BAC Information

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BAC

Clone NameB6Ng01-198K11
Chromosome15 (Build37)
Map Location 71,201,844 - 71,354,646
singlet/doubletdoublet
Overlap gene1700010C24Rik
Upstream geneLOC383051
Downstream geneLOC100040847, Col22a1, Kcnk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198K11.bB6Ng01-198K11.g
ACCGA020194GA020195
length1,1401,125
definitionB6Ng01-198K11.b B6Ng01-198K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,201,844 - 71,202,986)(71,353,543 - 71,354,646)
sequence
gaattcccaggttgaatatcccccatgaaatgttgcataatgcatgggca
ggtgcatagtgaactattaacagatgcctcctctctttttctatattgaa
aataaataatagtattaataaaatgagaccacaaaatatagaaaacaaca
attcttgaattttgatgttgtagtgtctatttcattagcatgtctttagc
ataaaaaatctgtgagtttagaaattaattgctccaatttcagttaaaaa
ccaaatctacttctgattttttcaggactcctgagtaaagcccatgcttt
tctttgtgatcagtacttgggcgtgtttgtagctctcattttgtatgtcc
agcttcatctcacaaatcctcaggatttaatcatactttaaattcatttt
gtaagatattttggaaacagacacacaggtagttccaacttttgctgcca
tcttccaagtcagagattacagcactacacatccacaccaagctcagagt
tcatcttcagtgtaaatcatcttcacattatgccttcagtaaaataatta
ttacattctttgacttacaatttcttttcaaatgtcttattggtggaccc
tgtagaatttgtcttcccacctcattctcattgttatgtctcttactact
tttctgccttttatatctctagctatatcagcaaaagtaagaactatgta
agaaaagttgatgtacccttttctacaacctcatctccaggggcagtttc
tgttccctgtctccataatgctatattaaatgctactggagggttgtgct
ttagactgtgtttttttaattaggtttttatttaaatgtttgcatttttc
taaatacatccactgtgatccatttacttctgggatgatcattttcctcg
gaacaccctttttcttctttgcataagaggctccatttccagagaaagga
caggggtggagaagagtgagagtacgttgtgcactgaattcttcttttct
tcagccatagactcaggttgaattatcagagattctatgttaaaataaaa
aaatgttgtcatcagtttcagagacttgttatcaccagtgcattctgggg
ggtggtgctatctatactaaagggtgtcacctctctagag
gaattcagaggagcagacagccagggaatagcacttgtgagcatggagct
aaaagccagggtcacaaaggtcatagccttctggatctactggtcttctg
ccccaaactttgttggctcctagattaaaggtcctggattggggggaaag
gacagacatgtatcaggagtctctagtttccattcacttctaatgagtgt
gtaaagaggaatcaagacacacacacacacacacacacacacacacacac
acaccacaccacacaccacacacacacaccacacacacacaccacacaca
cacaccacacacacataccacacacacacagagttagtctgcaaagcaca
caccaagttctaagaacagacttttcctctagagagtctagagctctgat
ataggtatgctgaattagatagggtgttagagcagaatgttatagaaatg
ctatgatataggaatatgggaaagcacccctgaccttgggaaactaacac
tctagaaatagaaagaaaagcactagtctcctgcaaggcacattcccagc
tgggtgatttccttgaatcaggaaacactgcttctgggaacgtctcaggg
tgggttctgtgtgccaagggtgagacagagcaggtgtgccctgaggtcag
tagagactgctccgatggaggctcagaacagtctagataggaaaggaagt
gaccttaaggagtttctgggtcccagagtcaggagcatctggttgcttaa
ttccatcacttactggggggatctttgaatagcttatccacgtctctaaa
tatatcttttaccatatagacacataaatttacatataaaacaaagggat
tttttgtgataaccgaagcaacagagattatgtctatatataataaaact
catggtagactgtctcacataatgatacacacatacacacacacactttt
cttgaagcaaattctagcataatagaaaactagcagttcctgagaagcat
gtatcgttgactataaggagactttgagtcttgttaagccattccagggt
attccagggtgcctcagcttccaactgaatgcttgtgcaaggtcgtgggg
tagcctggataggtggggtgttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_71201844_71202986
seq2: B6Ng01-198K11.b_44_1183

