BAC Information

Click to search

BAC

Clone NameB6Ng01-193B09
Chromosome15 (Build37)
Map Location 8,635,259 - 8,730,804
singlet/doubletdoublet
Overlap geneSlc1a3
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633
Downstream geneEG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193B09.bB6Ng01-193B09.g
ACCGA016157GA016158
length1,1761,138
definitionB6Ng01-193B09.b B6Ng01-193B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,729,624 - 8,730,804)(8,635,259 - 8,636,416)
sequence
gaattctgggctctcaataaatcagtcagaatccggcagaaataatggtt
gtccacaaaggacagccaccccatttcaatttatgtttacgtgacctcct
gtagcacgctttggacagtctggtcaaagaagcacttcgtgctacaggga
ggcccaagtgcaaaggcatcagagatgattaagtaaggttaattcagaaa
caattgaataaggcaaagtcttgttggccacgctccaagaaaactctttt
ccctgtacaatgatcaggctgcctttgaagtttcagagtcttagcagaaa
aaaaaaatgcaatttttaatgtttcacacagcattcagtattttgccctg
aatagattattgtagcatttatcatggcccaaatttatctggtattaatt
atttgtaataacagaagccaaatagcataaagcaagacatcacttatcca
gtgtcaaggagaggaagtcgatcagtcagcattcctagctgcactggtag
gaccaactctagcttgattggaattgagagagaatgactttcttccgtgt
gcattaggtgtggctgtgctcacccaggcatgcatgtgtggaggtcagag
gtcaacgtcagatgtcttcttcactaccctccatcttggtttgtttgttt
gtttgtttgtttgtttgttttttgacatagagtacccattgaacctagag
ctgtctgttgagactaaactggctggccagtgaacccgcagaatcctatt
ctgccagaattggggttgcagatatagctacagccggctttcgagttgtg
gaagtcagaatgcagcttgccttaattgcaaaacaaaaccttttatccac
agagtcaccctccagacccatgtagtgcccttcattaaggataccactct
ggaccagggaattttgttcccctttaacctcatgacctcagacaatcatc
caaggtataccaccagatatgtctcctgtaactaagtcctatctcctttg
gacactatttagtgagatgaagaatggagaagacttacacttggatctgc
agggagacaaggagctctgtagagatgatgatgcatctggccttgttagc
ccacctcgatctccaccttctgtttggccaatgactttctcaggttctca
tgttctcatggcatcattccactttt
gaattccagtggaggtgaactatgtttggtttaggattaaccggtgggga
aagcagggtacatacaaaccaggaaacgcatactagaggtccaagaacag
tggcaagcactgataaccaagcctgtgctttaacactcgcattccaaggg
ctaactgaaccaggagaagtcctttggttggctaccttgtcctgttttgt
gaattttgatcaaaactgaaagcttgggaagctctcttaaaaccttggat
aactaaattctcttgaacactggccatgtttcactcttgtggacacatag
tggcaacttgttgaagctgattaattttatatttctcaagtctcaacagc
ctccttgctccactttcggccacattactctacagtgcagtccacttaat
catctcacttagcccagctcgctcttctgttggagaaaaatatttccccg
tatccatgactatcaaagttgggaaacataaagtagcccgcaagggcatc
ttcatgtatacacgtcacccacttgatgactgcgagctttcgggactgct
tttttttttttttccttcattcttgaataatggagccttactttgctacc
tcccaggacaacacatttccccagtaacatctcccagtaggctcagggat
cctctgggggcgagggagggggtggtctgtgtaatttgcaaatatttcct
cttctatgttcccactttttgaatgttttgcatttaaaaccacaaaggaa
agtctcggggagtcaatcaatcattttaattgatcgtaagtatctgagtg
gctgtgtagcctggggattaattccaggagatgaacactgctaaaacatc
tttgctcagctacatgctgctcctaggccctttccttgacccagccctga
aaaaaggataaaattccctttatggttccatgtgccactccacttgcaac
tagggttatgttaagcgccctttttatatggtgcttgcaagcttgctaat
ctctcttttttcaaaacaaaaacaaaaatccatattaataagcgttgcta
atttctcaattgtttgaacaaggctttctttacgctgaagaatcaggagc
agtactttttggtctgaaaaattatccaacaaagctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_8729624_8730804
seq2: B6Ng01-193B09.b_49_1224 (reverse)

