BAC Information

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BAC

Clone NameB6Ng01-190C08
Chromosome15 (Build37)
Map Location 13,227,097 - 13,384,894
singlet/doubletdoublet
Overlap geneLOC100039907, LOC666686, LOC239338
Upstream geneLOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
Downstream geneLOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190C08.bB6Ng01-190C08.g
ACCGA013977GA013978
length1,151796
definitionB6Ng01-190C08.b B6Ng01-190C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,227,097 - 13,228,265)(13,384,105 - 13,384,894)
sequence
gaattccagtttagtgctcggttcccgctggcctctggaagattagcagg
gcagcaactgacacctcaaactacttccctttaagtcatggaaacagcaa
gcaagcaacaacaacaaaaaaaagagaccacaccaacctcacagctgcct
gaaggtcatccatgcgaatgtcaatcacgcagagatcagtgggcttccag
agacaggcatcacaagagacttacaactcactcacacgctgctttaaagg
tgcattctccctttaaagttctgtgctaatggccacttgatctctcagct
ccctttgctacacttttctcccagctaagccgtccacctagttaatgcca
gtcttgattttctggctttggtaactagaaatgccaaagccagaagcatt
tttttttaaacctttccctttgaaagaagagagagacccgaggatgctga
gcagtgactcattgagatgctcagccgggtttaaaatggggttgcttgtc
tctctatatgatttagtgtcaggtaggtgcaaggaattgggttttttttt
tttttttttttttttttttgatattgggaacccaagaaactgcactctga
tttgtgacatcaatcaatttacactgagggccaggaggagatagttcagc
gggtaaagtgcttcctgggcaagcatgaggttctgggtcgagtccccaga
attcttgtgaaagccagctgaggtgatctgtctcatgcttgcaatcccag
aactggaaaggctgcgacaggaggatcttggtgcttgctgctatgccacg
tcagtctagaggaatcagtgaggtccaggtttggtgacagagaaaaaaaa
tgtgatggaaagtaattgaggaatacttccatgtatatgggaacaccaca
cttgcaccagtgtacacacccaaataagtaaaaatacaccacacacacag
tgattacattgaccttactagacttagtagtcaaatattattttattctc
tgacactaccatggatgcatcatttctagagaaggctgcacctcctccag
agtcagttatgccgtcagtatacgatgtcagtcaaatcagatctcccttg
gcaagatagtcacagaatgcaatgaatgagactcattacaaccctgagcc
c

gaattctaaatacattcacagctcctaataacaccccttctactcaaggg
gcaatttccacttgttcagtgtatttatgcattttcagctaacatcccac
aagctactgcaaccagagattatggcaaattaaggcctttctccttcctt
cttaatttgcttccgtattccacgtacaaagaacctgcttgaattgagag
atttgacctaaattccactttatcaagaaggttgcctgcagtttacaatg
tgaaaattgagggggtgggggggatggacattgattttccaaagttcaag
tctaggaaacattagcataagcactttgatgatcatgacagtaaatctag
agaattaatctcgaaagcaatcacagttcagctcctctacatctttatag
atcagaatgacctattttaattaattattccagatacaaagagacagctg
ctttgcatagaaagttagagctgttacctgcttccagggcttttacattg
agtaaattgttttcctttcttttctttttctttttttttttttaagatgt
acttattattatatataagtacactgcagctgtcttcagacacaccagaa
gagggcgtcagatctcattacggatggttgtgagccaccatgtggctgct
gggatttgaactcaagaccttcaggagagcagtcaatgctctcctgaagc
gctgagccatctcaccagccccccaagtaaattgtttttcaaaaactgag
ttcctatgttttttccttctatttatttatttttcatgtgatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13227097_13228265
seq2: B6Ng01-190C08.b_47_1197

seq1  GAATTCCAGTTTAGTGCTCGGTTCCCGCTGGCCTCTGGAAGATTAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTAGTGCTCGGTTCCCGCTGGCCTCTGGAAGATTAGCAGG  50

seq1  GCAGCAACTGACACCTCAAACTACTTCCCTTTAAGTCATGGAAACAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAACTGACACCTCAAACTACTTCCCTTTAAGTCATGGAAACAGCAA  100

seq1  GCAAGCAACAACAACAAAAAAAAGAGACCACACCAACCTCACAGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAACAACAACAAAAAAAAGAGACCACACCAACCTCACAGCTGCCT  150