seq1  GAATTCCCAGGTTGAATATCCCCCATGAAATGTTGCATAATGCATGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGTTGAATATCCCCCATGAAATGTTGCATAATGCATGGGCA  50

seq1  GGTGCATAGTGAACTATTAACAGATGCCTCCTCTCTTTTTCTATATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATAGTGAACTATTAACAGATGCCTCCTCTCTTTTTCTATATTGAA  100

seq1  AATAAATAATAGTATTAATAAAATGAGACCACAAAATATAGAAAACAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATAGTATTAATAAAATGAGACCACAAAATATAGAAAACAACA  150

seq1  ATTCTTGAATTTTGATGTTGTAGTGTCTATTTCATTAGCATGTCTTTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAATTTTGATGTTGTAGTGTCTATTTCATTAGCATGTCTTTAGC  200

seq1  ATAAAAAATCTGTGAGTTTAGAAATTAATTGCTCCAATTTCAGTTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATCTGTGAGTTTAGAAATTAATTGCTCCAATTTCAGTTAAAAA  250

seq1  CCAAATCTACTTCTGATTTTTTCAGGACTCCTGAGTAAAGCCCATGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTACTTCTGATTTTTTCAGGACTCCTGAGTAAAGCCCATGCTTT  300

seq1  TCTTTGTGATCAGTACTTGGGCGTGTTTGTAGCTCTCATTTTGTATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGATCAGTACTTGGGCGTGTTTGTAGCTCTCATTTTGTATGTCC  350

seq1  AGCTTCATCTCACAAATCCTCAGGATTTAATCATACTTTAAATTCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATCTCACAAATCCTCAGGATTTAATCATACTTTAAATTCATTTT  400

seq1  GTAAGATATTTTGGAAACAGACACACAGGTAGTTCCAACTTTTGCTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATATTTTGGAAACAGACACACAGGTAGTTCCAACTTTTGCTGCCA  450

seq1  TCTTCCAAGTCAGAGATTACAGCACTACACATCCACACCAAGCTCAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAGTCAGAGATTACAGCACTACACATCCACACCAAGCTCAGAGT  500

seq1  TCATCTTCAGTGTAAATCATCTTCACATTATGCCTTCAGTAAAATAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCAGTGTAAATCATCTTCACATTATGCCTTCAGTAAAATAATTA  550

seq1  TTACATTCTTTGACTTACAATTTCTTTTCAAATGTCTTATTGGTGGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCTTTGACTTACAATTTCTTTTCAAATGTCTTATTGGTGGACCC  600

seq1  TGTAGAATTTGTCTTCCCACCTCATTCTCATTGTTATGTCTCTTACTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATTTGTCTTCCCACCTCATTCTCATTGTTATGTCTCTTACTACT  650

seq1  TTTCTGCCTTTTATATCTCTAGCTATATCAGCAAAAGTAAGAACTATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCTTTTATATCTCTAGCTATATCAGCAAAAGTAAGAACTATGTA  700

seq1  AGAAAAGTTGATGTACCCTTTTCTACAACCTCATCTCCAGGGGCAGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTGATGTACCCTTTTCTACAACCTCATCTCCAGGGGCAGTTTC  750

seq1  TGTTCCCTGTCTCCATAATGCTATATTAAATGCTACTGGAGGGTTGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTGTCTCCATAATGCTATATTAAATGCTACTGGAGGGTTGTGCT  800