seq1  AAAAGGTGGAATGATGCCCTTTGAGACAT--GAACTTGGAGAAAGCCA-T  47
       ||| ||||||||||||| |  || ||||  |||| | ||||||| || |
seq2  -AAAAGTGGAATGATGCCATGAGA-ACATGAGAACCT-GAGAAAGTCATT  47

seq1  GGGCAAACAGAAGGT-GAGATCGAGGTGGGCTACCAGGGCAAGATGCAAT  96
      || |||||||||||| ||||||||||||||||| || ||| |||||| ||
seq2  GGCCAAACAGAAGGTGGAGATCGAGGTGGGCTAACAAGGCCAGATGC-AT  96

seq1  CATTCATCTCCTACAGAAGCTTCCTGTCTCCCCTGCAGATTCCAAGTTGT  146
      || |||||| |||||| |||| | ||||| ||||||||| |||||||   
seq2  CA-TCATCT-CTACAG-AGCTCCTTGTCT-CCCTGCAGA-TCCAAGTGTA  141

seq1  AGTCTTTCTCCATCCTTCATCTCACTAAATAGTGTCC-AAGGAGATAGGA  195
      |||| |||||||| ||||||||||||||||||||||| ||||||||||||
seq2  AGTC-TTCTCCATTCTTCATCTCACTAAATAGTGTCCAAAGGAGATAGGA  190

seq1  CTTAGTTAACAGGAGACATATCTGGTGGTATACCTTGGATGA-TGTCTGA  244
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  CTTAGTT-ACAGGAGACATATCTGGTGGTATACCTTGGATGATTGTCTGA  239

seq1  GGTCATGAGGTTAAAGGGGAACAAAATTCCCTGGTCCAGAGTGGTATCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGAGGTTAAAGGGGAACAAAATTCCCTGGTCCAGAGTGGTATCCT  289

seq1  TAATGAAGGGCACTACATGGGTCTGGAGGGTGACTCTGTGGATAAAAGGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGGGCACTACATGGGTCTGGAGGGTGACTCTGTGGATAAAAGGT  339

seq1  TTTGTTTTGCAATTAAGGCAAGCTGCATTCTGACTTCCACAACTCGAAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGCAATTAAGGCAAGCTGCATTCTGACTTCCACAACTCGAAAG  389

seq1  CCGGCTGTAGCTATATCTGCAACCCCAATTCTGGCAGAATAGGATTCTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGTAGCTATATCTGCAACCCCAATTCTGGCAGAATAGGATTCTGC  439

seq1  GGGTTCACTGGCCAGCCAGTTTAGTCTCAACAGACAGCTCTAGGTTCAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACTGGCCAGCCAGTTTAGTCTCAACAGACAGCTCTAGGTTCAAT  489

seq1  GGGTACTCTATGTCAAAAAACAAACAAACAAACAAACAAACAAACAAACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTCTATGTCAAAAAACAAACAAACAAACAAACAAACAAACAAACC  539

seq1  AAGATGGAGGGTAGTGAAGAAGACATCTGACGTTGACCTCTGACCTCCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAGGGTAGTGAAGAAGACATCTGACGTTGACCTCTGACCTCCAC  589

seq1  ACATGCATGCCTGGGTGAGCACAGCCACACCTAATGCACACGGAAGAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGCCTGGGTGAGCACAGCCACACCTAATGCACACGGAAGAAAG  639

seq1  TCATTCTCTCTCAATTCCAATCAAGCTAGAGTTGGTCCTACCAGTGCAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTCTCAATTCCAATCAAGCTAGAGTTGGTCCTACCAGTGCAGC  689

