BAC Information

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BAC

Clone NameB6Ng01-199G08
Chromosome15 (Build37)
Map Location 42,449,943 - 42,451,084
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199G08.bB6Ng01-199G08.g
ACCGA020740GA020741
length1,1641,179
definitionB6Ng01-199G08.b B6Ng01-199G08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatatattccttcaaccattcacaaatctatatatattctttat
tagtctccgacgatgctccagatggcaggtcgtacaaatacataattaac
tgcagaatagtcctcatcctcctgtggactctttcagtttagtcagtaca
aattgaaaaagaggtaattgtgatggagagaggaccacagaagcatttga
gctatatcagcttcatacccaaataggtgtggaaaggggatgtcactcca
ccatgaagaacagcataggcaaaggtgtagaacaaggattccacaacaca
tttggcaatttttgagacaggggagaagtatagcatatctaacagtctgg
gcaggaagagacaagaaaaatagttgtgctaaatatatgctagggatttt
ggactccattacaagagctactaaaagtcagggaagctttgtaaacatca
cagttgtatggttgcaaactgggagtgtcagtatagggctacagtgctca
agataagtgaaattatttattggcctgctcagaaaatccaagggaaatag
cttcaggaactacatatcatagagaagattaactattaaataagactggg
ctaacaaagttgatctcagctaagccaaacatttaaagaaatgcttaagt
agtaattaaccaaattaaaaaggctgtatgcttgctgagacatgagccta
attagatagcagagattaatggattaaagggggaacatccctaaacaact
agtgtttcctttactgttagaatggtaattttcatttgtaaatgtttgcc
cagtgagtttaaaaaccaaactatttggaaggattgtatttcctgaaagt
tgtggacatccacttaaacatatctgagtgttcatctgtttacagagttg
gttttagaatggttatatacagtgaatttcatctagctctcactttcatt
tagtgacatggtaaacaagaaggtttggttttgttcattttatgaacggg
ggactcgaagccaatggcttgttttcaataacatttatttatagttgttc
caagtcagagcttggagtgaagaaatgaccttcattagatcttttctaga
agaaaggaaaatattgcctaaggtttagattacctgtacatactacagtc
agcacagtttacct

gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgaaaatggggctcagaactga
acaaagaatcctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaaggtcaaaaattcaggtgacagc
atatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggatagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtagcacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgataaacacatgaaactcaag
aagcatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagtttacaaagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
tcagcatccaaacgctgacaccattgcatatactagcaagattttactga
aaggacccagatgtagctgtcttcttgtgagacttatgcctggggcccta
gcaaaacacagagtggatgcttcacagtcagcttattggattgaatcaca
gggctccccaatggaagagcttagagaaagtacccaaagagcctatatga
atcttgcatcctataggtgacaattagactagcagtaccctgaagctctt
ggtaccttaggctgtcatatgtgattatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42449943_42451084
seq2: B6Ng01-199G08.b_33_1196

seq1  GAATTCCATATATTCCTTCAACCATTCACAAATCTATATATATTCTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATATTCCTTCAACCATTCACAAATCTATATATATTCTTTAT  50

seq1  TAGTCTCCGACGATGCTCCAGATGGCAGGTCGTACAAATACATAATTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCGACGATGCTCCAGATGGCAGGTCGTACAAATACATAATTAAC  100

seq1  TGCAGAATAGTCCTCATCCTCCTGTGGACTCTTTCAGTTTAGTCAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATAGTCCTCATCCTCCTGTGGACTCTTTCAGTTTAGTCAGTACA  150

seq1  AATTGAAAAAGAGGTAATTGTGATGGAGAGAGGACCACAGAAGCATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAAAGAGGTAATTGTGATGGAGAGAGGACCACAGAAGCATTTGA  200

seq1  GCTATATCAGCTTCATACCCAAATAGGTGTGGAAAGGGGATGTCACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATCAGCTTCATACCCAAATAGGTGTGGAAAGGGGATGTCACTCCA  250

seq1  CCATGAAGAACAGCATAGGCAAAGGTGTAGAACAAGGATTCCACAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGAACAGCATAGGCAAAGGTGTAGAACAAGGATTCCACAACACA  300