seq1  TTAGACTGTGTTTTTTTAATTAGGTTTTTATTTAAATGTTTGCATTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGTGTTTTTTTAATTAGGTTTTTATTTAAATGTTTGCATTTTTC  850

seq1  TAAATACATCCACTGTGATCCATTTACTTCTGGGATGATCATTTTCCTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATCCACTGTGATCCATTTACTTCTGGGATGATCATTTTCCTCG  900

seq1  GAACACCCTTTTTCTTCTTTGCATAAGAGGCTCCATTTCCAGAGAAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCTTTTTCTTCTTTGCATAAGAGGCTCCATTTCCAGAGAAAGGA  950

seq1  CAGGGGTGGAGAAGAGTGAGAGTACGTTGTTGCACTGAATTTCTTC-TTT  999
      ||||||||||||||||||||||||||||| ||||||||| |||||| |||
seq2  CAGGGGTGGAGAAGAGTGAGAGTACGTTG-TGCACTGAA-TTCTTCTTTT  998

seq1  CTTCAGCCATAAGACTCAGGGTGAATTATCAGGAGATTCTATGTTTAAAA  1049
      |||||||||| ||||||||| |||||||||| ||||||||||||| ||| 
seq2  CTTCAGCCAT-AGACTCAGGTTGAATTATCA-GAGATTCTATGTTAAAAT  1046

seq1  TAAAAAATG-TGTCATTCAGTTTTCAGAAGAACTGTATTCACCAGTGCCA  1098
       |||||||| ||||| |||| |||||| |||  |||  ||||||||||  
seq2  AAAAAAATGTTGTCA-TCAG-TTTCAG-AGACTTGTTATCACCAGTGCAT  1093

seq1  TCTGGGG---TGTGCCATCTATACCTAAAAGGGTGTCACCTCT-TAGAG  1143
      |||||||    |||| ||||||||   |||||||||||||||| |||||
seq2  TCTGGGGGGTGGTGCTATCTATAC--TAAAGGGTGTCACCTCTCTAGAG  1140

seq1: chr15_71353543_71354646
seq2: B6Ng01-198K11.g_64_1188 (reverse)

seq1  TGTAACACCCACCCTACTCAGGCTTCCCCACGACTTTGCAC-AGCACTCA  49
      ||||||||||  ||||  |||||| ||||||||| |||||| |||| |||
seq2  TGTAACACCCCACCTATCCAGGCTACCCCACGACCTTGCACAAGCATTCA  50

seq1  GTTTGGAAGCTGA-GCA-CCTGG-ATA-CCTGG-ATGGCTTA--CAGACT  92
      | ||||||||||| ||| ||||| ||| ||||| ||||||||   |||||
seq2  G-TTGGAAGCTGAGGCACCCTGGAATACCCTGGAATGGCTTAACAAGACT  99

seq1  C-AAGTCT-CTTATAGTC-ACGATACATGC-TCTCA-GAACTGCTAG-TT  136
      | |||||| ||||||||| ||||||||||| ||||| |||||||||| ||
seq2  CAAAGTCTCCTTATAGTCAACGATACATGCTTCTCAGGAACTGCTAGTTT  149

seq1  TCTATATTGCTAGAA-TTGCTTCAAG-AAAGTGTGTGTGTGTATGTGTGT  184
      |||||  |||||||| |||||||||| |||||||||||||||||||||||
seq2  TCTATTATGCTAGAATTTGCTTCAAGAAAAGTGTGTGTGTGTATGTGTGT  199

seq1  ATTCATTATGTGAGACAGTCTA-CATG-GTTTTATTATATATAGACATAA  232
      | |||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  A-TCATTATGTGAGACAGTCTACCATGAGTTTTATTATATATAGACATAA  248

seq1  TCTCTGTTGCTTC-GTTATCACAAAAA--TCCTTTGTTTTATATGTAAAT  279
      ||||||||||||| |||||||||||||   ||||||||||||||||||||
seq2  TCTCTGTTGCTTCGGTTATCACAAAAAATCCCTTTGTTTTATATGTAAAT  298

