BAC Information

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BAC

Clone NameB6Ng01-203D14
Chromosome15 (Build37)
Map Location 47,360,483 - 47,507,459
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203D14.bB6Ng01-203D14.g
ACCGA023497GA023498
length1,1721,157
definitionB6Ng01-203D14.b B6Ng01-203D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,360,483 - 47,361,636)(47,506,302 - 47,507,459)
sequence
gaattcatggttgggagttgccccttgaaggctctgaatctatgagccag
gccccttctactgcctgtggttctggctgcagaggctgctgttctgccca
aggagaagaacaatattggggtggaaaaatgacattcttctccatttatc
cttggaggaccagatagggagctggtgtaggaggaggaagatggtctggt
gtctcggctttctcatccttggtctttttgttagccaaagtgaacacttc
tgcctgatgtctggggtcaaaagatttaagccagttaggaggattctcta
gtaggtccctccaaaacagtatataggatacctgatccagttggctagac
ttaggtctaaaaatgatgttttcaaggccgttaccagtctaaagtccaga
aatacctctgttgggtcagatgatgttaaatcctggtcattcagacctac
agaactttattagtttctctttcctattggttactgaaatattctgtcct
ctggtcctaacatctttaaagtaactgagaaataattctggaagggtaaa
aggtacttgtccaatcctaaatctgtcaaagtcaatgttgccccataaca
agaaatgcaagagtagacaattattcaacaggaacaccaacaaatataaa
cacaaaaagattcatcctctaccctccttcaggaggaaaagtggccatgg
ctacctgagcctgtaaccagtcctgattgagacactagaggtctcctccc
tctcaaagtctggaatgtcttcaagccctgtgtaattaaggatatctagc
acttctgccccagttgcactaaccatgaaatacatatttttaggcctctt
ttcagaacagaataatagcagttctccacagacacatagacagacacaga
caggaatggaatgatggcagtatggaatagatacatggaaacagaacttg
tattgcatggcacagacacacagaaaggaattattgcggttctacacaag
acaatacagcagaaattccttataaggctagcattaagattttttcagat
tctgggatttcttagggggtcttagtgtttccggccaacaccacccaaga
atgtttttttctaattttaccaagcacccaaaaatattcctcaaaaaaag
cgattcttattgcaaaagaaca
gaattctgctcctaaattaaaagagctattgagctacactctgctgcagc
ttgtctgaaggcttccttctttccttttcattaacaggcgatattatcag
atatcagtgtcttccagggtttacactggttggcaatgcaattctgacat
gcagattgggagagcgactgcagatggatggggcacctccagtgtgtcaa
ggtactgatgtttcacagatatttgtttatggtccaggttggactcatac
cggagtttcacctgccattgtctcatgagtgttgggattgcacacaaagc
aacacctaatttgtgggaattgggtgttaacataaacatttgttttgtat
ttaagtcggaatagaaaaaaaaaaataaaaagaaaacatttccagtaatg
ataatgtgactctgaggtatatattccaaaaatttcttagatgggccaat
taaataatctttctctttttttctgacatttaattttttataattagctt
aatatcagcttaacttatataaagtattttttctctaacaaggtatgaaa
ggtaaagaaaaagggggaaatgtctaagagaaagcccaaggttataacta
attttattagaaagaaggtattctgaccacttgttataggactccttatt
tgctacatgtaagaatatgaaaatgagggttcagcagatggacacacacc
aaaatagcaagcaagcaggaaagcaagcaagcaaataaacaatctttaac
caagcacactatatacgcatcacagtggaaggccagaccaatccgcccag
tgacagcaaaccatgttcagagtatatccaggaacctgtaaaataaggat
aagtaggtgtgaatcaaactcagcaaggaatcctgcattccaaatgggca
atgaaagttttattagaaaaagcttagcggaaaattgtctggatgtctgt
agaacatgaaaggagacatatagagaactggatatggatataaaggaatt
tacctctgtcaccaggcagtaaagataggattggaaagaactagtatact
aagatgctcaaacaccttcactgtggatttggtgctggcatagtcttacc
tcacaataacttatggaataatggtagcctgagctggaataatagaacct
atttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47360483_47361636
seq2: B6Ng01-203D14.b_42_1213

