BAC Information

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BAC

Clone NameB6Ng01-209D11
Chromosome15 (Build37)
Map Location 16,003,337 - 16,132,333
singlet/doubletdoublet
Overlap geneLOC100040087
Upstream geneLOC100040033, LOC100040046, EG239341
Downstream geneLOC624183, LOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209D11.bB6Ng01-209D11.g
ACCGA027891GA027892
length1,1371,129
definitionB6Ng01-209D11.b B6Ng01-209D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,003,337 - 16,004,473)(16,131,214 - 16,132,333)
sequence
gaattcaagagcagtagaaacagaaaccctttaaggcctgaccagtagaa
tccctttaggcttgaggataatatttggaatcagaacaacagagggttct
aactgtgaaaatctgatctgagccacgggggagaatgagatattaagaga
gccagggaaaagtttgctgatagttctttgcattacgctcaaagaggaag
atgacctaagtaataaaatctatgtccatgtcctttgactgcagggccaa
gaagacaggatcagtgcagaaaagaaaatatcacagaaattttacttcca
tcagaaacaccaactcaaaatgtctggaaaagaaaattatgaaggtgtgg
agatgtgccttgtcccttcagtctgaatgacatcatagactgtagcaata
taaacatttggccacaaacccccacctctattctgtagttactggccttt
cttcttcctctaatgaaattcactgcagaaaaaaagttcctttttgtttt
tgttatttgtttgtttgtttttgttttgtttatttagctgtttaattatt
tttcccagtatatcatgaaagaattttgtcattggagcctgaggcttctg
gtgatactggataaaccaccatgtggtagggatcagggaaacttagtgcc
tgctttcttctttgattcatcccgttttggggtggatcttcccacctgaa
ttaaggtatattcagataagtcttcaaagtcattcccagagagttgtctc
ttaggtacttctagattctgtcaagttcaaaatcaatacaaaatatcaca
cttattttatgtaacagtaagttttgggggggcagactctctcctctcct
atttatttttcttaattttttaattttgtgagatgggttccatattaaga
tgtacattggccattggcctaaggaagaggacgtcttcctgattcagctc
catgaatgtttttattgtgcaaattttcggattgcattaattactttttc
ttctcttttcattttacttttcctggtgcatcttatttttctactattgg
gtcactgttatgtacctttacactaactgggtttattttttctctccatt
tttctaaactactagtttggttggctcttccttattt

gaattccatcctttgggctggacgtgatcatcattgtcatggaaatgggt
ggcttgataatgcacaggagacttccgatctatgatccctattaatattt
cctcatcaacaccagttcaacatacaagaatcacattattcatgaggttc
acaaaatcctcatgaaaaattctctaaaggccctctggtcattgaattga
ctggaatgacatttctttgtggtatggatgtccataaattgcccagagta
ccagattttgcccacagtactgaataaactgtacatactgcagttctatc
ctctcaaaatgccagtgatagaagcaggaagttatgaaattcaaaccatc
ctcagcaacatagatgtttgagactggccttagtaacataagattctaca
tcaaaaatgataaggaaaggattatcagaccttcaggaataaaatctgga
agcatagccagactgtgtcatttacattgcattaaaagttctgtcttctc
ctctgttacaatttttcattctcatagtctaggatttgtccctttccatg
taaagatagttattatttgatatgttgtataagagataaagcattttcca
gcagagcatttgagcattccatcatttgagcatgtgagaagtcaaactat
caattaccaaatttaaatctaccacaacatttaattaggtatctcaaata
taaggtaaaatgaatttatcaaaaaggaaatcatatttacttttaagact
ggagataataatctatatttttcagctaacaggatttatagaaaactgat
gaaatgctttggcaaaatgtgaataaataaataatatagactcattattt
attgtacaggaagtgtgacaatttattttatgctttaatagtagtgagta
ccattgatattgagtttttatttaaccattttataatttccagggcctat
attgagtgaagtcaagttaacttcctttcaaaaggtgtttacatcttgag
tttggaagaatttattattttgaaactccactgaatttcaggcccacttg
tgacatattctcatgatagaattactggagcataagagtcaagtgcatct
tgatagaatgaggagaacacttagccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16003337_16004473
seq2: B6Ng01-209D11.b_45_1181

seq1  GAATTCAAGAGCAGTAGAAACAGAAACCCTTTAAGGCCTGACCAGTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCAGTAGAAACAGAAACCCTTTAAGGCCTGACCAGTAGAA  50

seq1  TCCCTTTAGGCTTGAGGATAATATTTGGAATCAGAACAACAGAGGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAGGCTTGAGGATAATATTTGGAATCAGAACAACAGAGGGTTCT  100

seq1  AACTGTGAAAATCTGATCTGAGCCACGGGGGAGAATGAGATATTAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAAAATCTGATCTGAGCCACGGGGGAGAATGAGATATTAAGAGA  150

seq1  GCCAGGGAAAAGTTTGCTGATAGTTCTTTGCATTACGCTCAAAGAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGAAAAGTTTGCTGATAGTTCTTTGCATTACGCTCAAAGAGGAAG  200

