BAC Information

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BAC

Clone NameB6Ng01-200N02
Chromosome15 (Build37)
Map Location 27,344,216 - 27,441,226
singlet/doubletdoublet
Overlap geneAnk
Upstream geneFbxl7, LOC622531, LOC625311
Downstream geneBC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5, EG382974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200N02.bB6Ng01-200N02.g
ACCGA021771GA021772
length1,0781,048
definitionB6Ng01-200N02.b B6Ng01-200N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,440,165 - 27,441,226)(27,344,216 - 27,345,259)
sequence
gaattctacaagattaatcaaaaattaactggattaattagtgttttttt
tttaattttatttgagatagggtctcactgtgtaaacctggctggcctgc
aactcactatgtagactaagctggttcacagaggtctgcctgcctcttgc
agggatttaaagatatgtgctactctacccaacaaaactggcattctata
agtagtgtatagtatttctcagaccgttcttcaggttggatttaagtata
ataacatgttgtataatgatatcgataaaagatacattttctacctatga
gcttcaattctaaccacagggttcacatgagcctaaagtagtattgtttg
gtttctggagtgggatggaataagggtttaccattatatagtacaatgag
agtatacatgagctctgtatgtcacttatgggccattctgttaaaggatc
aaagatctctgggtatccactaacatgtaaagttaagctctatccagggg
cattctgggaggagtttcactaagctgattgggaggaggactctaaggtc
aggccaggtcaggatagttccaggaggctaatgctgggaacacagctttg
aggagccttaagaaaacctgctcagggatgggattgacaaccattataga
aaaacctaccagttactgccattcaataaatgtattacatttcaaggctg
tgccaagcctgcatgagaggccaacattgtatagctgatagattcacttc
aagttcattctgaggcgagttctgctaggagtcccttgaggtcagtcatc
taccaaaacgtcaaacaacccacagcaagagcatctgaagtcagaggctg
tcaaaggagggttaacatttcttgtaatagccagaaagacagtttgccac
cgcctcacttagaacttacagtcattactccttttcctctgaaattggaa
agagcaaaacgtagcctggacttcccgaagaagcttccgagaagcaggcc
cagtccggtgttctagaaggctgtgaatggaacctccgatttattgatat
tgtaatgaactacccgattatttgataa

gaattctctcccaacagcactggagactgcagtgggctggtgacacagga
aggactttggaaaccgagtgtagcctccagtcacagctttatccctttcc
agatgtatgtgtcctgttgtcatcccctcatctaaaaataaaaaataaaa
aaacaagaaaaaaaacaaaaacaaaaaacaaacaaaccggataaaacaaa
gccccactctgttgaattattctgaggcacagtgaggcaagattcaggtc
atgatagaaacccatccaaagatgacagacgatatggtaaatagaccaga
atagtgtctgggctgcgagagacaaccaacaaatacctccggtgtcattt
taaaatacagactttctagtgcaatcattttccggtgtctctgttttatt
aacgacttagcagtaattatcacagtttacaggatttctatcccgacaca
tagaatatcctgctgctttctggtatcctgttcagcagaccatccacaca
gcttcacacaattataaccatgagtaataccatgacccggagacaggacc
gtctaccagagctgtcttcttaaccattggaaaacagagtggacgatgtt
ttaactggcatgcttccaagtgtaggctaccaggctgttttcttgatatc
catttacacaggaagagactctctttcttctatttgaagacataatgaaa
caccctcccgttcttgttaatttctcatttcagtgggtaagaatgactct
aacaagcatttgtgaatctgtgttttgctcgctgaaggttaaagaataca
tacacccttcccaggaaagttccttactagtccaagtcccagcgagacat
gggtgcacagaagccaggagtatcgataagcatggtttagtatcgtgacc
aactcctgttcttgccagacactggctggggtccaacagtcgacccttac
aacaagagagtcttcactgacacagaacttcgcagagcacgtccattact
ggaaaagggaaaccgagatccagaagatccaaagttaccacagcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_27440165_27441226
seq2: B6Ng01-200N02.b_46_1123 (reverse)

seq1  TTATC-AATAATCGG--TGTTCATCAC-ATATCAAT-AATCGGCG--TTC  43
      ||||| |||||||||   |||||| || |||||||| |||||| |  | |
seq2  TTATCAAATAATCGGGTAGTTCATTACAATATCAATAAATCGGAGGTTCC  50

seq1  ATTCACAGCC-TCTAG-ACA-CGGACTGGGCTTGCTTCTCGGAAGCTTC-  89
      |||||||||| ||||| ||| |||||||||| ||||||||||||||||| 
seq2  ATTCACAGCCTTCTAGAACACCGGACTGGGCCTGCTTCTCGGAAGCTTCT  100