seq1  GAATTCATGGTTGGGAGTTGCCCCTTGAAGGCTCTGAATCTATGAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTTGGGAGTTGCCCCTTGAAGGCTCTGAATCTATGAGCCAG  50

seq1  GCCCCTTCTACTGCCTGTGGTTCTGGCTGCAGAGGCTGCTGTTCTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCTACTGCCTGTGGTTCTGGCTGCAGAGGCTGCTGTTCTGCCCA  100

seq1  AGGAGAAGAACAATATTGGGGTGGAAAAATGACATTCTTCTCCATTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGAACAATATTGGGGTGGAAAAATGACATTCTTCTCCATTTATC  150

seq1  CTTGGAGGACCAGATAGGGAGCTGGTGTAGGAGGAGGAAGATGGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGACCAGATAGGGAGCTGGTGTAGGAGGAGGAAGATGGTCTGGT  200

seq1  GTCTCGGCTTTCTCATCCTTGGTCTTTTTGTTAGCCAAAGTGAACACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGGCTTTCTCATCCTTGGTCTTTTTGTTAGCCAAAGTGAACACTTC  250

seq1  TGCCTGATGTCTGGGGTCAAAAGATTTAAGCCAGTTAGGAGGATTCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATGTCTGGGGTCAAAAGATTTAAGCCAGTTAGGAGGATTCTCTA  300

seq1  GTAGGTCCCTCCAAAACAGTATATAGGATACCTGATCCAGTTGGCTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCCTCCAAAACAGTATATAGGATACCTGATCCAGTTGGCTAGAC  350

seq1  TTAGGTCTAAAAATGATGTTTTCAAGGCCGTTACCAGTCTAAAGTCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTAAAAATGATGTTTTCAAGGCCGTTACCAGTCTAAAGTCCAGA  400

seq1  AATACCTCTGTTGGGTCAGATGATGTTAAATCCTGGTCATTCAGACCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTCTGTTGGGTCAGATGATGTTAAATCCTGGTCATTCAGACCTAC  450

seq1  AGAACTTTATTAGTTTCTCTTTCCTATTGGTTACTGAAATATTCTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTATTAGTTTCTCTTTCCTATTGGTTACTGAAATATTCTGTCCT  500

seq1  CTGGTCCTAACATCTTTAAAGTAACTGAGAAATAATTCTGGAAGGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTAACATCTTTAAAGTAACTGAGAAATAATTCTGGAAGGGTAAA  550

seq1  AGGTACTTGTCCAATCCTAAATCTGTCAAAGTCAATGTTGCCCCATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTGTCCAATCCTAAATCTGTCAAAGTCAATGTTGCCCCATAACA  600

seq1  AGAAATGCAAGAGTAGACAATTATTCAACAGGAACACCAACAAATATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCAAGAGTAGACAATTATTCAACAGGAACACCAACAAATATAAA  650

seq1  CACAAAAAGATTCATCCTCTACCCTCCTTCAGGAGGAAAAGTGGCCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGATTCATCCTCTACCCTCCTTCAGGAGGAAAAGTGGCCATGG  700

seq1  CTACCTGAGCCTGTAACCAGTCCTGATTGAGACACTAGAGGTCTCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGAGCCTGTAACCAGTCCTGATTGAGACACTAGAGGTCTCCTCCC  750

seq1  TCTCAAAGTCTGGAATGTCTTCAAGCCCTGTGTAATTAAGGATATCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTCTGGAATGTCTTCAAGCCCTGTGTAATTAAGGATATCTAGC  800

