BAC Information

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BAC

Clone NameB6Ng01-209E08
Chromosome15 (Build37)4 (Build37)
Map Location 60,608,020 - 60,609,12175,339,086 - 75,339,604
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094, EG632412
Downstream geneLOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209E08.bB6Ng01-209E08.g
ACCGA027931GA027932
length1,1151,171
definitionB6Ng01-209E08.b B6Ng01-209E08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,608,020 - 60,609,121)(75,339,086 - 75,339,604)
sequence
gaattctttatttctgattgtttgtggggagtgaggttgggtaaatgtgc
tcatgataatatgtacatacatgtacagatacaaagatctatacacatgc
atggaggccagaagagaatggtaggtgtcttcctttaagattcaatgata
gatttcctgggctcgcagtctgtcaaagaacctggataagctggaaacca
aagagactcagaggctctcccgcctctgtcctccacagggctggtgttaa
ggcagactgaaggcacacccatcttttttacttgggttctaagatccaaa
ttcagatctttcagccaacacataaaaatacatctctctatcccctgttt
caggtttatgagaaccccacagggcaacatctaaaatctttccttagaca
caaaagctctatattaaaaagtgtctgcttttattgggctaaagtgctaa
cactcatctttaatttgtttattcagaagctgttctaagcagggcttata
acttttgtatctctcttttgcctcagttgatgcccaggctccaggtgaac
tgtgtttatctggtctcaaaaatccttactgttcaattcacaatctagat
tcccagatctgggtgcctggtcccctgtttacctgtaagaaattctacta
tctagccttttgtacacctaatcctagttgtttaagggtatgatcagaga
ctaactccacattaagagaaaagcaagaatacaaagtaggtcagaaaggc
tccccaaaaagcagaggaagacagtctgtttgcagggacattccaggggg
ggggtgagtttcgaattataatgtctctagacaagagacatataagtcta
aaacccctgactcattccaatctcaccaatatgtgtggctttggcaagta
attgcttcttgccttgcttctgggaaaggtaactgctaacactttgaatt
attcctgtaattctatttattatggcaaaatcatttatcattttattagt
atcttggcatctcattcaaaaaatcctagaattacgtatagatcaccata
ttaaaatacttagtgagagatgcctccgtcaatctgaagggccgctgtgc
tctaagggcaagtgg
gaattctcacctgaggaataccgaatggcagagaatcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcagatgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
gtattgcaggcttgtgcaaccactctggaaatcagtctggcgtttcctca
ggaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaggaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtaaagactgccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgctggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaagtggccaggagctgagggcatctgcaccctatag
cgacatattatgactacagtaccccggagctctgactctagctgcatatg
tatcaaagatgctagtcgcatcactgcaagagaagccatgacacgcgaac
ctttaattgcccagtcagggaacccagtactaagggtactgggtgggatc
tagtggacatacataaatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_60608020_60609121
seq2: B6Ng01-209E08.b_43_1157

seq1  GAATTCTTTATTTCTGATTGTTTGTGGGGAGTGAGGTTGGGTAAATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTCTGATTGTTTGTGGGGAGTGAGGTTGGGTAAATGTGC  50

seq1  TCATGATAATATGTACATACATGTACAGATACAAAGATCTATACACATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAATATGTACATACATGTACAGATACAAAGATCTATACACATGC  100

seq1  ATGGAGGCCAGAAGAGAATGGTAGGTGTCTTCCTTTAAGATTCAATGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCCAGAAGAGAATGGTAGGTGTCTTCCTTTAAGATTCAATGATA  150

seq1  GATTTCCTGGGCTCGCAGTCTGTCAAAGAACCTGGATAAGCTGGAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTGGGCTCGCAGTCTGTCAAAGAACCTGGATAAGCTGGAAACCA  200

seq1  AAGAGACTCAGAGGCTCTCCCGCCTCTGTCCTCCACAGGGCTGGTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCAGAGGCTCTCCCGCCTCTGTCCTCCACAGGGCTGGTGTTAA  250

seq1  GGCAGACTGAAGGCACACCCATCTTTTTTACTTGGGTTCTAAGATCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTGAAGGCACACCCATCTTTTTTACTTGGGTTCTAAGATCCAAA  300

seq1  TTCAGATCTTTCAGCCAACACATAAAAATACATCTCTCTATCCCCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCTTTCAGCCAACACATAAAAATACATCTCTCTATCCCCTGTTT  350

seq1  CAGGTTTATGAGAACCCCACAGGGCAACATCTAAAATCTTTCCTTAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATGAGAACCCCACAGGGCAACATCTAAAATCTTTCCTTAGACA  400

seq1  CAAAAGCTCTATATTAAAAAGTGTCTGCTTTTATTGGGCTAAAGTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTCTATATTAAAAAGTGTCTGCTTTTATTGGGCTAAAGTGCTAA  450

seq1  CACTCATCTTTAATTTGTTTATTCAGAAGCTGTTCTAAGCAGGGCTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCTTTAATTTGTTTATTCAGAAGCTGTTCTAAGCAGGGCTTATA  500

seq1  ACTTTTGTATCTCTCTTTTGCCTCAGTTGATGCCCAGGCTCCAGGTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTATCTCTCTTTTGCCTCAGTTGATGCCCAGGCTCCAGGTGAAC  550

seq1  TGTGTTTATCTGGTCTCAAAAATCCTTACTGTTCAATTCACAATCTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATCTGGTCTCAAAAATCCTTACTGTTCAATTCACAATCTAGAT  600

