BAC Information

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BAC

Clone NameB6Ng01-193L03
Chromosome15 (Build37)
Map Location 100,283,353 - 100,412,765
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1
Upstream geneC230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193L03.bB6Ng01-193L03.g
ACCGA016593GA016594
length486481
definitionB6Ng01-193L03.b B6Ng01-193L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,412,274 - 100,412,765)(100,283,353 - 100,283,839)
sequence
caggacagccaaggctacacagagataagggttatagaagttcctactaa
agtagcagatgtctgtaatctcagcctgggctacatagggagttcaattc
cagcctgggttatgggatcctgtcagaaaacagcaacaaaacccctaatt
tagaagtgtatgaatgttacaccatggagctgacacgtgggtatacagtt
agtgtgtgatggtagttagttctgtgctgtcttaggggagctgctggggt
ctccatggctggtaggtgtgtgtatcttgggaagccctgacgtggtggaa
tcaaggactcgtgtctggttaagtcgtcagcttaagttttcccttttttt
tcctctgccatctggggtctcagacatgtatagggtaccatcgctgtgct
attccttcagctttggaagttctagagaaagaccaaggccaatggtctgg
ggaccaaggcgggggggggggcaggtctgaaagcca
ttttcagaagcaagaagataaaataatgacgctttccagaaagtaggtag
acatgcagttttactaaatgaagtggctcagactcagagaggggagtacc
gtatcttctctcatctgcagatcctatatttgaatttttatatatgtgta
tacaaagccatgaaaagaagagagaggtattaaggaaggaaataagagag
agaaagacggtaacaaaatatatgtgacacaagagtggaaaggggacact
ttggaggggtttaagggtccaaggagggtcagggaagatggaagaaggag
atgccagaggaggatcaccagaaacacagtatgaactaccacaataaagg
ccatcactttgtatactaatttaaaaacaaagaagggcctgcaagatggc
tcagagggcaaaggtgcttgcaaccaaatctaaggatctgagttcatgtc
ttggaactcctgttgggggggaggggagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100412274_100412765
seq2: B6Ng01-193L03.b_49_540 (reverse)

seq1  TGGCTCTCAGACCTGCCCCCCCCCCCGCCTTGGTCCCCAGACCATTGGCC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCAGACCTGCCCCCCCCCCCGCCTTGGTCCCCAGACCATTGGCC  50

seq1  TTGGTCTTTCTCTAGAACTTCCAAAGCTGAAGGAATAGCACAGCGATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTTCTCTAGAACTTCCAAAGCTGAAGGAATAGCACAGCGATGGT  100

seq1  ACCCTATACATGTCTGAGACCCCAGATGGCAGAGGAAAAAAAAGGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATACATGTCTGAGACCCCAGATGGCAGAGGAAAAAAAAGGGAAAA  150

seq1  CTTAAGCTGACGACTTAACCAGACACGAGTCCTTGATTCCACCACGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTGACGACTTAACCAGACACGAGTCCTTGATTCCACCACGTCAG  200

seq1  GGCTTCCCAAGATACACACACCTACCAGCCATGGAGACCCCAGCAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCAAGATACACACACCTACCAGCCATGGAGACCCCAGCAGCTCC  250

seq1  CCTAAGACAGCACAGAACTAACTACCATCACACACTAACTGTATACCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACAGCACAGAACTAACTACCATCACACACTAACTGTATACCCAC  300

seq1  GTGTCAGCTCCATGGTGTAACATTCATACACTTCTAAATTAGGGGTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCTCCATGGTGTAACATTCATACACTTCTAAATTAGGGGTTTTG  350

seq1  TTGCTGTTTTCTGACAGGATCCCATAACCCAGGCTGGAATTGAACTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTTTCTGACAGGATCCCATAACCCAGGCTGGAATTGAACTCCCT  400

seq1  ATGTAGCCCAGGCTGAGATTACAGACATCTGCTACTTTAGTAGGAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCCAGGCTGAGATTACAGACATCTGCTACTTTAGTAGGAACTTC  450

seq1  TATAACCCTTATCTCTGTGTAGCCTTGGCTGTCCTGGAATTC  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCTTATCTCTGTGTAGCCTTGGCTGTCCTGGAATTC  492

seq1: chr15_100283353_100283839
seq2: B6Ng01-193L03.g_69_555

seq1  GAATTCTTTTCAGAAGCAAGAAGATAAAATAATGACGCTTTCCAGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAGAAGCAAGAAGATAAAATAATGACGCTTTCCAGAAAGT  50

seq1  AGGTAGACATGCAGTTTTACTAAATGAAGTGGCTCAGACTCAGAGAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGACATGCAGTTTTACTAAATGAAGTGGCTCAGACTCAGAGAGGGG  100

seq1  AGTACCGTATCTTCTCTCATCTGCAGATCCTATATTTGAATTTTTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCGTATCTTCTCTCATCTGCAGATCCTATATTTGAATTTTTATATA  150

seq1  TGTGTATACAAAGCCATGAAAAGAAGAGAGAGGTATTAAGGAAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATACAAAGCCATGAAAAGAAGAGAGAGGTATTAAGGAAGGAAATA  200

seq1  AGAGAGAGAAAGACGGTAACAAAATATATGTGACACAAGAGTGGAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAGACGGTAACAAAATATATGTGACACAAGAGTGGAAAGGG  250

seq1  GACACTTTGGAGGGGTTTAAGGGTCCAAGGAGGGTCAGGGAAGATGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTGGAGGGGTTTAAGGGTCCAAGGAGGGTCAGGGAAGATGGAAG  300

seq1  AAGGAGATGCCAGAGGAGGATCACCAGAAACACAGTATGAACTACCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGCCAGAGGAGGATCACCAGAAACACAGTATGAACTACCACAA  350

seq1  TAAAGGCCATCACTTTGTATACTAATTTAAAAACAAAGAAGGGCCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCATCACTTTGTATACTAATTTAAAAACAAAGAAGGGCCTGCAA  400

seq1  GATGGCTCAGAGGGCAAAGGTGCTTGCAACCAAATCTAAGGATCTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGAGGGCAAAGGTGCTTGCAACCAAATCTAAGGATCTGAGTT  450

seq1  CATGTCTTGGAACTCCTGTTGGGGGGGAGGGGAGAAT  487
      |||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTGGAACTCCTGTTGGGGGGGAGGGGAGAAT  487