BAC Information

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BAC

Clone NameB6Ng01-194H09
Chromosome15 (Build37)
Map Location 102,792,216 - 102,793,355
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11
Downstream geneHoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194H09.bB6Ng01-194H09.g
ACCGA017148GA017149
length1,1401,154
definitionB6Ng01-194H09.b B6Ng01-194H09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaaaccacctggccctagacttcttttggttgggagac
ttttaataactgcttctatttccttgggggttgtaggtctatttgaattg
cttacttgatcttgtttaactttggtaagcggtctatcaaggaaatccac
cactttgtttagatttttcagtttatcaaatacaggttttgaagtaagat
ctaatccaaagaaggatttcctcggtgtctgttatgtccccctttttatt
tctgattttattgatttggacacactctctctgtgtcttttagtttggct
aagggtttgtctctcttgctgattttctcaaaaaatcaatttctaattta
ttgatttcagctgaatttgattatttcctgccatctactcctcttgaatg
tgcttgcttctttttgttttagagcttttaggtgtgcttgttaagatgct
agtatgagatcactcctatttctttataaaggcacttagagctatgaact
ttcctcttagcactgctttcattttgttccatagatttgggtatgttgtg
ccttcattttcattgaattctagaaagtctttaatttctttatttcttct
ttgacccagtggtcatcgagtacagagttgttcagtttccctgagtgtgt
aggctttctgttgtttctgttgttgtggaagtccagctttaatccatggt
gatctgataagatgcagaggttatttcagttttgttgtatctgttgaggc
ttgttttgtgaccaactatatggtcagttttggagaaggttctgtgaggt
gctgaaaagaaggtatgttgcttttgtgttgggagaaatgctctgtagat
atctgtaaggtccattttgattcataaccagttagttttattatttctct
gtttagtttctggcctcaattgaacttgtccattggtgagagttgggtgt
taaaagtctttctacctataacaatgtagggtagatgtgtgatttgagtt
ttagtattgcttcctttacagatgtggatgcccttgatttggggcataga
tgtccgaactgacaagtcatctatgctgatttccttgatgaaatgaaggg
ccttcccccaatcactctcattattgttgatgcgtgtgtg
gaattctcagaggtccagggaagaaaggttcaagcaggtaaagaggtgag
aggctgaggacggataaaggggcttctgttctacttcggattctgctgcc
actctggcaggcagggctgccagcggactcgctctcacatctagacatcg
tacacacttgcacccagaggctgtggagtataccggtctatccacatgtc
cgtcttgcatttaattgcaagtatacagcctcaaatattaacttctaccc
aaagcgcttcctggatccttgaattccaaagttcgctatcctagtcagtc
tgactgcttcccggctcttcggaaaccgaccagttatttaactttactta
tggaattgaaaccagaccacacacaccccagagagacgcattgggaggag
gagcccaaggggagggtgacttgggggaagaccctggtccccactttaat
ggtttgtttctgagttactccaataggtcagatttccagtcagtgtcgac
tgtggttgggcttctttactcctgagggtaaaaaaccggattctccttca
ctagctaaatttcccttttgaaggtctgttttggttttgttgttgttgtc
tttatttttcttttctttcttcctttcctttccttttcattttccagctt
tctcttctttttctatttttctccttcttttttctttgtaattttcccct
caagattttaatttattgttccctcattttcattttcttttattataaac
tttatcctttgttttcttcttcttcttcttttccttcctctcccccaagg
ctttcttatttttctctattgtgctgtgttatgtgagaaggaaaatgaca
agtttggatcccttcttattctagttgctcgggctttggagttgaccttc
tgccttcaggctcggcttcagctccctcaacaaggcgaagtgtagaacag
tcagccagcaaagggtggggcaggcctcaggagtcgccattagaagggat
gggaatggccgactcagaagcacaccttcccctactccacccccagtcag
tgccaagggctctttgatccttggaaatgctggctcaagtcctcattttc
attcaccactaaggaactttgttccacgaaaccgcaattagaagaagaac
ttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102792216_102793355
seq2: B6Ng01-194H09.g_69_1222 (reverse)

seq1  GGAAGTTCT--CTCTAATTGTGGGTCTGGTGGACCAAGTTTCTTTAGT-G  47
      |||||||||   ||||||||  ||| | ||||| |||  ||| ||||| |
seq2  GGAAGTTCTTCTTCTAATTG-CGGTTTCGTGGAACAAAGTTCCTTAGTGG  49

seq1  TG-ATG-AAATGAAGACATGGAGCCAGGCATTT-CAAGGATCAAGGAGCC  94
      || ||| |||||| ||| | |||||| |||||| |||||||||| |||||
seq2  TGAATGAAAATGAGGAC-TTGAGCCA-GCATTTCCAAGGATCAAAGAGCC  97

seq1  TTTGGCACTGACTGGGGGTGGGGTAGGGGGAGGTGTGCTTCTGAGTCGG-  143
       |||||||||||||||||||| ||||||| ||||||||||||||||||| 
seq2  CTTGGCACTGACTGGGGGTGGAGTAGGGGAAGGTGTGCTTCTGAGTCGGC  147

