BAC Information

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BAC

Clone NameB6Ng01-198J14
Chromosome15 (Build37)
Map Location 29,000,797 - 29,175,841
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198J14.bB6Ng01-198J14.g
ACCGA020153GA020154
length1,1971,069
definitionB6Ng01-198J14.b B6Ng01-198J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,174,638 - 29,175,841)(29,000,797 - 29,001,869)
sequence
gaattctgggagggggtgactgggaggaggcagtgagtggaatgtaaagt
gaataagtaaaaatagtattaataataattaaattaaaaacaaaacaaaa
taaaacaaaacaaaacaaaatactctgagacaacctgaggtactagtggt
ctggaagggtaagaagcaaggaggctcacactgttaacccttggaggaga
gtactccagagaactccttcatttgttctatttgattcaggtatgtgcca
gaatagcagactgtgtagtggcaaccaattcctaagagtaacttctaacc
agtgctttccttggatgaggaagcaggcatttaatattctttattcctgt
attttgcatggaaagtaggctctttacatatttctcactgcagaagaaca
taatgcagtactttcaagataggctgtatgacccaaagcttttagctctt
atggtccattttcaggttgggtgaacaacgccgtccttatgcacagagct
ttattgaccatgaattgactgaaattgactagtaatgactgtttaaagta
aggcaggagataagagaaatgcagatgactgagttcctccaactgcagtg
gtagatataccaagagcaagaaactaccaactgagaagtttaaaagaaaa
cagcactgaaatgtgcatttatatattgctttgaatctaaaagcaggaca
catgaaaattttgtactgtttctattgaaagtttctggaatagagccatg
ggaaaattgtttacattagttaactagaattcatttgccaaatactccag
tattcatcaaaatgactctaatacatggttcattaagaaattatttgata
gtacatttttcttatttaataagctttctttaatattttacagagttaaa
atcatggcacattttatattctgtattcagaatgtaagactaaaaacttt
ccctaaatagaacatagaacttagtgataaatgattaaagaaaatcaaca
tcacaaacacattttaattccatttttatctatgagaacagtaaaaataa
tgactagtatactagaatattcacgttgcatttttctaatagtattataa
ctatgattcaattaattcttttggatgcgtacaatacagcagctcattat
agtacgtaatggctatatttaaaagcttttttcaactgaattataac

gaattcttaaagaacttcacttttatgtatggaggctctcagatggtatt
gagatcatttgactccaacttaaaattgcttgtccttctcctaagatgtg
tccagcttccttcatctaatccttactcttttttccacttttctaatatc
aataattaattaataattaatattttctacatttcttgatctgaaacttg
ctctataccaggttggtcttgaactcagagatctccttgccagtgcctct
ttggattaaaggaatgcctgtattccagttgtatcacataggtctagaag
gtctttgcatgtgatcctttgccagagcagctggattaaaaatcatctac
atgatcactgtgctatttataaattgtgacgactttaaaatacgtctgtc
ttcttagtcctgggcaccaaaagaacatgttcaggaacaagtttgccctt
actaaaatgtgatgttcttaacttacacaaatgtttatttgtggagttcc
agaattaaggcatgatgatcactggaaacttcagcaatgccttctgtcat
gagtgtgtctttttgttcttctattttttgagtggtaagggctgacaagc
tgacagttttaatacagtggttttagcagcttagttttttgggggaataa
attactacaggatgttttagacatcaaaaggtaccccttcataaaaagta
aacacttcttcactttaccttttgtatgagacaaaatataacaagcttgt
gttctcttttaagttgcagtttttattgcagctatctaaagtgaggtgaa
cccatcccatattttgtaataaaaacactagagagtcctcagttttaatg
atgagattagaaatgtttcttactgtgtattctgcatatcccaatttcag
aacaaaataatgtccgtgctcctactggtatttagttgaaatatatgaac
atctggtgtttgatcttttatttattgattaaaatctcaccattatcaga
gataatatgtataaagcaagcattcatgtatattcaatagaaaattggta
atcaatttgtttcacattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29174638_29175841
seq2: B6Ng01-198J14.b_46_1242 (reverse)

seq1  GTTATATTTCAGTTGAAAAAAAGGTTTTTAAATAT-GCCATTAATTTGTA  49
      |||||| ||||||||||||||  | |||||||||| |||||||    |||
seq2  GTTATAATTCAGTTGAAAAAA--GCTTTTAAATATAGCCATTA---CGTA  45

seq1  CTAATAAATGAGCTGCTGTATGTTACCGCAT-CAAAAGAATTTATTGAAT  98
      |||   |||||||||||||||  || ||||| |||||||||| |||||||
seq2  CTA--TAATGAGCTGCTGTATTGTA-CGCATCCAAAAGAATTAATTGAAT  92

seq1  CATAGTTATAAATACTATTAG-AAAATGCAAACGTGAATATTCTAGTATA  147
      ||||||||| ||||||||||| ||||||| ||||||||||||||||||||
seq2  CATAGTTAT-AATACTATTAGAAAAATGC-AACGTGAATATTCTAGTATA  140

