BAC Information

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BAC

Clone NameB6Ng01-199F13
Chromosome15 (Build37)
Map Location 84,222,962 - 84,373,974
singlet/doubletdoublet
Overlap gene1810041L15Rik
Upstream genePacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988
Downstream geneLdoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199F13.bB6Ng01-199F13.g
ACCGA020702GA020703
length1,004848
definitionB6Ng01-199F13.b B6Ng01-199F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,372,972 - 84,373,974)(84,222,962 - 84,223,806)
sequence
gaattcagcaactcagagaaaatggtaacacaatgctggcatgttcctta
tttctggtgagcagcaagtggactatggaaagaatttgtgtgtgatgatg
cccagtcccagggaacatacctagactttgaggatggctaacagttgcca
tgctaacccagtctttatgacagtccctctacacctgtcagctgaaggtg
gtgcagtcccagtgaaccacttgcctctctttcagggggcttgggacaca
cagttttgaatccgtggggtctctgtggctcaaaaaaatgatgagctggg
agctgacagagtgtggcgtcgttgctaggttaggagtgacagtcttgact
gactgtctatatcctaagcctcctctggcattttaaaaacaagaaaagaa
ggaaaaataactcctgctattcttgattcatacttctgtcacttttaaat
atttgcaagttgtccctcgtcactgtggcttttcaaatatgtcccttgct
atttatgcccacttggtactttttgtgagcttaccatttcttgacttgtt
ctatttagaggtgtggcccgtgcttgcgggtgaaaagagaaacctgtgga
attattgcagggtcttccactgacctagagaagatgtgatggttttaaca
tatgagttttccttcttagtttgaagtaaaactacttaagtaccaaataa
tccacacgtaatacctattaagcatccaagcaatgccaaaacgatacaga
gtgaaacacggaagtagctattactccctttgaacttcctgctggtttga
aaatgatttgctcccagcaaagctcctggtggatgttggtgctggcgtcc
catgcagccctgcggggagatggcagatttcttcggaggcgattagaaag
ggattaatggtgttctttcaggaccagattcatgaccaccagggctggct
gttgcagagcagtttagttctctcactctctctctcttctcttctcttct
ctct
gaattctctgctatgtgtggcagcattgaaaattggctcctgggagacct
gacctggtcctcagctcagtggggcctgagcgggaagttggttggtgctg
gggaattggtgactgggggacatccagaaagccatagcagatcaagtaag
agagacaatagctactacagaccttgactctagatgaaggtccttggacc
ccatcccatggccctgggattctagaaaattctgtgaaaggcaagttagg
gctgggctaggccttctcagagtgctttcacctctgctctccatcttcaa
gagcccactttcaaattttactaggaaaggacttggactctgaggagaca
ggtgatttgcccaggatcaatgtccagccagtgctagggtttgcagtctg
gcctgtgccactaaccattgagcaacactgcctccagtctacacctgagc
caggccggggtggggagacagtagaggaggagttgtgcagctggcaggca
ggcaggcaggctaggccagcgtctgcagcctgtttgagatgagatagagc
acctggcaatttgaatagtaatgaatgcttccagaatgccaggcaagtct
ggaacaataacagcaaaggagagatgaaagccttctgcctaactgcaggt
gaagtgtggacacggctcctgggatgacaatggctcatagccacttagcg
ccggctggatgccgggccggggcaggaccgtgacacatttcctggggtgt
tctcccagcaaccctgtggtttgggacagcatttagcacatttttacaag
ggagcaaaagacagggatgctgagagaacccatggggtggtggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84372972_84373974
seq2: B6Ng01-199F13.b_44_1047 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACT-AACTGCT  49
      ||||||| ||||| ||||| |||||||||||| ||||||||| |||||||
seq2  AGAGAGA-AGAGA-AGAGA-AGAGAGAGAGAGTGAGAGAACTAAACTGCT  47

seq1  CTGCAACAGCCAGCCCTGGTGGTCATGAATCTGGTCCTGAAAGAACACCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACAGCCAGCCCTGGTGGTCATGAATCTGGTCCTGAAAGAACACCA  97

