BAC Information

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BAC

Clone NameB6Ng01-210O21
Chromosome15 (Build37)
Map Location 49,443,736 - 49,600,870
singlet/doubletdoublet
Overlap geneLOC100039539, LOC665160
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneTrps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210O21.bB6Ng01-210O21.g
ACCGA029139GA029140
length9841,174
definitionB6Ng01-210O21.b B6Ng01-210O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,600,351 - 49,600,870)(49,443,736 - 49,444,899)
sequence
gaattcaccagagacctgggaggtaagagactttcaggaatcagagtgag
gggccttagatggcgtgtctgacagtaggaaaagggaacttatagaaccc
acctctaacaggaagataggacatcaagtgagggaaggggttgccatccc
acagtcacatctctgatccataattatttccgtctgaaagaattacaggg
atggaaatggagagaggcccgaggaaaagaagattcagctacaggaccaa
agtgagatctagctcaaggggtgattccaagggctgacactattactgag
gctatggagcactcacaaaaagagacctatcatgactgccctctgaaaga
tccaacaagcagttaaaagagtaagacgcagatatttgcacccaaacaat
ggacagaaacagctgacctttgttgaattagggaaggctgaaagaagcta
aggagaaggacaatcctgtagaaggaccaacagcctcaattaatgtagac
ccctgagatctctcatacactagaccaccaaacaatacagcatacaccag
ctgatatgatacccccaacacacgtacagtagaggacttccgggtctgtg
ttcattcagagatgatatacctaaccctcgagagactggaggacctaggg
agtttagaggtcaggtagggtgggggttggggcatccacttggagacagg
gatgatggggaagaagtacaggatgtggactggccagagggtggatgcgg
gagcacagtaatggaatatggagtataaatataaattaatctaaaaatga
aaataaattatgaaattaaagaaacatctaatataaaaataaaaagaaaa
agtactgaggatctcttttttttttttttttttttcattctatgtaaact
cgaaccaatctggaatccaattcggtatgtaaattaattattcacctgtg
cagttcattaataccttgatcaattcattaatgg

gaattcttttaaatatatatatatatatatatataattttcataaaacat
tcagagtattctgtgctaaagcttttaaaaatacataaaactatatgtgt
cccatttcttgtcacagaataattttacattcttaaaaataacatttctt
ctcctgggatcaacacttgcctcataactgataatcattacttcaataat
tttctaagatatttttctaataattacagatgcacagtgtatatacagaa
aaccttgttataattaatatacacttaagagtcagtcctaacttgaaggg
atttacatcttgttatttacaaaatgaagtgatagtttaatatgttgtaa
tatcacagtatgttactcctcattgaaatatatactgatatattatagat
aattgtggtaatgaataaagcatctttaaacatctatttggagatttttg
tgtggaagtcatttttaatggctgcactagtaaatatattcacagtgtct
agatcaagtaaccaatacctgttctagaaaactatcaaaatatttaatag
ctcacattctcagtactgccacatgttctaatttctgaaattttactttg
tgtctgcgattaattttataaaatgtttatgtactattactcacaattta
cattttgcctgtatataattatctttctgttattctaattaagtatatgc
caaatatttagaaattttaaaattaaagtttcatttttcattaatttcat
tttagtttatctgatttttttcctctgtctattattattattactattgc
tattattattattttagaaaaatccactaaaccttttttttttccgtgga
acagattttttttttctcaagaccctaattttcttctccagttaaacgat
ccataatatattttcctaaagtaccacatttgtctttttatcactgctgt
ctatttgtttcatttctctttatcaaaagatgagagctggcataaagcac
tgcctcagtgttcttctacagattaacaggaaagttactacaaagtaaaa
aaatgccttagctatagttcaattctgtaggccttcactaaacttacaga
aaaggtgtgtcaattaagctacagtggcatttagtgtctaacaagaaacc
gattctaggcagtgttttctgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49600351_49600870
seq2: B6Ng01-210O21.b_507_1027 (reverse)