seq1  ACTTCTGCCCCAGTTGCACTAACCATGAAATACATATTTTTAGGCCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCCCCAGTTGCACTAACCATGAAATACATATTTTTAGGCCTCTT  850

seq1  TTCAGAACAGAATAATAGCAGTTCTCCACAGACACATAGACAGACACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACAGAATAATAGCAGTTCTCCACAGACACATAGACAGACACAGA  900

seq1  CAGGAATGGAATGATGGCAGTATGGAATAGATACATGG-AACAGAACTTG  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGGAATGGAATGATGGCAGTATGGAATAGATACATGGAAACAGAACTTG  950

seq1  TATTGCATGGCACAGACACACAGAAAGGAATTATTGCGGTTCTACAC-AG  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTGCATGGCACAGACACACAGAAAGGAATTATTGCGGTTCTACACAAG  1000

seq1  AC-ATACAGGCAGGAATTCCTTAT-AGGCTAGCATTAAGATTTTTTCAGA  1046
      || ||||| |||| |||||||||| |||||||||||||||||||||||||
seq2  ACAATACA-GCAGAAATTCCTTATAAGGCTAGCATTAAGATTTTTTCAGA  1049

seq1  -TCTGG--ATTCTTAGGGGGTCTTAGTGTTCCGGGCCAACAC--ACCAAG  1091
       |||||   ||||||||||||||||||||| | |||||||||   |||||
seq2  TTCTGGGATTTCTTAGGGGGTCTTAGTGTTTCCGGCCAACACCACCCAAG  1099

seq1  A---TGTTTTGCTAATTTTA-CAAGCACC--AAAATA----TCACAAAGA  1131
      |   | |||| ||||||||| ||||||||  ||||||    ||| ||| |
seq2  AATGTTTTTTTCTAATTTTACCAAGCACCCAAAAATATTCCTCAAAAAAA  1149

seq1  GCCGATTC-TAATGCAAAAGAACA  1154
      | |||||| || ||||||||||||
seq2  G-CGATTCTTATTGCAAAAGAACA  1172

seq1: chr15_47506302_47507459
seq2: B6Ng01-203D14.g_65_1221 (reverse)

seq1  ATCAAATA-GTTCTATTTAATTCAACTCA-GCTACCA-TATATCATAAGT  47
      |||||||| |||||| ||| | || |||| ||||||| |||  |||||||
seq2  ATCAAATAGGTTCTA-TTATTCCAGCTCAGGCTACCATTATTCCATAAGT  49

seq1  TATTGTGAGGT-AGACTTATGGCCAGCA-CAAATCAACAGTGAAAGGTGT  95
      ||||||||||| |||| ||| ||||||| |||||| |||||| |||||||
seq2  TATTGTGAGGTAAGAC-TAT-GCCAGCACCAAATCCACAGTG-AAGGTGT  96

seq1  TTGAGCATCTTAAGTATACTAG-TCTTTCAAATCCTATCTTTAACTGCCT  144
      ||||||||||| |||||||||| |||||| |||||||||||| |||||| 
seq2  TTGAGCATCTT-AGTATACTAGTTCTTTCCAATCCTATCTTT-ACTGCC-  143

seq1  TGGTGACAGA-GTAAATTCCTTTATATCCATATCCAGTTCTCTTATATGT  193
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TGGTGACAGAGGTAAATTCCTTTATATCCATATCCAGTTCTC-TATATGT  192

seq1  CTCCTTTCATGTTCTACAGACATCCAGACAATTTTCCGCTAAGCTTTTTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCATGTTCTACAGACATCCAGACAATTTTCCGCTAAGCTTTTTC  242

seq1  TAATAAAACTTTCATTGCCCATTTGGAATGCAGGATTCCTTGCTGAGTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAACTTTCATTGCCCATTTGGAATGCAGGATTCCTTGCTGAGTTT  292