seq1  TCCCAGATCTGGGTGCCTGGTCCCCTGTTTACCTGTAAGAAATTCTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATCTGGGTGCCTGGTCCCCTGTTTACCTGTAAGAAATTCTACTA  650

seq1  TCTAGCCTTTTGTACACCTAATCCTAGTTGTTTAAGGGTATGATCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTTTTGTACACCTAATCCTAGTTGTTTAAGGGTATGATCAGAGA  700

seq1  CTAACTCCACATTAAGAGAAAAGCAAGAATACAAAGTAGGTCAGAAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCACATTAAGAGAAAAGCAAGAATACAAAGTAGGTCAGAAAGGC  750

seq1  TCCCCAAAAAGCAGAGGAAGACAGTCTGTTTGCAGGGACATTCCAGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAAAGCAGAGGAAGACAGTCTGTTTGCAGGGACATTCCAGGGGG  800

seq1  GGGGTGAGTTTCGAATTATAATGTCTCTAGACAAGAGACATAT-AGTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGGTGAGTTTCGAATTATAATGTCTCTAGACAAGAGACATATAAGTCTA  850

seq1  AAACCCCTGACTCATTCCAATCTCACCAATATGTGTGGCTTTGGCAAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTGACTCATTCCAATCTCACCAATATGTGTGGCTTTGGCAAGTA  900

seq1  ATTGCTTCTTGCCTTGCTTCTGGGAAAGGTAACTGCTAACACTTTGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTTGCCTTGCTTCTGGGAAAGGTAACTGCTAACACTTTGAATT  950

seq1  A-TCCTGTAA-TCTA-TTATTATGGCAAAAT-AATTATCATTTTA-TAGT  994
      | |||||||| |||| ||||||||||||||| | ||||||||||| ||||
seq2  ATTCCTGTAATTCTATTTATTATGGCAAAATCATTTATCATTTTATTAGT  1000

seq1  ATCTTGGCATCTCATTCAAAAAATCTTAGATCACCGTATAGATCACCATA  1044
      ||||||||||||||||||||||||| ||||    ||||||||||||||||
seq2  ATCTTGGCATCTCATTCAAAAAATCCTAGAATTACGTATAGATCACCATA  1050

seq1  T--AAATACTTAGTGAGAGATGCTCCCGTC-ATCTG-AGGGCTGCTGTGC  1090
      |  ||||||||||||||||||||  ||||| ||||| ||||| |||||||
seq2  TTAAAATACTTAGTGAGAGATGCCTCCGTCAATCTGAAGGGCCGCTGTGC  1100

seq1  TC--AGGGC-AGTGG  1102
      ||  ||||| |||||
seq2  TCTAAGGGCAAGTGG  1115

seq1: chr4_75339086_75339604
seq2: B6Ng01-209E08.g_912_1234

seq1  AAGGACCCAGACATAGCTGTCTCTTGTGAGACTCTGCTGGGCCCTAGCAA  50
      |||||||||||  |||||||||||||||||||| ||||||| ||||||||
seq2  AAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAA  50

seq1  --ACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGTGCCCC  98
        ||||||||||||||||||||||||||| |||||||||||||| || ||
seq2  ACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAG-GCTCC  99

seq1  CAATGGAGGAGCTAGAGAAAGTAACCAAGGAGCTGGGGGGGATCTGCAAC  148
      ||||||||||||||||| ||||  || ||||||| | ||| |||||| ||
seq2  CAATGGAGGAGCTAGAG-AAGTGGCC-AGGAGCT-GAGGGCATCTGC-AC  145

seq1  CCTATAGGTGAAACAACATTATGAACTAACCAGTACCCCCCGGAGCTCGT  198
      |||||| | ||    | |||||| ||||  |||||  ||||||||||| |
seq2  CCTATA-GCGA---CATATTATG-ACTA--CAGTA--CCCCGGAGCTC-T  185

seq1  GTCTCTA---GCATATGTATCAGAAGATGGCCTAGTTGGCCATCAATGGA  245
      | |||||   |||||||||||| ||||||  ||||| |  ||||| || |
seq2  GACTCTAGCTGCATATGTATCA-AAGATG--CTAGTCG--CATCACTGCA  230

seq1  AAGAAAGGCCCATTGGTCATGC-AAACTTTATATGCCTCAGTACAGGGGA  294
      |   |||  ||||  | || || || |||||  |||| |||| || ||||
seq2  AGAGAAG--CCAT--GACACGCGAACCTTTAATTGCC-CAGT-CA-GGGA  273

seq1  ACGCCAGTGCCAAGAAATGAGAGTGGGTGGGTGGGGGAGTGGGTGGGGTA  344
      || ||||| | ||                    ||| | ||||||||   
seq2  AC-CCAGTACTAA--------------------GGGTACTGGGTGGG---  299

seq1  GCGTGTGGGGGACTTTTGGGATAGCAATGGAAATGTAAATGAAATAAATA  394
         | | | |||| |     | |  |||    ||                
seq2  --ATCTAGTGGACAT-----ACATAAAT---CAT----------------  323

seq1  CCTAATAAAAAGTAAAATAAATAAAATAAAGTACAATAGGAAATATTAAT  444
                                                        
seq2  --------------------------------------------------  323

seq1  ATAGAAAGATTAGTTTCTATTTATAATTTTTATAAGACTTTAAGTTCATT  494
                                                        
seq2  --------------------------------------------------  323

seq1  TTCCCCGTGGACATACATAAATCAT  519
                               
seq2  -------------------------  323