seq1  CATTCCCATCCC-TCTAATGGCGACT-CTGAGGCCTGCCC--ACCTTTGC  189
      |||||||||||| ||||||||||||| |||||||||||||   |||||||
seq2  CATTCCCATCCCTTCTAATGGCGACTCCTGAGGCCTGCCCCACCCTTTGC  197

seq1  TGGCTGACTGTTCTACACTTCGCCTTG-TGA-GGAGCTG-AGCCGAGCCT  236
      ||||||||||||||||||||||||||| ||| ||||||| ||||||||||
seq2  TGGCTGACTGTTCTACACTTCGCCTTGTTGAGGGAGCTGAAGCCGAGCCT  247

seq1  GAAGGCAGAAGGTCAACTCC-AAGCCCGAGCAACTAGAATAAGAA-GGAT  284
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  GAAGGCAGAAGGTCAACTCCAAAGCCCGAGCAACTAGAATAAGAAGGGAT  297

seq1  CC-AACTTGTCATTTTCCTTCTCACATAACACAGCACAATAGAGAAAAAT  333
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTGTCATTTTCCTTCTCACATAACACAGCACAATAGAGAAAAAT  347

seq1  AAGAAAGCCTTGGGGGAGAGGAAGGAAAAGAAGAAGAAGAAGAAAACAAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCCTTGGGGGAGAGGAAGGAAAAGAAGAAGAAGAAGAAAACAAA  397

seq1  GGATAAAGTTTATAATAAAAGAAAATGAAAATGAGGGAACAATAAATTAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGTTTATAATAAAAGAAAATGAAAATGAGGGAACAATAAATTAA  447

seq1  AATCTTGAGGGGAAAATTACAAAGAAAAAAGAAGGAGAAAAATAGAAAAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAGGGGAAAATTACAAAGAAAAAAGAAGGAGAAAAATAGAAAAA  497

seq1  GAAGAGAAAGCTGGAAAATGAAAAGGAAAGGAAAGGAAGAAAGAAAAGAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGCTGGAAAATGAAAAGGAAAGGAAAGGAAGAAAGAAAAGAA  547

seq1  AAATAAAGACAACAACAACAAAACCAAAACAGACCTTCAAAAGGGAAATT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGACAACAACAACAAAACCAAAACAGACCTTCAAAAGGGAAATT  597

seq1  TAGCTAGTGAAGGAGAATCCGGTTTTTTACCCTCAGGAGTAAAGAAGCCC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTGAAGGAGAATCCGGTTTTTTACCCTCAGGAGTAAAGAAGCCC  647

seq1  AACCACAGTCGACACTGACTGGAAATCTGACCTATTGGAGTAACTCAGAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGTCGACACTGACTGGAAATCTGACCTATTGGAGTAACTCAGAA  697

seq1  ACAAACCATTAAAGTGGGGACCAGGGTCTTCCCCCAAGTCACCCTCCCCT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCATTAAAGTGGGGACCAGGGTCTTCCCCCAAGTCACCCTCCCCT  747

seq1  TGGGCTCCTCCTCCCAATGCGTCTCTCTGGGGTGTGTGTGGTCTGGTTTC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCTCCTCCCAATGCGTCTCTCTGGGGTGTGTGTGGTCTGGTTTC  797

seq1  AATTCCATAAGTAAAGTTAAATAACTGGTCGGTTTCCGAAGAGCCGGGAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATAAGTAAAGTTAAATAACTGGTCGGTTTCCGAAGAGCCGGGAA  847

seq1  GCAGTCAGACTGACTAGGATAGCGAACTTTGGAATTCAAGGATCCAGGAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGACTGACTAGGATAGCGAACTTTGGAATTCAAGGATCCAGGAA  897

seq1  GCGCTTTGGGTAGAAGTTAATATTTGAGGCTGTATACTTGCAATTAAATG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTTGGGTAGAAGTTAATATTTGAGGCTGTATACTTGCAATTAAATG  947

seq1  CAAGACGGACATGTGGATAGACCGGTATACTCCACAGCCTCTGGGTGCAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACGGACATGTGGATAGACCGGTATACTCCACAGCCTCTGGGTGCAA  997

seq1  GTGTGTACGATGTCTAGATGTGAGAGCGAGTCCGCTGGCAGCCCTGCCTG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACGATGTCTAGATGTGAGAGCGAGTCCGCTGGCAGCCCTGCCTG  1047

seq1  CCAGAGTGGCAGCAGAATCCGAAGTAGAACAGAAGCCCCTTTATCCGTCC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGGCAGCAGAATCCGAAGTAGAACAGAAGCCCCTTTATCCGTCC  1097

seq1  TCAGCCTCTCACCTCTTTACCTGCTTGAACCTTTCTTCCCTGGACCTCTG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTCACCTCTTTACCTGCTTGAACCTTTCTTCCCTGGACCTCTG  1147

seq1  AGAATTC  1140
      |||||||
seq2  AGAATTC  1154