seq1  GATTCACACCTACTTATCCTTATTTTACAGGTTCCTGGATATACTCTGAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACACCTACTTATCCTTATTTTACAGGTTCCTGGATATACTCTGAA  342

seq1  CATGGTTTGCTGTCACTGGGCGGATTGGTCTGGCCTTCCACTGTGATGCG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTGCTGTCACTGGGCGGATTGGTCTGGCCTTCCACTGTGATGCG  392

seq1  TATATAGTGTGCTTGGTTAAAGATTGTTTATTTGCTTGCTTGCTTTCCTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTGTGCTTGGTTAAAGATTGTTTATTTGCTTGCTTGCTTTCCTG  442

seq1  CTTGCTTGCTATTTTGGTGTGTGTCCATCTGCTGAACCCTCATTTTCATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGCTATTTTGGTGTGTGTCCATCTGCTGAACCCTCATTTTCATA  492

seq1  TTCTTACATGTAGCAAATAAGGAGTCCTATAACAAGTGGTCAGAATACCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACATGTAGCAAATAAGGAGTCCTATAACAAGTGGTCAGAATACCT  542

seq1  TCTTTCTAATAAAATTAGTTATAACCTTGGGCTTTCTCTTAGACATTTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAATAAAATTAGTTATAACCTTGGGCTTTCTCTTAGACATTTCC  592

seq1  CCCTTTTTCTTTACCTTTCATACCTTGTTAGAGAAAAAATACTTTATATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCTTTACCTTTCATACCTTGTTAGAGAAAAAATACTTTATATA  642

seq1  AGTTAAGCTGATATTAAGCTAATTATAAAAAATTAAATGTCAGAAAAAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGCTGATATTAAGCTAATTATAAAAAATTAAATGTCAGAAAAAAA  692

seq1  GAGAAAGATTATTTAATTGGCCCATCTAAGAAATTTTTGGAATATATACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATTATTTAATTGGCCCATCTAAGAAATTTTTGGAATATATACC  742

seq1  TCAGAGTCACATTATCATTACTGGAAATGTTTTCTTTTTATTTTTTTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCACATTATCATTACTGGAAATGTTTTCTTTTTATTTTTTTTTT  792

seq1  TCTATTCCGACTTAAATACAAAACAAATGTTTATGTTAACACCCAATTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCGACTTAAATACAAAACAAATGTTTATGTTAACACCCAATTCC  842

seq1  CACAAATTAGGTGTTGCTTTGTGTGCAATCCCAACACTCATGAGACAATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTAGGTGTTGCTTTGTGTGCAATCCCAACACTCATGAGACAATG  892

seq1  GCAGGTGAAACTCCGGTATGAGTCCAACCTGGACCATAAACAAATATCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGAAACTCCGGTATGAGTCCAACCTGGACCATAAACAAATATCTG  942

seq1  TGAAACATCAGTACCTTGACACACTGGAGGTGCCCCATCCATCTGCAGTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCAGTACCTTGACACACTGGAGGTGCCCCATCCATCTGCAGTC  992

seq1  GCTCTCCCAATCTGCATGTCAGAATTGCATTGCCAACCAGTGTAAACCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCAATCTGCATGTCAGAATTGCATTGCCAACCAGTGTAAACCCT  1042

seq1  GGAAGACACTGATATCTGATAATATCGCCTGTTAATGAAAAGGAAAGAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACTGATATCTGATAATATCGCCTGTTAATGAAAAGGAAAGAAG  1092

seq1  GAAGCCTTCAGACAAGCTGCAGCAGAGTGTAGCTCAATAGCTCTTTTAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTCAGACAAGCTGCAGCAGAGTGTAGCTCAATAGCTCTTTTAAT  1142

seq1  TTAGGAGCAGAATTC  1158
      |||||||||||||||
seq2  TTAGGAGCAGAATTC  1157