seq1  TAGGAATGCTGACTGATCGACTTCCTCTCCTTGACACTGGATAAGTGATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGCTGACTGATCGACTTCCTCTCCTTGACACTGGATAAGTGATG  739

seq1  TCTTGCTTTATGCTATTTGGCTTCTGTTATTACAAATAATTAATACCAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTATGCTATTTGGCTTCTGTTATTACAAATAATTAATACCAGA  789

seq1  TAAATTTGGGCCATGATAAATGCTACAATAATCTATTCAGGGCAAAATAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGGCCATGATAAATGCTACAATAATCTATTCAGGGCAAAATAC  839

seq1  TGAATGCTGTGTGAAACATTAAAAATTGCATTTTTTTTTTCTGCTAAGAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTGTGTGAAACATTAAAAATTGCATTTTTTTTTTCTGCTAAGAC  889

seq1  TCTGAAACTTCAAAGGCAGCCTGATCATTGTACAGGGAAAAGAGTTTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACTTCAAAGGCAGCCTGATCATTGTACAGGGAAAAGAGTTTTCT  939

seq1  TGGAGCGTGGCCAACAAGACTTTGCCTTATTCAATTGTTTCTGAATTAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGTGGCCAACAAGACTTTGCCTTATTCAATTGTTTCTGAATTAAC  989

seq1  CTTACTTAATCATCTCTGATGCCTTTGCACTTGGGCCTCCCTGTAGCACG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTAATCATCTCTGATGCCTTTGCACTTGGGCCTCCCTGTAGCACG  1039

seq1  AAGTGCTTCTTTGACCAGACTGTCCAAAGCGTGCTACAGGAGGTCACGTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTCTTTGACCAGACTGTCCAAAGCGTGCTACAGGAGGTCACGTA  1089

seq1  AACATAAATTGAAATGGGGTGGCTGTCCTTTGTGGACAACCATTATTTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATTGAAATGGGGTGGCTGTCCTTTGTGGACAACCATTATTTCT  1139

seq1  GCCGGATTCTGACTGATTTATTGAGAGCCCAGAATTC  1181
      |||||||||||||||||||||||||||||||||||||
seq2  GCCGGATTCTGACTGATTTATTGAGAGCCCAGAATTC  1176

seq1: chr15_8635259_8636416
seq2: B6Ng01-193B09.g_65_1202

seq1  GAATTCCAGTGGAGGTGAACTATGTTTGGTTTAGGATTAACCGGTGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGAGGTGAACTATGTTTGGTTTAGGATTAACCGGTGGGGA  50

seq1  AAGCAGGGTACATACAAACCAGGAAACGCATACTAGAGGTCCAAGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGTACATACAAACCAGGAAACGCATACTAGAGGTCCAAGAACAG  100

seq1  TGGCAAGCACTGATAACCAAGCCTGTGCTTTAACACTCGCATTCCAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCACTGATAACCAAGCCTGTGCTTTAACACTCGCATTCCAAGGG  150

seq1  CTAACTGAACCAGGAGAAGTCCTTTGGTTGGCTACCTTGTCCTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGAACCAGGAGAAGTCCTTTGGTTGGCTACCTTGTCCTGTTTTGT  200

seq1  GAATTTTGATCAAAACTGAAAGCTTGGGAAGCTCTCTTAAAACCTTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGATCAAAACTGAAAGCTTGGGAAGCTCTCTTAAAACCTTGGAT  250

seq1  AACTAAATTCTCTTGAACACTGGCCATGTTTCACTCTTGTGGACACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTCTCTTGAACACTGGCCATGTTTCACTCTTGTGGACACATAG  300

seq1  TGGCAACTTGTTGAAGCTGATTAATTTTATATTTCTCAAGTCTCAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTTGTTGAAGCTGATTAATTTTATATTTCTCAAGTCTCAACAGC  350

seq1  CTCCTTGCTCCACTTTCGGCCACATTACTCTACAGTGCAGTCCACTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCTCCACTTTCGGCCACATTACTCTACAGTGCAGTCCACTTAAT  400