seq1  GAAGGTCATCCATGCGAATGTCAATCACGCAGAGATCAGTGGGCTTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCATCCATGCGAATGTCAATCACGCAGAGATCAGTGGGCTTCCAG  200

seq1  AGACAGGCATCACAAGAGACTTACAACTCACTCACACGCTGCTTTAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCATCACAAGAGACTTACAACTCACTCACACGCTGCTTTAAAGG  250

seq1  TGCATTCTCCCTTTAAAGTTCTGTGCTAATGGCCACTTGATCTCTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTCCCTTTAAAGTTCTGTGCTAATGGCCACTTGATCTCTCAGCT  300

seq1  CCCTTTGCTACACTTTTCTCCCAGCTAAGCCGTCCACCTAGTTAATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCTACACTTTTCTCCCAGCTAAGCCGTCCACCTAGTTAATGCCA  350

seq1  GTCTTGATTTTCTGGCTTTGGTAACTAGAAATGCCAAAGCCAGAAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGATTTTCTGGCTTTGGTAACTAGAAATGCCAAAGCCAGAAGCATT  400

seq1  TTTTTTTAAACCTTTCCCTTTGAAAGAAGAGAGAGACCCGAGGATGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAACCTTTCCCTTTGAAAGAAGAGAGAGACCCGAGGATGCTGA  450

seq1  GCAGTGACTCATTGAGATGCTCAGCCGGGTTTAAAATGGGGTTGCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACTCATTGAGATGCTCAGCCGGGTTTAAAATGGGGTTGCTTGTC  500

seq1  TCTCTATATGATTTAGTGTCAGGTAGGTGCAAGGAATTGGGTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATGATTTAGTGTCAGGTAGGTGCAAGGAATTGGGTTTTTTTTT  550

seq1  TTTTTTTTTTTTTTTTTTTGATATTGGGAACCCAAGAAACTGCACTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGATATTGGGAACCCAAGAAACTGCACTCTGA  600

seq1  TTTGTGACATCAATCAATTTACACTGAGGGCCAGGAGGAGATAGTTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACATCAATCAATTTACACTGAGGGCCAGGAGGAGATAGTTCAGC  650

seq1  GGGTAAAGTGCTTCCTGGGCAAGCATGAGGTTCTGGGTCGAGTCCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGTGCTTCCTGGGCAAGCATGAGGTTCTGGGTCGAGTCCCCAGA  700

seq1  ATTCTTGTGAAAGCCAGCTGAGGTGATCTGTCTCATGCTTGCAATCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTGAAAGCCAGCTGAGGTGATCTGTCTCATGCTTGCAATCCCAG  750

seq1  AACTGGAAAGGCTGCGACAGGAGGATCTTGGTGCTTGCTGCTATGCCACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAAGGCTGCGACAGGAGGATCTTGGTGCTTGCTGCTATGCCACG  800

seq1  TCAGTCTAGAGGAATCAGTGAGGTCCAGGTTTGGTGACAGAGAAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTAGAGGAATCAGTGAGGTCCAGGTTTGGTGACAGAGAAAAAAAA  850

seq1  TGTGATGGAAAGTAATTGAGGAATACTTCCATGTATATGGGAACA-CACA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGATGGAAAGTAATTGAGGAATACTTCCATGTATATGGGAACACCACA  900

seq1  CTTGCACCAGTGTACACACCCAAATAAGTAAAAATACA-CACACACACAG  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGCACCAGTGTACACACCCAAATAAGTAAAAATACACCACACACACAG  950

seq1  TGATTACATTGACCTTACTAGACTTAGTAGTCAAATA-TATTTTATTCTC  997
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGATTACATTGACCTTACTAGACTTAGTAGTCAAATATTATTTTATTCTC  1000

seq1  TTGACACTACCATGGTTGCATCATTTCTAGAG-AGGCTGCACCTTCTCCA  1046
       |||||||||||||| |||||||||||||||| ||||||||||| |||||
seq2  -TGACACTACCATGGATGCATCATTTCTAGAGAAGGCTGCACCTCCTCCA  1049

seq1  GAGTCAGTTTATGGCCGTCAGTTATAACGATGTTCAGTTCAAATCAAGGT  1096
      ||||||| |||| |||||||| ||| |||||| |||| ||||||||    
seq2  GAGTCAG-TTAT-GCCGTCAG-TAT-ACGATG-TCAG-TCAAATCA---G  1090