seq1  TTTGGCAATTTTTGAGACAGGGGAGAAGTATAGCATATCTAACAGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAATTTTTGAGACAGGGGAGAAGTATAGCATATCTAACAGTCTGG  350

seq1  GCAGGAAGAGACAAGAAAAATAGTTGTGCTAAATATATGCTAGGGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGAGACAAGAAAAATAGTTGTGCTAAATATATGCTAGGGATTTT  400

seq1  GGACTCCATTACAAGAGCTACTAAAAGTCAGGGAAGCTTTGTAAACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCATTACAAGAGCTACTAAAAGTCAGGGAAGCTTTGTAAACATCA  450

seq1  CAGTTGTATGGTTGCAAACTGGGAGTGTCAGTATAGGGCTACAGTGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTATGGTTGCAAACTGGGAGTGTCAGTATAGGGCTACAGTGCTCA  500

seq1  AGATAAGTGAAATTATTTATTGGCCTGCTCAGAAAATCCAAGGGAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTGAAATTATTTATTGGCCTGCTCAGAAAATCCAAGGGAAATAG  550

seq1  CTTCAGGAACTACATATCATAGAGAAGATTAACTATTAAATAAGACTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAACTACATATCATAGAGAAGATTAACTATTAAATAAGACTGGG  600

seq1  CTAACAAAGTTGATCTCAGCTAAGCCAAACATTTAAAGAAATGCTTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAGTTGATCTCAGCTAAGCCAAACATTTAAAGAAATGCTTAAGT  650

seq1  AGTAATTAACCAAATTAAAAAGGCTGTATGCTTGCTGAGACATGAGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAACCAAATTAAAAAGGCTGTATGCTTGCTGAGACATGAGCCTA  700

seq1  ATTAGATAGCAGAGATTAATGGATTAAAGGGGGAACATCCCTAAACAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAGCAGAGATTAATGGATTAAAGGGGGAACATCCCTAAACAACT  750

seq1  AGTGTTTCCTTTACTGTTAGAATGGTAATTTTCATTTGTAAATGTTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCCTTTACTGTTAGAATGGTAATTTTCATTTGTAAATGTTTGCC  800

seq1  CAGTGAGTTTAAAAACCAAACTATTTGGAAGGATTGTATTTCCTGAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTTTAAAAACCAAACTATTTGGAAGGATTGTATTTCCTGAAAGT  850

seq1  TGTGGACATCCACTTAAACATATCTGAGTGTTCATCTGTTTACAGAGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACATCCACTTAAACATATCTGAGTGTTCATCTGTTTACAGAGTTG  900

seq1  GTTTAGAAATGGTTATATACAGTGAATTTCATCTAGCTCTCACTTTCATT  950
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAATGGTTATATACAGTGAATTTCATCTAGCTCTCACTTTCATT  950

seq1  TAGTGACAT-GTAAACAAGAAGGTTTG--TTTG-TCA-TTTATGAAC-GG  994
      ||||||||| |||||||||||||||||  |||| ||| ||||||||| ||
seq2  TAGTGACATGGTAAACAAGAAGGTTTGGTTTTGTTCATTTTATGAACGGG  1000

seq1  GGACTCGAAG-CAATGGCT--GTTTCAATAACATT--ATTATAG-TGGTC  1038
      |||||||||| ||||||||   |||||||||||||   |||||| || ||
seq2  GGACTCGAAGCCAATGGCTTGTTTTCAATAACATTTATTTATAGTTGTTC  1050

seq1  CAAGTCAGAGCTGGGAGTG-AGAAATGACC-TCATAAGGATC-TTTCTAG  1085
      |||||||||||| |||||| |||||||||| |||| | |||| |||||||
seq2  CAAGTCAGAGCTTGGAGTGAAGAAATGACCTTCATTA-GATCTTTTCTAG  1099

seq1  -AGAAA-GAAAATAT--GCTAAAG-TTAGATTA-CTGTACATACTACAG-  1128
       ||||| ||||||||   |||| | |||||||| ||||||||||||||| 
seq2  AAGAAAGGAAAATATTGCCTAAGGTTTAGATTACCTGTACATACTACAGT  1149

seq1  CAGCACA-TTTACCT  1142
      ||||||| |||||||
seq2  CAGCACAGTTTACCT  1164


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