seq1  TCGGG-AGTCCAGGCTACGTTTTGCTC-TTCCATTTTCAGAGG-AAAGGA  136
      ||||| ||||||||||||||||||||| ||||| ||||||||| ||||||
seq2  TCGGGAAGTCCAGGCTACGTTTTGCTCTTTCCAATTTCAGAGGAAAAGGA  150

seq1  GTAATGACTGTAAGTTCTAAGTGAGGCGGTGGCAAACTGTCTTTCTGGCT  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGACTGTAAGTTCTAAGTGAGGCGGTGGCAAACTGTCTTTCTGGCT  200

seq1  A-TACAAG-AATGTTAACCCTCCTTTGACAGCCTCTGACTTCAGATGCTC  234
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGAAATGTTAACCCTCCTTTGACAGCCTCTGACTTCAGATGCTC  250

seq1  TTGCTGTGGGTTGTTTGACGTTTTGGTAGATGACTGACCTCAAGGGACTC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGGGTTGTTTGACGTTTTGGTAGATGACTGACCTCAAGGGACTC  300

seq1  CTAGCAGAACTCGCCTCAGAATGAACTTGAAGTGAATCTATCAGCTATAC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGAACTCGCCTCAGAATGAACTTGAAGTGAATCTATCAGCTATAC  350

seq1  AATGTTGGCCTCTCATGCAGGCTTGGCACAGCCTTGAAATGTAATACATT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGCCTCTCATGCAGGCTTGGCACAGCCTTGAAATGTAATACATT  400

seq1  TATTGAATGGCAGTAACTGGTAGGTTTTTCTATAATGGTTGTCAATCCCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATGGCAGTAACTGGTAGGTTTTTCTATAATGGTTGTCAATCCCA  450

seq1  TCCCTGAGCAGGTTTTCTTAAGGCTCCTCAAAGCTGTGTTCCCAGCATTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGCAGGTTTTCTTAAGGCTCCTCAAAGCTGTGTTCCCAGCATTA  500

seq1  GCCTCCTGGAACTATCCTGACCTGGCCTGACCTTAGAGTCCTCCTCCCAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGGAACTATCCTGACCTGGCCTGACCTTAGAGTCCTCCTCCCAA  550

seq1  TCAGCTTAGTGAAACTCCTCCCAGAATGCCCCTGGATAGAGCTTAACTTT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTAGTGAAACTCCTCCCAGAATGCCCCTGGATAGAGCTTAACTTT  600

seq1  ACATGTTAGTGGATACCCAGAGATCTTTGATCCTTTAACAGAATGGCCCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTAGTGGATACCCAGAGATCTTTGATCCTTTAACAGAATGGCCCA  650

seq1  TAAGTGACATACAGAGCTCATGTATACTCTCATTGTACTATATAATGGTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACATACAGAGCTCATGTATACTCTCATTGTACTATATAATGGTA  700

seq1  AACCCTTATTCCATCCCACTCCAGAAACCAAACAATACTACTTTAGGCTC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTATTCCATCCCACTCCAGAAACCAAACAATACTACTTTAGGCTC  750

seq1  ATGTGAACCCTGTGGTTAGAATTGAAGCTCATAGGTAGAAAATGTATCTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACCCTGTGGTTAGAATTGAAGCTCATAGGTAGAAAATGTATCTT  800

seq1  TTATCGATATCATTATACAACATGTTATTATACTTAAATCCAACCTGAAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGATATCATTATACAACATGTTATTATACTTAAATCCAACCTGAAG  850

seq1  AACGGTCTGAGAAATACTATACACTACTTATAGAATGCCAGTTTTGTTGG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCTGAGAAATACTATACACTACTTATAGAATGCCAGTTTTGTTGG  900

seq1  GTAGAGTAGCACATATCTTTAAATCCCTGCAAGAGGCAGGCAGACCTCTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTAGCACATATCTTTAAATCCCTGCAAGAGGCAGGCAGACCTCTG  950

seq1  TGAACCAGCTTAGTCTACATAGTGAGTTGCAGGCCAGCCAGGTTTACACA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGCTTAGTCTACATAGTGAGTTGCAGGCCAGCCAGGTTTACACA  1000

seq1  GTGAGACCCTATCTCAAATAAAATTAAAAAAAAAACACTAATTAATCCAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCCTATCTCAAATAAAATTAAAAAAAAAACACTAATTAATCCAG  1050

seq1  TTAATTTTTGATTAATCTTGTAGAATTC  1062
      ||||||||||||||||||||||||||||
seq2  TTAATTTTTGATTAATCTTGTAGAATTC  1078


seq1: chr15_27344216_27345259
seq2: B6Ng01-200N02.g_62_1109

seq1  GAATTCTCTCCCAACAGCACTGGAGACTGCAGTGGGCTGGTGACACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCAACAGCACTGGAGACTGCAGTGGGCTGGTGACACAGGA  50