seq1  TTATGTGTCTATATGGTAAAAGATATATTTAGAGACGTGGATAAGCTATT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTCTATATGGTAAAAGATATATTTAGAGACGTGGATAAGCTATT  348

seq1  CAAAGAT-CCCCCAGTAAGTGATGGAATTAAGCAACCAGATGCTCCTGAC  378
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCCCCCCAGTAAGTGATGGAATTAAGCAACCAGATGCTCCTGAC  398

seq1  TCTGGGACCCAG-AACTCCTTAAGGTCACTTCCTTTCCTATCTAGACTGT  427
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACCCAGAAACTCCTTAAGGTCACTTCCTTTCCTATCTAGACTGT  448

seq1  TCTGAGCCTCCATCGGAGCAGTCTCTACTGACCTCAGGGCACACCTGCTC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTCCATCGGAGCAGTCTCTACTGACCTCAGGGCACACCTGCTC  498

seq1  TGTCTCACCCTTGGCACACAGAACCCACCCTGAGACGTTCCCAGAAGCAG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACCCTTGGCACACAGAACCCACCCTGAGACGTTCCCAGAAGCAG  548

seq1  TGTTTCCTGATTCAAGGAAATCACCCAGCTGGGAATGTGCCTTGCAGGAG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGATTCAAGGAAATCACCCAGCTGGGAATGTGCCTTGCAGGAG  598

seq1  ACTAGTGCTTTTCTTTCTATTTCTAGAGTGTTAGTTTCCCAAGGTCAGGG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGCTTTTCTTTCTATTTCTAGAGTGTTAGTTTCCCAAGGTCAGGG  648

seq1  GTGCTTTCCCATATTCCTATATCATAGCATTTCTATAACATTCTGCTCTA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCCCATATTCCTATATCATAGCATTTCTATAACATTCTGCTCTA  698

seq1  ACACCCTATCTAATTCAGCATACCTATATCAGAGCTCTAGACTCTCTAGA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTATCTAATTCAGCATACCTATATCAGAGCTCTAGACTCTCTAGA  748

seq1  GGAAAAGTCTGTTCTTAGAACTTGGTGTGTGCTTTGCAGACTAACTCTGT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTCTGTTCTTAGAACTTGGTGTGTGCTTTGCAGACTAACTCTGT  798

seq1  GTGTGTGTGGTATGTGTGTGTGGTGTGTGTGTGTGGTGTGTGTGTGTGGT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGTATGTGTGTGTGGTGTGTGTGTGTGGTGTGTGTGTGTGGT  848

seq1  GTGTGTGTGTGGTGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTG  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGGTGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTG  898

seq1  TGTGTGTGTGTCTTGATTCCTCTTTACACACTCATTAGAAGTGAATGGAA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTCTTGATTCCTCTTTACACACTCATTAGAAGTGAATGGAA  948

seq1  ACTAGAGACTCCTGATACATGTCTGTCCTTTCCCCCCAATCCAGGACCTT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGACTCCTGATACATGTCTGTCCTTTCCCCCCAATCCAGGACCTT  998

seq1  TAATCTAGGAGCCAACAAAGTTTGGGGCAGAAGACCAGTAGATCCAGAAG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGGAGCCAACAAAGTTTGGGGCAGAAGACCAGTAGATCCAGAAG  1048

seq1  GCTATGACCTTTGTGACCCTGGCTTTTAGCTCCATGCTCACAAGTGCTAT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGACCTTTGTGACCCTGGCTTTTAGCTCCATGCTCACAAGTGCTAT  1098

seq1  TCCCTGGCTGTCTGCTCCTCTGAATTC  1104
      |||||||||||||||||||||||||||
seq2  TCCCTGGCTGTCTGCTCCTCTGAATTC  1125