BAC Information

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BAC

Clone NameB6Ng01-195O01
Chromosome15 (Build37)
Map Location 92,796,531 - 92,950,467
singlet/doubletdoublet
Overlap geneLOC100042552
Upstream geneLOC100042529, Cntn1, Pdzrn4
Downstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195O01.bB6Ng01-195O01.g
ACCGA018175GA018176
length977698
definitionB6Ng01-195O01.b B6Ng01-195O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,796,531 - 92,797,259)(92,949,771 - 92,950,467)
sequence
gaattcaagtcaggaactgacacagaaatcatgaaagtttgctgactact
gacttgctcatgagtgaatggctcaccctgccttcttatacaatgtagaa
ctacctccccagagtaaaccacccacagttaactgggccttcccaggtgt
ctagttagggttttattgctatgaagaaactctatgaccaaggcaacttt
tataaaggacaacatttaattggggctggcttacaggttctgaggttcag
tccattatcctcatagcaggaagcatggcagcatccaaaaagatatgatg
ctggagaagaagctgagagttctacatcttgatcagaaggcagccaggag
aagattgactcttctgcactgggtggagcttgagtgctaggagccctcaa
aacccacctacacagtgacatacttcctccaacaaggccacacctcctca
tagtgtccatgagccaagcatattcaaaccatcacagcatgtcaatcaca
aatcaagaaagatgtcccatggactttcctacagagcaatttttgtttgt
ttgtttttcaagatagggtttctctgtatagccctggctgtcctggaact
cactctgtagaccaggctggccctcaaactcagatatcctcctgtctttg
cctcccaagtgctaggattaaaggcatgcaccaccactgcctggttctac
agaagaatttaatggaagcaatgcttcaggtgagataccttctgtgcaga
tatgtctagacttgtgttgtgttgagagagactcaccagcacacatgcag
aatgagaatcaaggagaaaaagagaagggagtattcaaaataccaacgta
aaaacaatcaatgtttaacacaagctatctcttgaccagaagacagagct
agacaaaaggcaaccaacatttggacactgacgaaagaagaaagaaagaa
agaaagaagaagaagaagaaagaagga

gaattcttcccagtgagcgagggacaagcaaggggcagccaatatatttc
ccccagaactggaggtacagtttgtgaggtacaccatgacatgggaatgc
cgagctctctcattcagaaatgaggaagtgtgtcaagctagcccttgatc
ttccccagtgcaatctgtacagatagacgcacaggtcgcacacctgttgg
cagctccattaatcatgtcccttgtcccaaggcctgttctaggtgacaga
ctcatttcattatcctgacagcattgtaggagagatagcatcagttaccg
ccccccccccccgcccccatcctcggttccttttgattgtgggttccatt
ttctcaatggttcaaaaagtacttgctaggtcttgggtatgaagttttgt
atattttcaaaaatgataactggacatttgggtgtgaatagggaccgagg
taggtggcagagttgtccgggagaatgctggctgctcctgctcccatgtc
acctcggacaggctccagagctgagggaggggggatgggtgacaggattg
gtccatcgcagtccatggcagtttccagaatgagcttcttatgcccctca
gccccagcccctatctttaggcgagagctctgactggctgaaaggtcccc
ggggttccccagaatgcaccctcggagatgactcacacacaatgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92796531_92797259
seq2: B6Ng01-195O01.b_340_1023

seq1  TATGATGCTGGAGAAGAAGCTGAGAGTTCTACATCTTGATCAGAAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGCTGGAGAAGAAGCTGAGAGTTCTACATCTTGATCAGAAGGCAG  50

seq1  CCAGGAGAAGATTGACTCTTCTGCACTGGGTGGAGCTTGAGTGCTAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAGATTGACTCTTCTGCACTGGGTGGAGCTTGAGTGCTAGGAG  100

seq1  CCCTCAAAACCCACCTACACAGTGACATACTTCCTCCAACAAGGCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAACCCACCTACACAGTGACATACTTCCTCCAACAAGGCCACAC  150

seq1  CTCCTCATAGTGTCCATGAGCCAAGCATATTCAAACCATCACAGCATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATAGTGTCCATGAGCCAAGCATATTCAAACCATCACAGCATGTC  200

seq1  AATCACAAATCAAGAAAGATGTCCCATGGACTTTCCTACAGAGCAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAATCAAGAAAGATGTCCCATGGACTTTCCTACAGAGCAATTTT  250

seq1  TGTTTGTTTGTTTTTCAAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTCAAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCC  300

seq1  TGGAACTCACTCTGTAGACCAGGCTGGCCCTCAAACTCAGATATCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGGCTGGCCCTCAAACTCAGATATCCTCCT  350

seq1  GTCTTTGCCTCCCAAGTGCTAGGATTAAAGGCATGCACCACCACTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCCTCCCAAGTGCTAGGATTAAAGGCATGCACCACCACTGCCTG  400

