BAC Information

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BAC

Clone NameB6Ng01-191A13
Chromosome15 (Build37)
Map Location 47,845,538 - 47,980,895
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191A13.bB6Ng01-191A13.g
ACCGA014639GA014640
length1,0241,129
definitionB6Ng01-191A13.b B6Ng01-191A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,980,316 - 47,980,895)(47,845,538 - 47,846,678)
sequence
gaattctgaatattatttaaactgagttcaaactgaaagcatgattcatt
ctacataattccaaattttgttgtgtagtagcaacctctcctacaaaaat
atgtttataattaccatagtctctgtggagtagtatgttggttctaaagg
aacatctgctaaagtcctttcagattccatctaaatatatcctctttgta
tgtgatagcattagacaaacagatcaacttatacacagcctttattaaga
agagtataacatttgtattttaaaaggttaattctttgagaatttcatgg
attgtttttattatagttaccaccttgtcaacttatttgattaataccct
ctcattccacatacacaaaatctttgtacccttagattttttttgattgt
tttatatctgtgcattctagttagtactgttatacattgtggtatgagcc
tatctattggagtgcagtctatctgccaggaggtatacattcccctgctc
cttttaaagaaaatagattacttttcatacactatatctggatttcagtt
tcctttagtgaattcctctgaattactctgtaactcccctccctgtggat
ccactccttttctgtttctcagaagaaaagaatagccttcaaagagataa
caacaaaacataacataaaatatcataagataaaattaaaaatatcatat
tgaatttggaaaaggcaaatgaactgaaggaaaagagcccgagagaaagc
agtaaaatcagagaccttgtctttcatatactcaggataaaattactaag
ctgaaagctgtaatatttagacagaggaactggtgcaaaaataaaaattg
tcagccctatgcttgctatatcagcctctgtgagttcatatgagctttgc
tcagctaatttagagggccttgttttcctctgtttcttctgcctcatcta
tcaagaggttcctatacttcaagggaagggatttgataagacctcccatt
cagattcatgtgtttcaaaatctt

gaattctagagttgtccttgcaaaccgttaagtccttagaagaaacccct
tttaaaccaccaaagtccacaggagatttcacttactgccatctctgtgg
attcttccatttttgtatccatttttgatatcaaagaaagaagttagtag
tttcatagttatagaacgagataatggctatttgaatcttagaacgttca
aaaactaccatatgaacctgtatggcttatatgtatcaattaagtattaa
ttaaattatatgaaggattattcttatatggaactggttttattttaatt
ttatgagcagtaagagcaacttctatatattagaagtgatgctaagaggt
aaaagaatagcagaactgttacatggttttacctagtactataataaatt
gtcaaacagcttcatatgtttttctggtgattacagtacatacctgtcct
ttcatcacttcagaggcagaggccaaaaagaatcagctgacagttttcat
gggctacacagtaagtttgagaccagcctctgctgtatatgataccatcc
acaaaccaaaaccccaacaaaatcattctaattcttaaaaatgtttattt
gtacttattagatgttattgcttatacttgttaagttttacaattatatt
agcctgctcaaaggattagttcaaatatctttgacaatttttgatcaatt
ctactgttttactttagttgagatatatttctttatagttctacctttgt
ttcttttagaccatttttatttctacatttgggaagaaatattatagagt
atttactcatatttttagctcttatagttttgtaaaagtaaaataagttg
cctctcaattttcttctacatactgctttgaataaaaatgtattattctt
ctaaatactctattccatttttatttaatattttatgtgtaattgggact
tcaaatttttcagttggcattctttatatttgtgttttgctatattcatt
cttgagagttcattaatatgtgttggttaatttactgctttaccaatctt
ctcatactgggctctattcccccaactattttgggtctaatttttgtttt
attccctcagaacaatttggtactgctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47980316_47980895
seq2: B6Ng01-191A13.b_43_622 (reverse)