seq1  ATGACCTAAGTAATAAAATCTATGTCCATGTCCTTTGACTGCAGGGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAAGTAATAAAATCTATGTCCATGTCCTTTGACTGCAGGGCCAA  250

seq1  GAAGACAGGATCAGTGCAGAAAAGAAAATATCACAGAAATTTTACTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGGATCAGTGCAGAAAAGAAAATATCACAGAAATTTTACTTCCA  300

seq1  TCAGAAACACCAACTCAAAATGTCTGGAAAAGAAAATTATGAAGGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACACCAACTCAAAATGTCTGGAAAAGAAAATTATGAAGGTGTGG  350

seq1  AGATGTGCCTTGTCCCTTCAGTCTGAATGACATCATAGACTGTAGCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCCTTGTCCCTTCAGTCTGAATGACATCATAGACTGTAGCAATA  400

seq1  TAAACATTTGGCCACAAACCCCCACCTCTATTCTGTAGTTACTGGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTGGCCACAAACCCCCACCTCTATTCTGTAGTTACTGGCCTTT  450

seq1  CTTCTTCCTCTAATGAAATTCACTGCAGAAAAAAAGTTCCTTTTTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTCTAATGAAATTCACTGCAGAAAAAAAGTTCCTTTTTGTTTT  500

seq1  TGTTATTTGTTTGTTTGTTTTTGTTTTGTTTATTTAGCTGTTTAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGTTTGTTTGTTTTTGTTTTGTTTATTTAGCTGTTTAATTATT  550

seq1  TTTCCCAGTATATCATGAAAGAATTTTGTCATTGGAGCCTGAGGCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTATATCATGAAAGAATTTTGTCATTGGAGCCTGAGGCTTCTG  600

seq1  GTGATACTGGATAAACCACCATGTGGTAGGGATCAGGGAAACTTAGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACTGGATAAACCACCATGTGGTAGGGATCAGGGAAACTTAGTGCC  650

seq1  TGCTTTCTTCTTTGATTCATCCCGTTTTGGGGTGGATCTTCCCACCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTCTTTGATTCATCCCGTTTTGGGGTGGATCTTCCCACCTGAA  700

seq1  TTAAGGTATATTCAGATAAGTCTTCAAAGTCATTCCCAGAGAGTTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTATATTCAGATAAGTCTTCAAAGTCATTCCCAGAGAGTTGTCTC  750

seq1  TTAGGTACTTCTAGATTCTGTCAAGTTCAAAATCAATACAAAATATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTACTTCTAGATTCTGTCAAGTTCAAAATCAATACAAAATATCACA  800

seq1  CTTATTTTATGTAACAGTAAGTTTT-GGGGGGCAGACTCTCTCCTCTCCT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTATTTTATGTAACAGTAAGTTTTGGGGGGGCAGACTCTCTCCTCTCCT  850

seq1  ATTTATTTTTCTTAATTTTTTAATTTTGTGAGATGGGTTCCATATTAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTCTTAATTTTTTAATTTTGTGAGATGGGTTCCATATTAAGA  900

seq1  TGTACATTGGCCATT-GCCTAAGGGAAGAGGACGTCTTCCTGATTCAGCT  948
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TGTACATTGGCCATTGGCCTAA-GGAAGAGGACGTCTTCCTGATTCAGCT  949

seq1  CCATGAATGTTTTTATTGTGCAAATTTTCGGATTGCATT-ATTACTTTTT  997
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCATGAATGTTTTTATTGTGCAAATTTTCGGATTGCATTAATTACTTTTT  999

seq1  CTTCTCTTTTCATTTTAACTTTTCCTAGTGCATTCTTAATTTTTCTACTA  1047
      |||||||||||||||| ||||||||| ||||| |||| ||||||||||||
seq2  CTTCTCTTTTCATTTT-ACTTTTCCTGGTGCA-TCTT-ATTTTTCTACTA  1046

seq1  TTGGGTCACTGTTATGTA-CTTTACACTAACTGGTTTTATTTTTTCTCTC  1096
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TTGGGTCACTGTTATGTACCTTTACACTAACTGGGTTTATTTTTTCTCTC  1096

seq1  CATTTTTCTAAAACTACTAATTTGGTTTGCTC-TCCTTATTT  1137
      ||||||||| ||||||||| ||||||| |||| |||||||||
seq2  CATTTTTCT-AAACTACTAGTTTGGTTGGCTCTTCCTTATTT  1137


seq1: chr15_16131214_16132333
seq2: B6Ng01-209D11.g_67_1195 (reverse)

seq1  GGTGGCTAAAGTGTTCTCCTCTATTCTATCAGATTGCACTTTGACTCTTT  50
      ||||||| ||||||||||||| |||||||||   ||||| ||||||||| 
seq2  GGTGGCT-AAGTGTTCTCCTC-ATTCTATCAAGATGCAC-TTGACTCTT-  46

seq1  ATTGCTCCAGTAAATTCTATCATGGAGATATGGTCACAAG-GTGGCTGAA  99
        ||||||||| ||||||||||||   |||| |||||||| | | |||||
seq2  -ATGCTCCAGT-AATTCTATCATGAGAATAT-GTCACAAGTGGGCCTGAA  93