seq1  CATCTCACTTAGCCCAGCTCGCTCTTCTGTTGGAGAAAAATATTTCCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACTTAGCCCAGCTCGCTCTTCTGTTGGAGAAAAATATTTCCCCG  450

seq1  TATCCATGACTATCAAAGTTGGGAAACATAAAGTAGCCCGCAAGGGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGACTATCAAAGTTGGGAAACATAAAGTAGCCCGCAAGGGCATC  500

seq1  TTCATGTATACACGTCACCCACTTGATGACTGCGAGCTTTCGGGACTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATACACGTCACCCACTTGATGACTGCGAGCTTTCGGGACTGCT  550

seq1  TTTTTTTTTTTTTCCTTCATTCTTGAATAATGGAGCCTTACTTTGCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCCTTCATTCTTGAATAATGGAGCCTTACTTTGCTACC  600

seq1  TCCCAGGACAACACATTTCCCCAGTAACATCTCCCAGTAGGCTCAGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGACAACACATTTCCCCAGTAACATCTCCCAGTAGGCTCAGGGAT  650

seq1  CCTCTGGGGGCGAGGGAGGGGGTGGTCTGTGTAATTTGCAAATATTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGGGCGAGGGAGGGGGTGGTCTGTGTAATTTGCAAATATTTCCT  700

seq1  CTTCTATGTTCCCACTTTTTGAATGTTTTGCATTTAAAACCACAAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGTTCCCACTTTTTGAATGTTTTGCATTTAAAACCACAAAGGAA  750

seq1  AGTCTCGGGGAGTCAATCAATCATTTTAATTGATCGTAAGTATCTGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCGGGGAGTCAATCAATCATTTTAATTGATCGTAAGTATCTGAGTG  800

seq1  GCTGTGTAGCCTGGGGATTAATTCCAGGAGATGAACACTGCTAAAACATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAGCCTGGGGATTAATTCCAGGAGATGAACACTGCTAAAACATC  850

seq1  TTTGCTCAGCTACATGCTGCTCCTAGGCCCTTTCCTTGACCCAGCCCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGCTCAGCTACATGCTGCTCCTAGGCCCTTTCCTTGACCCAGCCCTG-  899

seq1  AAAAAAGGATAAAATTCCCTTAATGGTTCCATGTGGCCACTCCCAACTTG  950
      ||||||||||||||||||||| |||||||||||| ||||||||  |||||
seq2  AAAAAAGGATAAAATTCCCTTTATGGTTCCATGT-GCCACTCC--ACTTG  946

seq1  CAACTA-GGTTATGTTAAGCGCCCTTTTTATATTGGTTGCTTGC-AGCTT  998
      |||||| ||||||||||||||||||||||||||  | ||||||| |||||
seq2  CAACTAGGGTTATGTTAAGCGCCCTTTTTATAT--GGTGCTTGCAAGCTT  994

seq1  GCTATTCTCTCTTTTTTCAAAACAAAAACAAAAAATCCATATT-ATAAGC  1047
      |||| |||||||||||||||||||||||| ||||||||||||| ||||||
seq2  GCTAATCTCTCTTTTTTCAAAACAAAAAC-AAAAATCCATATTAATAAGC  1043

seq1  GTTGCTAATTTCTCCAATGTTTGACCAAAGCTTTCTTTTTAACCGCTGAA  1097
      |||||||||||||| | ||||||| ||| |||||||||     |||||||
seq2  GTTGCTAATTTCTCAATTGTTTGAACAAGGCTTTCTTT----ACGCTGAA  1089

seq1  AGGGATCAGGAGCAGGGTAACTTTTTTTTTTTTGTCTGAAAAATTATCCA  1147
        | |||||||||||         |  ||||| |||||||||||||||||
seq2  --GAATCAGGAGCAG---------TACTTTTTGGTCTGAAAAATTATCCA  1128

seq1  ACCAAAGCTCT  1158
      | |||||||||
seq2  A-CAAAGCTCT  1138