seq1  CAGAGTAATTCAGAGGAATTCACTAAAGGAAACTGAAATCCAGATATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAATTCAGAGGAATTCACTAAAGGAAACTGAAATCCAGATATAGT  50

seq1  GTATGAAAAGTAATCTATTTTCTTTAAAAGGAGCAGGGGAATGTATACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAAGTAATCTATTTTCTTTAAAAGGAGCAGGGGAATGTATACCT  100

seq1  CCTGGCAGATAGACTGCACTCCAATAGATAGGCTCATACCACAATGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGATAGACTGCACTCCAATAGATAGGCTCATACCACAATGTATA  150

seq1  ACAGTACTAACTAGAATGCACAGATATAAAACAATCAAAAAAAATCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTAACTAGAATGCACAGATATAAAACAATCAAAAAAAATCTAAG  200

seq1  GGTACAAAGATTTTGTGTATGTGGAATGAGAGGGTATTAATCAAATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAAGATTTTGTGTATGTGGAATGAGAGGGTATTAATCAAATAAGT  250

seq1  TGACAAGGTGGTAACTATAATAAAAACAATCCATGAAATTCTCAAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTGGTAACTATAATAAAAACAATCCATGAAATTCTCAAAGAAT  300

seq1  TAACCTTTTAAAATACAAATGTTATACTCTTCTTAATAAAGGCTGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTTTAAAATACAAATGTTATACTCTTCTTAATAAAGGCTGTGTAT  350

seq1  AAGTTGATCTGTTTGTCTAATGCTATCACATACAAAGAGGATATATTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATCTGTTTGTCTAATGCTATCACATACAAAGAGGATATATTTAG  400

seq1  ATGGAATCTGAAAGGACTTTAGCAGATGTTCCTTTAGAACCAACATACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATCTGAAAGGACTTTAGCAGATGTTCCTTTAGAACCAACATACTA  450

seq1  CTCCACAGAGACTATGGTAATTATAAACATATTTTTGTAGGAGAGGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGAGACTATGGTAATTATAAACATATTTTTGTAGGAGAGGTTGC  500

seq1  TACTACACAACAAAATTTGGAATTATGTAGAATGAATCATGCTTTCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACACAACAAAATTTGGAATTATGTAGAATGAATCATGCTTTCAGTT  550

seq1  TGAACTCAGTTTAAATAATATTCAGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  TGAACTCAGTTTAAATAATATTCAGAATTC  580


seq1: chr15_47845538_47846678
seq2: B6Ng01-191A13.g_66_1194

seq1  GAATTCTAGAGTTGTCCTTGCAAACCGTTAAGTCCTTAGAAGAAACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGTTGTCCTTGCAAACCGTTAAGTCCTTAGAAGAAACCCCT  50

seq1  TTTAAACCACCAAAGTCCACAGGAGATTTCACTTACTGCCATCTCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCACCAAAGTCCACAGGAGATTTCACTTACTGCCATCTCTGTGG  100

seq1  ATTCTTCCATTTTTGTATCCATTTTTGATATCAAAGAAAGAAGTTAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCATTTTTGTATCCATTTTTGATATCAAAGAAAGAAGTTAGTAG  150

seq1  TTTCATAGTTATAGAACGAGATAATGGCTATTTGAATCTTAGAACGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTTATAGAACGAGATAATGGCTATTTGAATCTTAGAACGTTCA  200

seq1  AAAACTACCATATGAACCTGTATGGCTTATATGTATCAATTAAGTATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCATATGAACCTGTATGGCTTATATGTATCAATTAAGTATTAA  250

seq1  TTAAATTATATGAAGGATTATTCTTATATGGAACTGGTTTTATTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATATGAAGGATTATTCTTATATGGAACTGGTTTTATTTTAATT  300

seq1  TTATGAGCAGTAAGAGCAACTTCTATATATTAGAAGTGATGCTAAGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCAGTAAGAGCAACTTCTATATATTAGAAGTGATGCTAAGAGGT  350