seq1  CTAGTCATTA-TTTTACTGTTCTCATAGAT-AAAATGGAATTAAAATGTT  195
      |||||||||| ||||||||||||||||||| |||||||||||||||||| 
seq2  CTAGTCATTATTTTTACTGTTCTCATAGATAAAAATGGAATTAAAATGT-  189

seq1  GTTTTGTGATGTTGATTTTCTTTAATCATTTATCACCTAAGTTCTATGTT  245
        ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -GTTTGTGATGTTGATTTTCTTTAATCATTTATCA-CTAAGTTCTATGTT  237

seq1  CTATTTAGGGAAAGTTTTTAGTCTTACATTCTGAATACAGAATAT-AAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATTTAGGGAAAGTTTTTAGTCTTACATTCTGAATACAGAATATAAAAT  287

seq1  GTGCCATGATTTTAACTCTGTAAAATATTAAAGAAAGCTTATTAAATAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATGATTTTAACTCTGTAAAATATTAAAGAAAGCTTATTAAATAAG  337

seq1  AAAAATGTACTATCAAATAATTTCTTAATGAACCATGTATTAGAGTCATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTACTATCAAATAATTTCTTAATGAACCATGTATTAGAGTCATT  387

seq1  TTGATGAATACTGGAGTATTTGGCAAATGAATTCTAGTTAACTAATGTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAATACTGGAGTATTTGGCAAATGAATTCTAGTTAACTAATGTAA  437

seq1  ACAATTTTCCCATGGCTCTATTCCAGAAACTTTCAATAGAAACAGTACAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTCCCATGGCTCTATTCCAGAAACTTTCAATAGAAACAGTACAA  487

seq1  AATTTTCATGTGTCCTGCTTTTAGATTCAAAGCAATATATAAATGCACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATGTGTCCTGCTTTTAGATTCAAAGCAATATATAAATGCACAT  537

seq1  TTCAGTGCTGTTTTCTTTTAAACTTCTCAGTTGGTAGTTTCTTGCTCTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTGTTTTCTTTTAAACTTCTCAGTTGGTAGTTTCTTGCTCTTG  587

seq1  GTATATCTACCACTGCAGTTGGAGGAACTCAGTCATCTGCATTTCTCTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTACCACTGCAGTTGGAGGAACTCAGTCATCTGCATTTCTCTTA  637

seq1  TCTCCTGCCTTACTTTAAACAGTCATTACTAGTCAATTTCAGTCAATTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCTTACTTTAAACAGTCATTACTAGTCAATTTCAGTCAATTCA  687

seq1  TGGTCAATAAAGCTCTGTGCATAAGGACGGCGTTGTTCACCCAACCTGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAATAAAGCTCTGTGCATAAGGACGGCGTTGTTCACCCAACCTGAA  737

seq1  AATGGACCATAAGAGCTAAAAGCTTTGGGTCATACAGCCTATCTTGAAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACCATAAGAGCTAAAAGCTTTGGGTCATACAGCCTATCTTGAAAG  787

seq1  TACTGCATTATGTTCTTCTGCAGTGAGAAATATGTAAAGAGCCTACTTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATTATGTTCTTCTGCAGTGAGAAATATGTAAAGAGCCTACTTTC  837

seq1  CATGCAAAATACAGGAATAAAGAATATTAAATGCCTGCTTCCTCATCCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAATACAGGAATAAAGAATATTAAATGCCTGCTTCCTCATCCAA  887

seq1  GGAAAGCACTGGTTAGAAGTTACTCTTAGGAATTGGTTGCCACTACACAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCACTGGTTAGAAGTTACTCTTAGGAATTGGTTGCCACTACACAG  937

seq1  TCTGCTATTCTGGCACATACCTGAATCAAATAGAACAAATGAAGGAGTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATTCTGGCACATACCTGAATCAAATAGAACAAATGAAGGAGTTC  987

seq1  TCTGGAGTACTCTCCTCCAAGGGTTAACAGTGTGAGCCTCCTTGCTTCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTACTCTCCTCCAAGGGTTAACAGTGTGAGCCTCCTTGCTTCTT  1037

seq1  ACCCTTCCAGACCACTAGTACCTCAGGTTGTCTCAGAGTATTTTGTTTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCAGACCACTAGTACCTCAGGTTGTCTCAGAGTATTTTGTTTTG  1087

seq1  TTTTGTTTTATTTTGTTTTGTTTTTAATTTAATTATTATTAATACTATTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATTTTGTTTTGTTTTTAATTTAATTATTATTAATACTATTT  1137

seq1  TTACTTATTCACTTTACATTCCACTCACTGCCTCCTCCCAGTCACCCCCT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATTCACTTTACATTCCACTCACTGCCTCCTCCCAGTCACCCCCT  1187

