-TCTGGAAAGAGAG---  43

seq1  CATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCC  99
      || ||||| ||| ||||||||||||||||||||||||  |||||||||| 
seq2  CA-TGGAC-TGC-AACTTTATATGCCCCAGTACAGGG--ACACCAGGGC-  87

seq1  AAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGG  149
        ||| ||||||||||||||||  |||||||| ||     ||||| ||||
seq2  --AAAAGGGGAGTGGGTGGGCA--GGAGTGGGTGT-----GATAT-GGGG  127

seq1  ACTTTTGGTA-TAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAA  198
      || ||||||| ||||||  ||||||||||||||||||||| |||||||||
seq2  AC-TTTGGTATTAGCAT--GAAATGTAAATGAGTTAAATA-CTAATAAAA  173

seq1  AATGGAAAAAAAAAAGTACACTCTGTTGTCTTCATGACTTAAATTAAAGA  248
      |   ||||||||||||||||||||| |||| |||||||||||||||||||
seq2  A--TGAAAAAAAAAAGTACACTCTG-TGTC-TCATGACTTAAATTAAAGA  219

seq1  ATGTAGATTTAAAAAAAAACGGTAGATTTTTAAAGCAAAAAGTAAAGATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATTTAAAAAAAAACGGTAGATTTTTAAAGCAAAAAGTAAAGATG  269

seq1  AGATCTTTTGAGGGGTGTTTATATGAAAAGGTGGATAAAACTGTGTTGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTTGAGGGGTGTTTATATGAAAAGGTGGATAAAACTGTGTTGTA  319

seq1  CCCTTTATATAACTAGAATGTATTTGCACGTATTTCTACTTGATTTTGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATATAACTAGAATGTATTTGCACGTATTTCTACTTGATTTTGAA  369

seq1  AGGATTTCAATTTTACATATTTTAAAACAGTTAGTTTAGCAATGATAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCAATTTTACATATTTTAAAACAGTTAGTTTAGCAATGATAATT  419

seq1  TACTTGACTTCTGCGTGGTGACAACAGATGTCTCTCTGAGTCGTGAGGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACTTCTGCGTGGTGACAACAGATGTCTCTCTGAGTCGTGAGGAG  469

seq1  TCAGCAGTGGTATTAACTTAGTATATGTTAAGCAATTGGAAAATGGTACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTGGTATTAACTTAGTATATGTTAAGCAATTGGAAAATGGTACC  519

seq1  TGTGAGAAAATAGAAAAGTGTTCTGTAGTCCTTCCGTTAGGTTTCAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAAATAGAAAAGTGTTCTGTAGTCCTTCCGTTAGGTTTCAAAAT  569

seq1  TGAAATTATTATGAGAATAATTCCCTCTAAATCTTTGAACACATTAGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATTATGAGAATAATTCCCTCTAAATCTTTGAACACATTAGGCT  619

seq1  CTGCTTTTAATCTGACTGACCACTAGTAAATCCCAAGGTGGCCTGAATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTAATCTGACTGACCACTAGTAAATCCCAAGGTGGCCTGAATAA  669

seq1  TGAGTATACTTAAGCTGTATCTGTCTACTAGTATGGACTGTCTTTGTTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATACTTAAGCTGTATCTGTCTACTAGTATGGACTGTCTTTGTTAT  719

seq1  CACATAAAGCTTATCCAAAGGGGGATGTGTTTGTGACTCTGTCCACACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAGCTTATCCAAAGGGGGATGTGTTTGTGACTCTGTCCACACCA  769

seq1  CTCCTACAAAGAACTGTGGAGATAAGGCATGATCTTCCAGAGGCAAACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACAAAGAACTGTGGAGATAAGGCATGATCTTCCAGAGGCAAACAT  819

seq1  CTTCAGTACACTTATAAGATAAAAACAACATAGATTTTAATCAAGTATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTACACTTATAAGATAAAAACAACATAGATTTTAATCAAGTATGT  869

seq1  TTAGAAATTTGTATACAACAATAATTGGCCAATTCTGCTTTGGAGGTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTTGTATACAACAATAATTGGCCAATTCTGCTTTGGAGGTTAA  919

seq1  AGTTTCACTTTTCAAACGTTGTATGTCCGTATACTTTTCACAGTATACTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACTTTTCAAACGTTGTATGTCCGTATACTTTTCACAGTATACTT  969

seq1  TATTTATTGTGTGTGCACATGTGCAATGAAGCACTTGTCAGGAGATGGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTGTGTGTGCACATGTGCAATGAAGCACTTGTCAGGAGATGGGA  1019

seq1  GGACAATTTTGGAGTCTTTGTTTTCTCAGCCATGTGGCTCCAGTGGAATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTTTGGAGTCTTTGTTTTCTCAGCCATGTGGCTCCAGTGGAATG  1069

seq1  AGCTCTGGCCATGAGACATATCTATAAGTACCTTCTCCTGCTGATTCATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCCATGAGACATATCTATAAGTACCTTCTCCTGCTGATTCATC  1119

seq1  TCACTATCCTTAAGGTTTTAAGTTAAATGTTGAGTTTAAATTTTTTACTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCCTTAAGGTTTTAAGTTAAATGTTGAGTTTAAATTTTTTACTT  1169