seq1  AAAAGAATAGCAGAACTGTTACATGGTTTTACCTAGTACTATAATAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATAGCAGAACTGTTACATGGTTTTACCTAGTACTATAATAAATT  400

seq1  GTCAAACAGCTTCATATGTTTTTCTGGTGATTACAGTACATACCTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACAGCTTCATATGTTTTTCTGGTGATTACAGTACATACCTGTCCT  450

seq1  TTCATCACTTCAGAGGCAGAGGCCAAAAAGAATCAGCTGACAGTTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACTTCAGAGGCAGAGGCCAAAAAGAATCAGCTGACAGTTTTCAT  500

seq1  GGGCTACACAGTAAGTTTGAGACCAGCCTCTGCTGTATATGATACCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACAGTAAGTTTGAGACCAGCCTCTGCTGTATATGATACCATCC  550

seq1  ACAAACCAAAACCCCAACAAAATCATTCTAATTCTTAAAAATGTTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAAACCCCAACAAAATCATTCTAATTCTTAAAAATGTTTATTT  600

seq1  GTACTTATTAGATGTTATTGCTTATACTTGTTAAGTTTTACAATTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATTAGATGTTATTGCTTATACTTGTTAAGTTTTACAATTATATT  650

seq1  AGCCTGCTCAAAGGATTAGTTCAAATATCTTTGACAATTTTTGATCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTCAAAGGATTAGTTCAAATATCTTTGACAATTTTTGATCAATT  700

seq1  CTACTGTTTTACTTTAGTTGAGATATATTTCTTTATAGTTCTACCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTTACTTTAGTTGAGATATATTTCTTTATAGTTCTACCTTTGT  750

seq1  TTCTTTTAGACCATTTTTATTTCTACATTTGGGAAGAAATATTATAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAGACCATTTTTATTTCTACATTTGGGAAGAAATATTATAGAGT  800

seq1  ATTTACTCATATTTTTAGCTCTTATAGTTTTGTAAAAGTAAAATAAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCATATTTTTAGCTCTTATAGTTTTGTAAAAGTAAAATAAGTTG  850

seq1  CCTCTCAATTTTCTTCTACATACTGCTTTGAATAAAAATGTATTATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTCTCAATTTTCTTCTACATACTGCTTTGAATAAAAATGTATTA-TTCT  899

seq1  TCTAAATACTCTATTTCCATTTTTATTTAATATTTTATGTGTAATTGGGA  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACTCTA-TTCCATTTTTATTTAATATTTTATGTGTAATTGGGA  948

seq1  CTTCAAATTTTTCAGTTGGCATTTCTTTATATTTGTTGTTTTGCTATTAT  1000
      ||||||||||||||||||||| ||||||||||||| |||||||||| |||
seq2  CTTCAAATTTTTCAGTTGGCA-TTCTTTATATTTG-TGTTTTGCTA-TAT  995

seq1  TCATTCTTTGAGAGTTTCATTTAATATGTGTTGGTTAAATTTACTGCTTT  1050
      |||||| ||||||| |||| |||||||||||||||| |||||||||||||
seq2  TCATTC-TTGAGAG-TTCA-TTAATATGTGTTGGTT-AATTTACTGCTTT  1041

seq1  ACCCAATTCTTCTCATACTGTGCTCTATTTCCCCCAAACTATTTTGTGTC  1100
      |||  | ||||||||||||| ||||||||  |||| |||||||||| |||
seq2  ACC--AATCTTCTCATACTGGGCTCTATT--CCCCCAACTATTTTGGGTC  1087

seq1  TAATTTTTGTTTTA-TCCCTCAAGAACAATTT-GTACTGCTAA  1141
      |||||||||||||| |||||| |||||||||| ||||||||||
seq2  TAATTTTTGTTTTATTCCCTC-AGAACAATTTGGTACTGCTAA  1129


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