seq1  CCATTAATGAATTGATCAAGGTATTTATGAACTGCACAGTTGAATAATTA  50
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  CCATTAATGAATTGATCAAGGTATTAATGAACTGCACAGGTGAATAATTA  50

seq1  ATTTACATACC-AATT-GATTTCAGATTGGTCTGAGTCTACATAGAATG-  97
      ||||||||||| |||| |||| |||||||||  |||| ||||||||||| 
seq2  ATTTACATACCGAATTGGATTCCAGATTGGTTCGAGTTTACATAGAATGA  100

seq1  TAAAAAAAAAAAAAAAAAAGAGATCCTCAGTACTTTTTCTTTTT-TTTTC  146
       ||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  AAAAAAAAAAAAAAAAAAAGAGATCCTCAGTACTTTTTCTTTTTATTTTT  150

seq1  TTATTAGATGTTTTCTTTAATTTTCATTATTTATTTTCATTTTTAAATTA  196
       ||||||||| ||||||||| |||||| ||||||||||||||||| ||||
seq2  ATATTAGATG-TTTCTTTAA-TTTCATAATTTATTTTCATTTTTAGATTA  198

seq1  ATTTATATTTTATACTCCATATTCCATTACTGTGCTCCCGCATCCACCCT  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATA-TTTATACTCCATATTCCATTACTGTGCTCCCGCATCCACCCT  247

seq1  CTGGCCAGTCCACATCCTGTACTTCTTCCCCATCATCCCTGTCTCCAAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGTCCACATCCTGTACTTCTTCCCCATCATCCCTGTCTCCAAGT  297

seq1  GGATGCCCCAACCCCCACCCTACCTGACCTCTAAACTCCCTAGGTCCTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCCAACCCCCACCCTACCTGACCTCTAAACTCCCTAGGTCCTCC  347

seq1  AGTCTCTCGAGGGTTAGGTATATCATCTCTGAATGAACACAGACCCGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCGAGGGTTAGGTATATCATCTCTGAATGAACACAGACCCGGAA  397

seq1  GTCCTCTACTGTACGTGTGTTGGGGGTATCATATCAGCTGGTGTATGCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTACTGTACGTGTGTTGGGGGTATCATATCAGCTGGTGTATGCTG  447

seq1  TATTGTTTGGTGGTCTAGTGTATGAGAGATCTCAGGGGTCTACATTAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGGTGGTCTAGTGTATGAGAGATCTCAGGGGTCTACATTAATT  497

seq1  GAGGCTGTTGGTCCTTCTACAGGA  520
      ||||||||||||||||||||||||
seq2  GAGGCTGTTGGTCCTTCTACAGGA  521


seq1: chr15_49443736_49444899
seq2: B6Ng01-210O21.g_64_1237

seq1  GAATTCTTTTAAATATATATATATATATATATATAATTTTCATAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATATATATATATATATATATATAATTTTCATAAAACAT  50

seq1  TCAGAGTATTCTGTGCTAAAGCTTTTAAAAATACATAAAACTATATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTATTCTGTGCTAAAGCTTTTAAAAATACATAAAACTATATGTGT  100

seq1  CCCATTTCTTGTCACAGAATAATTTTACATTCTTAAAAATAACATTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCTTGTCACAGAATAATTTTACATTCTTAAAAATAACATTTCTT  150

seq1  CTCCTGGGATCAACACTTGCCTCATAACTGATAATCATTACTTCAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGATCAACACTTGCCTCATAACTGATAATCATTACTTCAATAAT  200

seq1  TTTCTAAGATATTTTTCTAATAATTACAGATGCACAGTGTATATACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGATATTTTTCTAATAATTACAGATGCACAGTGTATATACAGAA  250

seq1  AACCTTGTTATAATTAATATACACTTAAGAGTCAGTCCTAACTTGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTTATAATTAATATACACTTAAGAGTCAGTCCTAACTTGAAGGG  300

seq1  ATTTACATCTTGTTATTTACAAAATGAAGTGATAGTTTAATATGTTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATCTTGTTATTTACAAAATGAAGTGATAGTTTAATATGTTGTAA  350