seq1  AGGACTTTGGAAACCGAGTGTAGCCTCCAGTCACAGCTTTATCCCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGGAAACCGAGTGTAGCCTCCAGTCACAGCTTTATCCCTTTCC  100

seq1  AGATGTATGTGTCCTGTTGTCATCCCCTCATCTAAAAATAAAAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATGTGTCCTGTTGTCATCCCCTCATCTAAAAATAAAAAATAAAA  150

seq1  AAACAAGAAAAAAAACAAAAACAAAAAACAAACAAACCGGATAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAAAAAAACAAAAACAAAAAACAAACAAACCGGATAAAACAAA  200

seq1  GCCCCACTCTGTTGAATTATTCTGAGGCACAGTGAGGCAAGATTCAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTCTGTTGAATTATTCTGAGGCACAGTGAGGCAAGATTCAGGTC  250

seq1  ATGATAGAAACCCATCCAAAGATGACAGACGATATGGTAAATAGACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAAACCCATCCAAAGATGACAGACGATATGGTAAATAGACCAGA  300

seq1  ATAGTGTCTGGGCTGCGAGAGACAACCAACAAATACCTCCGGTGTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCTGGGCTGCGAGAGACAACCAACAAATACCTCCGGTGTCATTT  350

seq1  TAAAATACAGACTTTCTAGTGCAATCATTTTCCGGTGTCTCTGTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAGACTTTCTAGTGCAATCATTTTCCGGTGTCTCTGTTTTATT  400

seq1  AACGACTTAGCAGTAATTATCACAGTTTACAGGATTTCTATCCCGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTTAGCAGTAATTATCACAGTTTACAGGATTTCTATCCCGACACA  450

seq1  TAGAATATCCTGCTGCTTTCTGGTATCCTGTTCAGCAGACCATCCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATCCTGCTGCTTTCTGGTATCCTGTTCAGCAGACCATCCACACA  500

seq1  GCTTCACACAATTATAACCATGAGTAATACCATGACCCGGAGACAGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACACAATTATAACCATGAGTAATACCATGACCCGGAGACAGGACC  550

seq1  GTCTACCAGAGCTGTCTTCTTAACCATTGGAAAACAGAGTGGACGATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCAGAGCTGTCTTCTTAACCATTGGAAAACAGAGTGGACGATGTT  600

seq1  TTAACTGGCATGCTTCCAAGTGTAGGCTACCAGGCTGTTTTCTTGATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGCATGCTTCCAAGTGTAGGCTACCAGGCTGTTTTCTTGATATC  650

seq1  CATTTACACAGGAAGAGACTCTCTTTCTTCTATTTGAAGACATAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACACAGGAAGAGACTCTCTTTCTTCTATTTGAAGACATAATGAAA  700

seq1  CACCCTCCCGTTCTTGTTAATTTCTCATTTCAGTGGGTAAGAATGACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCCGTTCTTGTTAATTTCTCATTTCAGTGGGTAAGAATGACTCT  750

seq1  AACAAGCATTTGTGAATCTGTGTTTTGCTCGCTGAAGGTTAAAGAATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCATTTGTGAATCTGTGTTTTGCTCGCTGAAGGTTAAAGAATACA  800

seq1  TACA-CCTTCCCAGGAAAGTTCCTTACTAGTCCAAGTCCCAGCGAGACAT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCTTCCCAGGAAAGTTCCTTACTAGTCCAAGTCCCAGCGAGACAT  850

seq1  GGGTGCACAGAAGCCAGGAGTATCGATAAGCATGG-TTAGTATCGTGACC  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGTGCACAGAAGCCAGGAGTATCGATAAGCATGGTTTAGTATCGTGACC  900

seq1  AACCTCCTGTTCTTGCCAGACACTGGCT-GGGTCCAACAGTCGACCC-TA  946
      || ||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  AA-CTCCTGTTCTTGCCAGACACTGGCTGGGGTCCAACAGTCGACCCTTA  949

seq1  CAACAAGAGAGTCTTCACTGACACAGA--CTCGCAGAGCACGGTCCA-TA  993
      |||||||||||||||||||||||||||   ||||||||||| ||||| ||
seq2  CAACAAGAGAGTCTTCACTGACACAGAACTTCGCAGAGCAC-GTCCATTA  998

seq1  CTGGAAAAAGGAGACCGAAGGATCCAGAAGATCCAAAGTTA-CACAGCAT  1042
      |||||||| ||| |||||  ||||||||||||||||||||| ||||||||
seq2  CTGGAAAAGGGAAACCGA--GATCCAGAAGATCCAAAGTTACCACAGCAT  1046

seq1  AG  1044
      ||
seq2  AG  1048


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