seq1  TTAATCCC-TTCTAATCGCCTCCGAAG-AATCTGCCATCTCCCCGCAGGG  147
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TTAATCCCTTTCTAATCGCCTCCGAAGAAATCTGCCATCTCCCCGCAGGG  147

seq1  CTGCATGGGACGCCAGCACCAACATCCACCAGGAGCTTTGCTGGGAGCAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGGACGCCAGCACCAACATCCACCAGGAGCTTTGCTGGGAGCAA  197

seq1  ATCATTTTCAAACCAGCAGGAAGTTC-AAGGGAGTAATAGCTACTTCCGT  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCATTTTCAAACCAGCAGGAAGTTCAAAGGGAGTAATAGCTACTTCCGT  247

seq1  GTTTCACTCTGTATCGTTTTGGCATTGCTTGGATGCTTAATAGGTATTAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTCTGTATCGTTTTGGCATTGCTTGGATGCTTAATAGGTATTAC  297

seq1  GTGTGGATTATTTGGTACTTAAGTAGTTTTACTTCAAACTAAGAAGGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATTATTTGGTACTTAAGTAGTTTTACTTCAAACTAAGAAGGAAA  347

seq1  ACTCATATGTTAAAACCATCACATCTTCTCTAGGTCAGTGGAAGACCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATGTTAAAACCATCACATCTTCTCTAGGTCAGTGGAAGACCCTG  397

seq1  CAATAATTCCACAGGTTTCTCTTTTCACCCGCAAGCACGGGCCACACCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTCCACAGGTTTCTCTTTTCACCCGCAAGCACGGGCCACACCTC  447

seq1  TAAATAGAACAAGTCAAGAAATGGTAAGCTCACAAAAAGTACCAAGTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAACAAGTCAAGAAATGGTAAGCTCACAAAAAGTACCAAGTGGG  497

seq1  CATAAATAGCAAGGGACATATTTGAAAAGCCACAGTGACGAGGGACAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAGCAAGGGACATATTTGAAAAGCCACAGTGACGAGGGACAACT  547

seq1  TGCAAATATTTAAAAGTGACAGAAGTATGAATCAAGAATAGCAGGAGTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATATTTAAAAGTGACAGAAGTATGAATCAAGAATAGCAGGAGTTA  597

seq1  TTTTTCCTTCTTTTCTTGTTTTTAAAATGCCAGAGGAGGCTTAGGATATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTCTTTTCTTGTTTTTAAAATGCCAGAGGAGGCTTAGGATATA  647

seq1  GACAGTCAGTCAAGACTGTCACTCCTAACCTAGCAACGACGCCACACTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCAGTCAAGACTGTCACTCCTAACCTAGCAACGACGCCACACTCT  697

seq1  GTCAGCTCCCAGCTCATCATTTTTTTGAGCCACAGAGACCCCACGGATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCCCAGCTCATCATTTTTTTGAGCCACAGAGACCCCACGGATTC  747

seq1  AAAACTGTGTGTCCCAAGCCCCCTGAAAGAGAGGCAAGTGGTTCACTGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGTGTCCCAAGCCCCCTGAAAGAGAGGCAAGTGGTTCACTGGG  797

seq1  ACTGCACCACCTTCAGCTGACAGGTGTAGAGGGACTGTCATAAAGACTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCACCTTCAGCTGACAGGTGTAGAGGGACTGTCATAAAGACTGG  847

seq1  GTTAGCATGGCAACTGTTAGCCATCCTCAAAGTCTAGGTATGTTCCCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATGGCAACTGTTAGCCATCCTCAAAGTCTAGGTATGTTCCCTGG  897

seq1  GACTGGGCATCATCACACACAAATTCTTTCCATAGTCCACTTGCTGCTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCATCATCACACACAAATTCTTTCCATAGTCCACTTGCTGCTCA  947

seq1  CCAGAAATAAGGAACATGCCAGCATTGTGTTACCATTTTCTCTGAGTTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATAAGGAACATGCCAGCATTGTGTTACCATTTTCTCTGAGTTGC  997