seq1  TATCACAGTATGTTACTCCTCATTGAAATATATACTGATATATTATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGTATGTTACTCCTCATTGAAATATATACTGATATATTATAGAT  400

seq1  AATTGTGGTAATGAATAAAGCATCTTTAAACATCTATTTGGAGATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGTAATGAATAAAGCATCTTTAAACATCTATTTGGAGATTTTTG  450

seq1  TGTGGAAGTCATTTTTAATGGCTGCACTAGTAAATATATTCACAGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGTCATTTTTAATGGCTGCACTAGTAAATATATTCACAGTGTCT  500

seq1  AGATCAAGTAACCAATACCTGTTCTAGAAAACTATCAAAATATTTAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGTAACCAATACCTGTTCTAGAAAACTATCAAAATATTTAATAG  550

seq1  CTCACATTCTCAGTACTGCCACATGTTCTAATTTCTGAAATTTTACTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTCTCAGTACTGCCACATGTTCTAATTTCTGAAATTTTACTTTG  600

seq1  TGTCTGCGATTAATTTTATAAAATGTTTATGTACTATTACTCACAATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCGATTAATTTTATAAAATGTTTATGTACTATTACTCACAATTTA  650

seq1  CATTTTGCCTGTATATAATTATCTTTCTGTTATTCTAATTAAGTATATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCCTGTATATAATTATCTTTCTGTTATTCTAATTAAGTATATGC  700

seq1  CAAATATTTAGAAATTTTAAAATTAAAGTTTCATTTTTCATTAATTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTAGAAATTTTAAAATTAAAGTTTCATTTTTCATTAATTTCAT  750

seq1  TTTAGTTTATCTGATTTTTTTCCTCTGTCTATTATTATTATTACTATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTATCTGATTTTTTTCCTCTGTCTATTATTATTATTACTATTGC  800

seq1  TATTATTATTATTTTAGAAAAATCCACTAA--CCTTTTTTTTTCCGTGGA  848
      ||||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  TATTATTATTATTTTAGAAAAATCCACTAAACCTTTTTTTTTTCCGTGGA  850

seq1  ACAGA-TTTTTTTTTCTCAAGACCCTAA-TTTCTTCTCCAGTTAAACGAT  896
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGATTTTTTTTTTCTCAAGACCCTAATTTTCTTCTCCAGTTAAACGAT  900

seq1  CCATAATATATTTTCCTAAAGTACCACATTTGTC-TTTTATCACTGCTGT  945
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCATAATATATTTTCCTAAAGTACCACATTTGTCTTTTTATCACTGCTGT  950

seq1  CTATTTGTTTCATTTCTCTTTATCAAAAAGATGAGAGCTGGCATAAAGCA  995
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTATTTGTTTCATTTCTCTTTATC-AAAAGATGAGAGCTGGCATAAAGCA  999

seq1  CTGCCTCAGTG-TCTTCTACAGATTAACAGG-AAGTTACTACAAAGTAAA  1043
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  CTGCCTCAGTGTTCTTCTACAGATTAACAGGAAAGTTACTACAAAGTAAA  1049

seq1  AAAATGCC-TAGCTATAG-TCAA-TCTGTAGCCCTTCACTAAACTTACCA  1090
      |||||||| ||||||||| |||| ||||||| ||||||||||||||| ||
seq2  AAAATGCCTTAGCTATAGTTCAATTCTGTAGGCCTTCACTAAACTTA-CA  1098

seq1  GAAA--GTGTGTCAATTAGGTTACAGTGGCATTTAGTTGTCTACCAGGAA  1138
      ||||  |||||||||||| | ||||||||||||||| |||||| || |||
seq2  GAAAAGGTGTGTCAATTAAGCTACAGTGGCATTTAG-TGTCTAACAAGAA  1147

seq1  AACAGATCTAGGCAGTG-TTTCTGAAC  1164
      | |   ||||||||||| |||||||||
seq2  ACCGATTCTAGGCAGTGTTTTCTGAAC  1174


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