seq1  CCCAGAATTC  1204
      ||||||||||
seq2  CCCAGAATTC  1197


seq1: chr15_29000797_29001869
seq2: B6Ng01-198J14.g_65_1133

seq1  GAATTCTTAAAGAACTTCACTTTTATGTATGGAGGCTCTCAGATGGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAGAACTTCACTTTTATGTATGGAGGCTCTCAGATGGTATT  50

seq1  GAGATCATTTGACTCCAACTTAAAATTGCTTGTCCTTCTCCTAAGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATTTGACTCCAACTTAAAATTGCTTGTCCTTCTCCTAAGATGTG  100

seq1  TCCAGCTTCCTTCATCTAATCCTTACTCTTTTTTCCACTTTTCTAATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCCTTCATCTAATCCTTACTCTTTTTTCCACTTTTCTAATATC  150

seq1  AATAATTAATTAATAATTAATATTTTCTACATTTCTTGATCTGAAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAATTAATAATTAATATTTTCTACATTTCTTGATCTGAAACTTG  200

seq1  CTCTATACCAGGTTGGTCTTGAACTCAGAGATCTCCTTGCCAGTGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATACCAGGTTGGTCTTGAACTCAGAGATCTCCTTGCCAGTGCCTCT  250

seq1  TTGGATTAAAGGAATGCCTGTATTCCAGTTGTATCACATAGGTCTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTAAAGGAATGCCTGTATTCCAGTTGTATCACATAGGTCTAGAAG  300

seq1  GTCTTTGCATGTGATCCTTTGCCAGAGCAGCTGGATTAAAAATCATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCATGTGATCCTTTGCCAGAGCAGCTGGATTAAAAATCATCTAC  350

seq1  ATGATCACTGTGCTATTTATAAATTGTGACGACTTTAAAATACGTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACTGTGCTATTTATAAATTGTGACGACTTTAAAATACGTCTGTC  400

seq1  TTCTTAGTCCTGGGCACCAAAAGAACATGTTCAGGAACAAGTTTGCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTCCTGGGCACCAAAAGAACATGTTCAGGAACAAGTTTGCCCTT  450

seq1  ACTAAAATGTGATGTTCTTAACTTACACAAATGTTTATTTGTGGAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATGTGATGTTCTTAACTTACACAAATGTTTATTTGTGGAGTTCC  500

seq1  AGAATTAAGGCATGATGATCACTGGAAACTTCAGCAATGCCTTCTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAGGCATGATGATCACTGGAAACTTCAGCAATGCCTTCTGTCAT  550

seq1  GAGTGTGTCTTTTTGTTCTTCTATTTTTTGAGTGGTAAGGGCTGACAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTCTTTTTGTTCTTCTATTTTTTGAGTGGTAAGGGCTGACAAGC  600

seq1  TGACAGTTTTAATACAGTGGTTTTAGCAGCTTAGTTTTTTGGGGGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTTAATACAGTGGTTTTAGCAGCTTAGTTTTTTGGGGGAATAA  650

seq1  ATTACTACAGGATGTTTTAGACATCAAAAGGTACCCCTTCATAAAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTACAGGATGTTTTAGACATCAAAAGGTACCCCTTCATAAAAAGTA  700

seq1  AACACTTCTTCACTTTACCTTTTGTATGAGACAAAATATAACAAGCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCTTCACTTTACCTTTTGTATGAGACAAAATATAACAAGCTTGT  750

seq1  GTTCTCTTTTAAGTTGCAGTTTTTATTGCAGCTATCTAAAGTGAGGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTTAAGTTGCAGTTTTTATTGCAGCTATCTAAAGTGAGGTGAA  800

seq1  CCCATCCCATATTTTGTAATAAAAACACTAGAGAGTCCTCAGTTTTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCATATTTTGTAATAAAAACACTAGAGAGTCCTCAGTTTTAATG  850

seq1  ATGAGATTAGAAATGTTTCTTACTGTGTATTCTGCATATCCCAATTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTAGAAATGTTTCTTACTGTGTATTCTGCATATCCCAATTTCAG  900

seq1  AACAAAATAATGTCCGTGCTCCTACTGGTATTTAGTTGAAATATATGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATAATGTCCGTGCTCCTACTGGTATTTAGTTGAAATATATGAAC  950

seq1  ATCTGGTGTTTGATCTTTTATTTAATTTGATTAAAATCTCACCATTATCA  1000
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  ATCTGGTGTTTGATCTTTTATTTA--TTGATTAAAATCTCACCATTATCA  998

seq1  GAGATAATATGTATAAAGCAAGCATTTAATGTATAATCAATAGAAAATGG  1050
      |||||||||||||||||||||||| || ||||||| |||||||||||| |
seq2  GAGATAATATGTATAAAGCAAGCA-TTCATGTATATTCAATAGAAAATTG  1047

seq1  TAAACCAATTTTGTTTCACATTG  1073
        || ||| ||||||||||||||
seq2  GTAATCAA-TTTGTTTCACATTG  1069


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