seq1  ATCTCCTTGCGAAAAGATAGGTCACAGAATGCAAAATGGAAAATGGGAGA  1146
      |||||| |  |  |||||| ||||||||||||  ||||   |||  ||||
seq2  ATCTCCCT-TGGCAAGATA-GTCACAGAATGC--AATG---AAT--GAGA  1131

seq1  CTCATTTTAACAACCCTGAGCCC  1169
      ||||||   ||||||||||||||
seq2  CTCATT---ACAACCCTGAGCCC  1151


seq1: chr15_13384105_13384894
seq2: B6Ng01-190C08.g_66_861 (reverse)

seq1  AAAGATC-CCTG-AAAATAAATAAATAGAAG--AAAAACATAGGAACTCA  46
      ||||||| | || ||||||||||||||||||  |||||||||||||||||
seq2  AAAGATCACATGAAAAATAAATAAATAGAAGGAAAAAACATAGGAACTCA  50

seq1  GTTTTTG-AAAACAATTTACTT-GGGGGCTGGTGAGATGGCTCAGCGCTT  94
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  GTTTTTGAAAAACAATTTACTTGGGGGGCTGGTGAGATGGCTCAGCGCTT  100

seq1  CAGGAGAGCATTGACTGCTCTCCTGAAGGTCTTGAGTTCAAATCCCAGCA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGCATTGACTGCTCTCCTGAAGGTCTTGAGTTCAAATCCCAGCA  150

seq1  GCCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACGCCCTCTTCT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACGCCCTCTTCT  200

seq1  GGTGTGTCTGAAGACAGCTGCAGTGTACTTATATATAATAATAAGTACAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTGAAGACAGCTGCAGTGTACTTATATATAATAATAAGTACAT  250

seq1  CTTAAAAAAAAAAAAAGAAAAAGAAAAGAAAGGAAAACAATTTACTCAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAAAAAAGAAAAAGAAAAGAAAGGAAAACAATTTACTCAAT  300

seq1  GTAAAAGCCCTGGAAGCAGGTAACAGCTCTAACTTTCTATGCAAAGCAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCCCTGGAAGCAGGTAACAGCTCTAACTTTCTATGCAAAGCAGC  350

seq1  TGTCTCTTTGTATCTGGAATAATTAATTAAAATAGGTCATTCTGATCTAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTGTATCTGGAATAATTAATTAAAATAGGTCATTCTGATCTAT  400

seq1  AAAGATGTAGAGGAGCTGAACTGTGATTGCTTTCGAGATTAATTCTCTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTAGAGGAGCTGAACTGTGATTGCTTTCGAGATTAATTCTCTAG  450

seq1  ATTTACTGTCATGATCATCAAAGTGCTTATGCTAATGTTTCCTAGACTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGTCATGATCATCAAAGTGCTTATGCTAATGTTTCCTAGACTTG  500

seq1  AACTTTGGAAAATCAATGTCCATCCCCCCCACCCCCTCAATTTTCACATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGAAAATCAATGTCCATCCCCCCCACCCCCTCAATTTTCACATT  550

seq1  GTAAACTGCAGGCAACCTTCTTGATAAAGTGGAATTTAGGTCAAATCTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTGCAGGCAACCTTCTTGATAAAGTGGAATTTAGGTCAAATCTCT  600

seq1  CAATTCAAGCAGGTTCTTTGTACGTGGAATACGGAAGCAAATTAAGAAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAGCAGGTTCTTTGTACGTGGAATACGGAAGCAAATTAAGAAGG  650

seq1  AAGGAGAAAGGCCTTAATTTGCCATAATCTCTGGTTGCAGTAGCTTGTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAGGCCTTAATTTGCCATAATCTCTGGTTGCAGTAGCTTGTGG  700

seq1  GATGTTAGCTGAAAATGCATAAATACACTGAACAAGTGGAAATTGCCCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGCTGAAAATGCATAAATACACTGAACAAGTGGAAATTGCCCCT  750

seq1  TGAGTAGAAGGGGTGTTATTAGGAGCTGTGAATGTATTTAGAATTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAAGGGGTGTTATTAGGAGCTGTGAATGTATTTAGAATTC  796


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