BAC Information

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BAC

Clone NameB6Ng01-196B05
Chromosome15 (Build37)
Map Location 10,376,616 - 10,526,033
singlet/doubletdoublet
Overlap gene4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Upstream geneCapsl, Il7r, C230086A09Rik, Prlr, Agxt2
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196B05.bB6Ng01-196B05.g
ACCGA018316GA018317
length1,108531
definitionB6Ng01-196B05.b B6Ng01-196B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,376,616 - 10,377,735)(10,525,498 - 10,526,033)
sequence
gaattcagatggcaaagtagaattcaatcactagtgaaatgtttaaaaat
atatattaaacaaaaatgtctttataagataaaaataatcttccacaatg
caatgaattgcagatcactgaaattttaactctagattatgtcagttcag
tttttggttccagatctagagacagttaaaaaaaaaaaagagttaacaga
attcctatctacttctacgcttctctttcttgttcctagttacactgttt
aaagatgctgtggctgaaggtgctcttgcatgaccagtagcctttagatg
atcaaacagtttattccgggatggaaattcactgtggcaagtcgcacagc
tgatgaggacatcactctgaggaaagaggggagaggacatcagagcacag
ggtaagctgacacaagtgttttatgacttaatgtcaaggttaaacatcaa
agaaatgcaaatctgacagctaccaaaaggcagatgttctcagaagataa
atgaacaagcactatcaactctgaaggcccagcccagactgtcaacagct
ttcactgcgcagactataaaagtctgtgcttcaaaactgatcttcacaac
ttagcacatggaactcctatccccaaggtctttcttatagtcatagaaat
gaaatagctaatttgccagtatccactatttccaattcgtctatattttt
atacactttataactaggtagagacagaattccatagagatcctagttca
ttcttggaaagctcatgggtacagactaacaccattaagacatgaacaag
gtcactgtggagcaaggtcattagggctgacctaccactggctgtgcttc
agcaggtgctttgacagattttttcacatctttgggttttctttcctttg
gatttaggaacactggaaaataaattattttatatatacaaaagtaaaaa
tcctttccagttgtcatctattcccaaaaatattcaaaatattaaatatg
aatcagctgatttattcattttatactgatttataatttcacatgtcaac
aagatcttaaaaaacaacctgagaggtaagataattttgcataaaaccaa
agatctac
ccaagggcacatgcctaaagctaggtatgttcaggagcgagtgggagaaa
aggaagggagattgtgtaggagactcggagaaaactggtgttaggaaggg
agaccgagaatgagagaagaaatgggaaaaatctaacccacaggtgagat
cttggatcagtagggtcggagagatgctgtatgggaagaatgaatgagca
gggcagcaaaaggctgactgtatctgggtcttcttcctcataaaggactg
tctgcccgcggagctccgagggcagaccttacgcatgtgtgcatcctcct
gaataactgccccttgaaagagaagagtagactcaatagtatttgtgcag
ttaccttaagatatttatttttgtctcacagtacaagagcccagcggaga
acattgacaactcggggaaaacagctttgcattatgcaggtaacggtcgt
tctctgatcattctcctgtttgtccttctctgctctaagaaagtgtttcg
ttgtccttcctgtactctggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10376616_10377735
seq2: B6Ng01-196B05.b_48_1155

seq1  GAATTCAGATGGCAAAGTAGAATTCAATCACTAGTGAAATGTTTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGGCAAAGTAGAATTCAATCACTAGTGAAATGTTTAAAAAT  50

seq1  ATATATTAAACAAAAATGTCTTTATAAGATAAAAATAATCTTCCACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAACAAAAATGTCTTTATAAGATAAAAATAATCTTCCACAATG  100

seq1  CAATGAATTGCAGATCACTGAAATTTTAACTCTAGATTATGTCAGTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATTGCAGATCACTGAAATTTTAACTCTAGATTATGTCAGTTCAG  150

seq1  TTTTTGGTTCCAGATCTAGAGACAGTTAAAAAAAAAAAAGAGTTAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTCCAGATCTAGAGACAGTTAAAAAAAAAAAAGAGTTAACAGA  200

seq1  ATTCCTATCTACTTCTACGCTTCTCTTTCTTGTTCCTAGTTACACTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTATCTACTTCTACGCTTCTCTTTCTTGTTCCTAGTTACACTGTTT  250

seq1  AAAGATGCTGTGGCTGAAGGTGCTCTTGCATGACCAGTAGCCTTTAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCTGTGGCTGAAGGTGCTCTTGCATGACCAGTAGCCTTTAGATG  300

seq1  ATCAAACAGTTTATTCCGGGATGGAAATTCACTGTGGCAAGTCGCACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGTTTATTCCGGGATGGAAATTCACTGTGGCAAGTCGCACAGC  350

seq1  TGATGAGGACATCACTCTGAGGAAAGAGGGGAGAGGACATCAGAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGGACATCACTCTGAGGAAAGAGGGGAGAGGACATCAGAGCACAG  400

seq1  GGTAAGCTGACACAAGTGTTTTATGACTTAATGTCAAGGTTAAACATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCTGACACAAGTGTTTTATGACTTAATGTCAAGGTTAAACATCAA  450

seq1  AGAAATGCAAATCTGACAGCTACCAAAAGGCAGATGTTCTCAGAAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCAAATCTGACAGCTACCAAAAGGCAGATGTTCTCAGAAGATAA  500