seq1  TTACTGAATTC  1209
      |||||||||||
seq2  TTACTGAATTC  1180


seq1: chr15_40586878_40587982
seq2: B6Ng01-187O05.g_65_1149

seq1  GAATTCCCTCTGAAGTCAGGAGAAACTGTAGTGAAAGGAAGGCAATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGAAGTCAGGAGAAACTGTAGTGAAAGGAAGGCAATGCTA  50

seq1  ATGGATACTGTACCCTCTTGATATACAAGGGCCGCATCTCTCTCTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACTGTACCCTCTTGATATACAAGGGCCGCATCTCTCTCTGTTTC  100

seq1  TCTGACTCTGTCTCAGTCTCTGCCTCTCTCTGTTTCTCTGTCTCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTGTCTCAGTCTCTGCCTCTCTCTGTTTCTCTGTCTCTCTCTC  150

seq1  TCTCTGTCTCTCTCTGTCTCTCTATCTCTCCCTCTCTCATCCTTCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTGTCTCTCTATCTCTCCCTCTCTCATCCTTCCCCTT  200

seq1  TCTCTCACTTCAATTTGTGTTGTGTAAATACAATTGGAAGAGAAATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTTCAATTTGTGTTGTGTAAATACAATTGGAAGAGAAATTATT  250

seq1  CCCACTAGAAAAGTAGAACTTAATCTCTATGTAGAAGACTACACTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAGAAAAGTAGAACTTAATCTCTATGTAGAAGACTACACTGCCTC  300

seq1  AGTGGTACAAGCTTATGATTCCTGTGTATTTGAAGAAGGAAGAGGTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTACAAGCTTATGATTCCTGTGTATTTGAAGAAGGAAGAGGTAAGC  350

seq1  CGTTACAGTAGTAGAAGTTAAGGCTTAAGCAAATCAGTATTGTAACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAGTAGTAGAAGTTAAGGCTTAAGCAAATCAGTATTGTAACTGGA  400

seq1  AAGGGAGGTATGAAATGTTCTCCTTAACAATAATATTTCACTAAAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGTATGAAATGTTCTCCTTAACAATAATATTTCACTAAAACATG  450

seq1  GGATTTTTTGTACACAATTTTGATCATTTGTAAACAACTCTAAACTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTGTACACAATTTTGATCATTTGTAAACAACTCTAAACTTGTC  500

seq1  AGTCTATATCAGAAGTGAATAAGATTGTTTGAAGTTTTGTTGTCTGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATATCAGAAGTGAATAAGATTGTTTGAAGTTTTGTTGTCTGAAGA  550

seq1  TATTTTCATAATTCTATTCTAGCAATGATCTAGTCATTTTAATGGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATAATTCTATTCTAGCAATGATCTAGTCATTTTAATGGTTTCC  600

seq1  ATAGATAAATTTTTAGATATAAGCTGTATTTCCTTAATAAAAAATATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAATTTTTAGATATAAGCTGTATTTCCTTAATAAAAAATATTAG  650

seq1  GTAATGATCTCATACCACAAATATATGAGTAGAGTATCTCAATTTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATCTCATACCACAAATATATGAGTAGAGTATCTCAATTTTTAAG  700

seq1  CATGATATATTTACACATGCTTAGGGAAGAATAAGAAGTGTACTTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATATTTACACATGCTTAGGGAAGAATAAGAAGTGTACTTATAAA  750

seq1  GATAGTGTATCTTCATTCAAATTTTAGCAATTGATTTTTCATAAAAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTATCTTCATTCAAATTTTAGCAATTGATTTTTCATAAAAGTCA  800

seq1  TTCTATGCTATTCTAAGTAACTATGTAA-TTTTTTTGAAGAGTAAGAGAA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTATGCTATTCTAAGTAACTATGTAATTTTTTTTGAAGAGTAAGAGAA  850

seq1  AAAGCTTTGTTCTTTAAGTATCTATGAAAATGCTGCTAATTGTAAACCAA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGCTTTGTTCTTTAAGTATCTATGAAAATGCTGCTAATTGT-AACCAA  899

seq1  AGGTTCTACTTTTGTGATAGCCCATACCATGTAGGAAATTTTCTATGGTT  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGTTCTACTTTTGTGATAGCCCATACCATGTAGG-AATTTTCTATGGTT  948

seq1  AGAATGACATTTTACTTTTTATTTTGTATTTTTGTCAATTTCACTTGTTT  999
      || |||||||||||||     | |||||    |||| ||||||||   ||
seq2  AG-ATGACATTTTACT-----TATTGTA---GTGTC-ATTTCACT--GTT  986

seq1  CATCAAGTTTCTTGCTAAAGGGCAAGATTTTGTGCACATCTGGAAGATGT  1049
      |||| |||||||||||||||    |||||||||||| |||| || |||||
seq2  CATC-AGTTTCTTGCTAAAG---CAGATTTTGTGCA-ATCT-GAGGATGT  1030

seq1  CAGTAGTATTAAAGCTGCAGGTTTTTTCT-GATTCAATATTGCATAGCTC  1098
      |||||||||| | |||||| ||||||||| ||||| ||| ||||| ||||
seq2  CAGTAGTATT-AGGCTGCAAGTTTTTTCTGGATTCCATA-TGCATGGCTC  1078

seq1  AGTTTAA  1105
      || ||||
seq2  AGGTTAA  1085


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