seq1  GTTCTACAGAAGAATTTAATGGAAGCAATGCTTCAGGTGAGATACCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACAGAAGAATTTAATGGAAGCAATGCTTCAGGTGAGATACCTTCT  450

seq1  GTGCAGATATGTCTAGACTTGTGTTGTGTTGAGAGAGACTCACCAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATATGTCTAGACTTGTGTTGTGTTGAGAGAGACTCACCAGCACA  500

seq1  CATGCAGAATGAGAATCAAGGAGAAAAAGAGAAGGGAGTATTCAAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAATGAGAATCAAGGAGAAAAAGAGAAGGGAGTATTCAAAATAC  550

seq1  CAACGTAAAAACAATCAATGTTTAACACAAGCTATCTCTTGACCAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTAAAAACAATCAATGTTTAACACAAGCTATCTCTTGACCAGAAGA  600

seq1  CAGAGCTAGACAAAAGGCAACCAACATTTGGACACTGACAGAAAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  CAGAGCTAGACAAAAGGCAACCAACATTTGGACACTGAC-GAAAG-AAGA  648

seq1  AAGAAAGAAAGAAAGA--AAGA--AAGAAAGAAAGAAAGAAAGAAAGAAA  696
      ||||||||||||||||  ||||  ||||||||| ||              
seq2  AAGAAAGAAAGAAAGAAGAAGAAGAAGAAAGAAGGA--------------  684

seq1  GAAGAGAGAGAGAGAGAGAGAGAGAAAGAAGGA  729
                                       
seq2  ---------------------------------  684


seq1: chr15_92949771_92950467
seq2: B6Ng01-195O01.g_64_761 (reverse)

seq1  AAGTCATTGTGTGTGTGTCTTCTCCGTGGGTGCATTCT-GGGAACCCCGG  49
      ||||||||||||||| ||| |||||| ||||||||||| |||||||||||
seq2  AAGTCATTGTGTGTGAGTCATCTCCGAGGGTGCATTCTGGGGAACCCCGG  50

seq1  GGACC-TTCAGCCAGTCAGAGCTCTCGCCTAAAGCTAGGGGCTGGGGCTG  98
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  GGACCTTTCAGCCAGTCAGAGCTCTCGCCTAAAGATAGGGGCTGGGGCTG  100

seq1  AGGGGCATAAGAAGCTCATTCTGGAAACTGCCATGGACTGCGATGGACCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATAAGAAGCTCATTCTGGAAACTGCCATGGACTGCGATGGACCA  150

seq1  ATCCTGTCACCCATCCCCCCTCCCTCAGCTCTGGAGCCTGTCCGAGGTGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCACCCATCCCCCCTCCCTCAGCTCTGGAGCCTGTCCGAGGTGA  200

seq1  CATGGGAGCAGGAGCAGCCAGCATTCTCCCGGACAACTCTGCCACCTACC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGCAGGAGCAGCCAGCATTCTCCCGGACAACTCTGCCACCTACC  250

seq1  TCGGTCCCTATTCACACCCAAATGTCCAGTTATCATTTTTGAAAATATAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCCCTATTCACACCCAAATGTCCAGTTATCATTTTTGAAAATATAC  300

seq1  AAAACTTCATACCCAAGACCTAGCAAGTACTTTTTGAACCATTGAGAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCATACCCAAGACCTAGCAAGTACTTTTTGAACCATTGAGAAAA  350

seq1  TGGAACCCACAATCAAAAGGAACCGAGGATGGGGGCGGGGGGGGGGGGGC  398
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGAACCCACAATCAAAAGGAACCGAGGATGGGGGC-GGGGGGGGGGGGC  399

seq1  GGTAACTGATGCTATCTCTCCTACAATGCTGTCAGGATAATGAAATGAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGATGCTATCTCTCCTACAATGCTGTCAGGATAATGAAATGAGT  449

seq1  CTGTCACCTAGAACAGGCCTTGGGACAAGGGACATGATTAATGGAGCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTAGAACAGGCCTTGGGACAAGGGACATGATTAATGGAGCTGC  499

seq1  CAACAGGTGTGCGACCTGTGCGTCTATCTGTACAGATTGCACTGGGGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTGTGCGACCTGTGCGTCTATCTGTACAGATTGCACTGGGGAAG  549

seq1  ATCAAGGGCTAGCTTGACACACTTCCTCATTTCTGAATGAGAGAGCTCGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGCTAGCTTGACACACTTCCTCATTTCTGAATGAGAGAGCTCGG  599

seq1  CATTCCCATGTCATGGTGTACCTCACAAACTGTACCTCCAGTTCTGGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCATGTCATGGTGTACCTCACAAACTGTACCTCCAGTTCTGGGGG  649

seq1  AAATATATTGGCTGCCCCTTGCTTGTCCCTCGCTCACTGGGAAGAATTC  697
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTGGCTGCCCCTTGCTTGTCCCTCGCTCACTGGGAAGAATTC  698


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