seq1  TGAATTC  1003
      |||||||
seq2  TGAATTC  1004

seq1: chr15_84222962_84223806
seq2: B6Ng01-199F13.g_63_910

seq1  GAATTCTCTGCTATGTGTGGCAGCATTGAAAATTGGCTCCTGGGAGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTATGTGTGGCAGCATTGAAAATTGGCTCCTGGGAGACCT  50

seq1  GACCTGGTCCTCAGCTCAGTGGGGCCTGAGCGGGAAGTTGGTTGGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTCCTCAGCTCAGTGGGGCCTGAGCGGGAAGTTGGTTGGTGCTG  100

seq1  GGGAATTGGTGACTGGGGGACATCCAGAAAGCCATAGCAGATCAAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGGTGACTGGGGGACATCCAGAAAGCCATAGCAGATCAAGTAAG  150

seq1  AGAGACAATAGCTACTACAGACCTTGACTCTAGATGAAGGTCCTTGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAATAGCTACTACAGACCTTGACTCTAGATGAAGGTCCTTGGACC  200

seq1  CCATCCCATGGCCCTGGGATTCTAGAAAATTCTGTGAAAGGCAAGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCATGGCCCTGGGATTCTAGAAAATTCTGTGAAAGGCAAGTTAGG  250

seq1  GCTGGGCTAGGCCTTCTCAGAGTGCTTTCACCTCTGCTCTCCATCTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTAGGCCTTCTCAGAGTGCTTTCACCTCTGCTCTCCATCTTCAA  300

seq1  GAGCCCACTTTCAAATTTTACTAGGAAAGGACTTGGACTCTGAGGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCACTTTCAAATTTTACTAGGAAAGGACTTGGACTCTGAGGAGACA  350

seq1  GGTGATTTGCCCAGGATCAATGTCCAGCCAGTGCTAGGGTTTGCAGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTGCCCAGGATCAATGTCCAGCCAGTGCTAGGGTTTGCAGTCTG  400

seq1  GCCTGTGCCACTAACCATTGAGCAACACTGCCTCCAGTCTACACCTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCCACTAACCATTGAGCAACACTGCCTCCAGTCTACACCTGAGC  450

seq1  CAGGCCGGGGTGGGGAGACAGTAGAGGAGGAGTTGTGCAGCTGGCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCGGGGTGGGGAGACAGTAGAGGAGGAGTTGTGCAGCTGGCAGGCA  500

seq1  GGCAGGCAGGCTAGGCCAGCGTCTGCAGCCTGTTTGAGATGAGATAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGGCTAGGCCAGCGTCTGCAGCCTGTTTGAGATGAGATAGAGC  550

seq1  ACCTGGCAATTTGAATAGTAATGAATGCTTCCAGAATGCCAGGCAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCAATTTGAATAGTAATGAATGCTTCCAGAATGCCAGGCAAGTCT  600

seq1  GGAACAATAACAGCAAAGGAGAGATGAAAGCCTTCTGCCTAACTGCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATAACAGCAAAGGAGAGATGAAAGCCTTCTGCCTAACTGCAGGT  650

seq1  GAAGTGTGGACACGGCTCCTGGGATGACAATGGCTCATAGCCACTTAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGGACACGGCTCCTGGGATGACAATGGCTCATAGCCACTTAGCG  700

seq1  CCGGCTGGATGCCGGGCCGGGGCAGGACCGTGACACATTTCCTGGGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGGATGCCGGGCCGGGGCAGGACCGTGACACATTTCCTGGGGTGT  750

seq1  TCTCCCAGCAACCCTGTGG-TTGGGACAGCATTAAGCACA-TTTTACAAG  798
      ||||||||||||||||||| ||||||||||||| |||||| |||||||||
seq2  TCTCCCAGCAACCCTGTGGTTTGGGACAGCATTTAGCACATTTTTACAAG  800

seq1  GGAGCAAAAGACAGGGATGCTGAGAGAA-CCATGGGGTGGTGGTGGTG  845
      |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGCAAAAGACAGGGATGCTGAGAGAACCCATGGGGTGGTGGTGGTG  848