seq1  ATTCAGTGGAGTTTC-AAATA--TAATTCTTCC-AACTC-AGATGTAAAC  144
      ||||||||||||||| |||||   ||||||||| ||||| ||||||||||
seq2  ATTCAGTGGAGTTTCAAAATAATAAATTCTTCCAAACTCAAGATGTAAAC  143

seq1  ACC-TTTGAA--GGAGTT-ACTTGACTTCACTC-ATATAGGCCCTGG-AA  188
      ||| ||||||  | |||| |||||||||||||| ||||||||||||| ||
seq2  ACCTTTTGAAAGGAAGTTAACTTGACTTCACTCAATATAGGCCCTGGAAA  193

seq1  TTAT-AAATGGTTAA--TAAAACTCAATATCAATGGTACTCACTACTATT  235
      |||| ||||||||||   ||||||||||||||||||||||||||||||||
seq2  TTATAAAATGGTTAAATAAAAACTCAATATCAATGGTACTCACTACTATT  243

seq1  -AAGCATAAAATAAATTGTCACACTTTCTATACAATAAATAATGAGTCTA  284
       ||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  AAAGCATAAAATAAATTGTCACACTTCCTGTACAATAAATAATGAGTCTA  293

seq1  TATTATTTATTTATTCACATTTTGCCAAAGCATTTCATCAGTTTTCTATA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTATTTATTCACATTTTGCCAAAGCATTTCATCAGTTTTCTATA  343

seq1  AATCCTGTTAGCTGAAAAATATAGATTATTATCTCCAGTCTTAAAAGTAA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTTAGCTGAAAAATATAGATTATTATCTCCAGTCTTAAAAGTAA  393

seq1  ATATGATTTCCTTTTTGATAAATTCATTTTACCTTATATTTGAGATACCT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTCCTTTTTGATAAATTCATTTTACCTTATATTTGAGATACCT  443

seq1  AATTAAATGTTGTGGTAGATTTAAATTTGGTAATTGATAGTTTGACTTCT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGTTGTGGTAGATTTAAATTTGGTAATTGATAGTTTGACTTCT  493

seq1  CACATGCTCAAATGATGGAATGCTCAAATGCTCTGCTGGAAAATGCTTTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTCAAATGATGGAATGCTCAAATGCTCTGCTGGAAAATGCTTTA  543

seq1  TCTCTTATACAACATATCAAATAATAACTATCTTTACATGGAAAGGGACA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATACAACATATCAAATAATAACTATCTTTACATGGAAAGGGACA  593

seq1  AATCCTAGACTATGAGAATGAAAAATTGTAACAGAGGAGAAGACAGAACT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGACTATGAGAATGAAAAATTGTAACAGAGGAGAAGACAGAACT  643

seq1  TTTAATGCAATGTAAATGACACAGTCTGGCTATGCTTCCAGATTTTATTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCAATGTAAATGACACAGTCTGGCTATGCTTCCAGATTTTATTC  693

seq1  CTGAAGGTCTGATAATCCTTTCCTTATCATTTTTGATGTAGAATCTTATG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTCTGATAATCCTTTCCTTATCATTTTTGATGTAGAATCTTATG  743

seq1  TTACTAAGGCCAGTCTCAAACATCTATGTTGCTGAGGATGGTTTGAATTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGGCCAGTCTCAAACATCTATGTTGCTGAGGATGGTTTGAATTT  793

seq1  CATAACTTCCTGCTTCTATCACTGGCATTTTGAGAGGATAGAACTGCAGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTCCTGCTTCTATCACTGGCATTTTGAGAGGATAGAACTGCAGT  843

seq1  ATGTACAGTTTATTCAGTACTGTGGGCAAAATCTGGTACTCTGGGCAATT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGTTTATTCAGTACTGTGGGCAAAATCTGGTACTCTGGGCAATT  893

seq1  TATGGACATCCATACCACAAAGAAATGTCATTCCAGTCAATTCAATGACC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATCCATACCACAAAGAAATGTCATTCCAGTCAATTCAATGACC  943

seq1  AGAGGGCCTTTAGAGAATTTTTCATGAGGATTTTGTGAACCTCATGAATA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCTTTAGAGAATTTTTCATGAGGATTTTGTGAACCTCATGAATA  993

seq1  ATGTGATTCTTGTATGTTGAACTGGTGTTGATGAGGAAATATTAATAGGG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTCTTGTATGTTGAACTGGTGTTGATGAGGAAATATTAATAGGG  1043

seq1  ATCATAGATCGGAAGTCTCCTGTGCATTATCAAGCCACCCATTTCCATGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGATCGGAAGTCTCCTGTGCATTATCAAGCCACCCATTTCCATGA  1093

seq1  CAATGATGATCACGTCCAGCCCAAAGGATGGAATTC  1120
      ||||||||||||||||||||||||||||||||||||
seq2  CAATGATGATCACGTCCAGCCCAAAGGATGGAATTC  1129


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