seq1  ATGAACAAGCACTATCAACTCTGAAGGCCCAGCCCAGACTGTCAACAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGCACTATCAACTCTGAAGGCCCAGCCCAGACTGTCAACAGCT  550

seq1  TTCACTGCGCAGACTATAAAAGTCTGTGCTTCAAAACTGATCTTCACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCGCAGACTATAAAAGTCTGTGCTTCAAAACTGATCTTCACAAC  600

seq1  TTAGCACATGGAACTCCTATCCCCAAGGTCTTTCTTATAGTCATAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACATGGAACTCCTATCCCCAAGGTCTTTCTTATAGTCATAGAAAT  650

seq1  GAAATAGCTAATTTGCCAGTATCCACTATTTCCAATTCGTCTATATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCTAATTTGCCAGTATCCACTATTTCCAATTCGTCTATATTTTT  700

seq1  ATACACTTTATAACTAGGTAGAGACAGAATTCCATAGAGATCCTAGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTTATAACTAGGTAGAGACAGAATTCCATAGAGATCCTAGTTCA  750

seq1  TTCTTGGAAAGCTCATGGGTACAGACTAACACCATTAAGACATGAACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAAAGCTCATGGGTACAGACTAACACCATTAAGACATGAACAAG  800

seq1  GTCACTGTGGAGCAAGGTCATTAGGGCTGACCTACCACTGGCTGTGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGGAGCAAGGTCATTAGGGCTGACCTACCACTGGCTGTGCTTC  850

seq1  AGCAGGTGCTTTGACAGATTTTTTCACATCTTT-GGTTTTCTTTCCTTTG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCAGGTGCTTTGACAGATTTTTTCACATCTTTGGGTTTTCTTTCCTTTG  900

seq1  GATTTAGGAACACTGGAAAATAAATTATTTTATATAATACAAAAGTAAAA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATTTAGGAACACTGGAAAATAAATTATTTTATAT-ATACAAAAGTAAAA  949

seq1  ATCCTTTCCAGTTGTCATCTATTCCCAAAAATATTCAAAATATTAAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCAGTTGTCATCTATTCCCAAAAATATTCAAAATATTAAATAT  999

seq1  GAATCAAGCTGATTTATTCATTTTAATAACTGATTTAATTAATTTTCACA  1049
      ||||| |||||||||||||||||||   |||||||||  ||| |||||||
seq2  GAATC-AGCTGATTTATTCATTTTA--TACTGATTTA--TAA-TTTCACA  1043

seq1  TGTCAACAAAGATCTTTAAAAAACAACCTGAGAGGTAAAGAATAAATTTG  1099
      ||||||| |||||| ||||||||||||||||||||| ||||   ||||| 
seq2  TGTCAAC-AAGATC-TTAAAAAACAACCTGAGAGGT-AAGA--TAATTTT  1088

seq1  GCATAAAACCAAAGAATCTAC  1120
      |||||||||||||| ||||||
seq2  GCATAAAACCAAAG-ATCTAC  1108

seq1: chr15_10525498_10526033
seq2: B6Ng01-196B05.g_64_600 (reverse)

seq1  CCCCCCCCCCCCCAGAGTACAGGAAGGACAACGAAACACTTTCTTAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCAGAGTACAGGAAGGACAACGAAACACTTTCTTAGAGC  50

seq1  AGAGAAGGACAAACAGGAGAATGATCAGAGAACGACCGTTACCTGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGACAAACAGGAGAATGATCAGAGAACGACCGTTACCTGCATAA  100

seq1  TGCAAAGCTGTTTTCCCCGAGTTGTCAATGTTCTCCGCTGGGCTCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCTGTTTTCCCCGAGTTGTCAATGTTCTCCGCTGGGCTCTTGTA  150

seq1  CTGTGAGACAAAAATAAATATCTTAAGGTAACTGCACAAATACTATTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGACAAAAATAAATATCTTAAGGTAACTGCACAAATACTATTGAG  200

seq1  TCTACTCTTCTCTTTCAAGGGGCAGTTATTCAGGAGGATGCACACATGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTTCTCTTTCAAGGGGCAGTTATTCAGGAGGATGCACACATGCG  250

seq1  TAAGGTCTGCCCTCGGAGCTCCGCGGGCAGACAGTCCTTTATGAGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCTGCCCTCGGAGCTCCGCGGGCAGACAGTCCTTTATGAGGAAGA  300

seq1  AGACCCAGATACAGTCAGCCTTTTGCTGCCCTGCTCATTCATTCTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGATACAGTCAGCCTTTTGCTGCCCTGCTCATTCATTCTTCCCA  350

seq1  TACAGCATCTCTCCGACCCTACTGATCCAAGATCTCACCTGTGGGTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATCTCTCCGACCCTACTGATCCAAGATCTCACCTGTGGGTTAGA  400

seq1  TTTTTCCCATTTCTTCTCTCATTCTCGGTCTCCCTTCCTAACACCAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCATTTCTTCTCTCATTCTCGGTCTCCCTTCCTAACACCAGTTT  450

seq1  TCTCCGAGTCTCCTACACAATCTCCCTTCCTTTTCTCCCACTCGCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGAGTCTCCTACACAATCTCCCTTCCTTTTCTCCCACTCGCTCCTG  500

seq1  AACATACCTAGC-TCAGGCATGTGCCCTTGGGAATTC  536
      |||||||||||| | ||||||||||||||||||||||
seq2  AACATACCTAGCTTTAGGCATGTGCCCTTGGGAATTC  537