BAC Information

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BAC

Clone NameB6Ng01-214F05
Chromosome15 (Build37)
Map Location 82,861,737 - 83,087,366
singlet/doubletdoublet
Overlap geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt
Upstream geneXrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
Downstream geneLOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214F05.bB6Ng01-214F05.g
ACCGA031604GA031605
length1,1531,130
definitionB6Ng01-214F05.b B6Ng01-214F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,086,203 - 83,087,366)(82,861,737 - 82,862,857)
sequence
gaattcactatgtagcctaggatgacctttaacttttgattctcctgcct
ccattcctcaaatgctgagtttgaaggtgggcgccaccaccacacttggt
tttatacagggctggggtttgaacctaggactcatgcctgctctccatcg
ctgaggcccgtgcttcccaatggcttgctcttctcaccctctgcctcaca
ctgaggacttcctccttggtgagaacgctgactcttgaagatcagaatcc
tcttagccccccaaggcaggggatctgacctaacttcctgttccctttgc
agtgctggggctagacccaggggggccaaacctttgccagggctaagcaa
gctctaccaggaagcccctgcagcttctgaaaacttattcacttccttct
tggctttggaaaacctccctcaggccccaggagagtatagatggaacttt
agatggtttttacaaccgaggttttggcccctctacagatgcgttcttct
ctgtctcctctcaggtcctggtgtcccccagaaagagtcctttccagttc
tctcgttcaccctggaaacacttgggcagctgggtggtttattccaggtg
cttgccctcagtcccacttgcttccaggtttgctatgatggtatctcgtc
caggccttcccaaggctcccaaagcaggtttgttccctgcaggagcacag
gtaaactttaaccattcactctgcgggagttaggttacagaccctgtggc
tgcccatgcaccccttccccggctccccaaccattctcctgtggcagaga
aagttgataaattgataagccagtctactccggccttccagtctacttcc
ccaccctcaacccaggcctaagggcatccggaattataattactttagct
agtgcgtcccagcctggtaactccaggcatacaagcggggcaaagatgaa
gccttcctaaaaggacactttggcattcagactattaaaacagtgaaatt
cagaaacagaaactattcttcccaggaacctgtgctgatgagagaagttt
tgagccaaggcagcagaggtacttttctccagagagtaccacctgtggcc
accttacgaaagactcagatggtcaatgacctgacactgtgctgagtttt
agc
gaattctttttatttttccagggatgatggttgttgaggcacaatctcac
tctgtggccctcgccaatctggaactaatagcaatcctcctgcctcagcc
ttctgagtcctgggattacaggcaccagccacaacatctcacataagtgg
aagttcaaccactgtcaacagcaggtccattctaccttttcgctgtcttt
tcatggtctggagtgggtgggcaatgtaggttgagcaagagtaaagaaga
caggccacagggttggtacccaaactgctctagaggctacgtgttggctc
ctgcctcctcagagtaaagtttcctggggagaatcttccttgcaaagaaa
agtgatctggtcgatcagcggagcccagtgggcaggggaggctgaggctg
aggctgaccctggcctgcagcctgacttctgaattttctgctgtctgact
ccacacatgttgatagacatccctgggtttgtctccctgtcagtgagatg
atgctgaggacattaaaggctcactacacgctaattcctgatggtcagat
ataaatgaaaaaggggacatgacataatccagggacaaagaacccccagt
cacctcatcaaagtcaaagtggcaccgaggagaggcgttggtggacaaag
tgctcacagcataagtgtaaggaccagagttcgaaaccctggaattcgaa
taaagcagagtagcacgtgtctctgatcttattgttcctgccacaagaca
ggaagcagagacagaatccttggaagcttgcaggccagccagcctggcat
tcacagcagtgacagacagacagaccagacagacggatgggcgggtgggt
gggcaggcagacaacagacaggcaggcaggctatttcaaacaggtagaag
gcaaggatgttcacccgaggcttggcctctgaccttcgtaaactcactcg
gcacacacaggcacacgcacacacacactgatttattaaattattaagta
aatgtcaaacaggagacagttagtactcagcctccactagtggaagtgtt
cctggtcagcaatggatcagtctgctagctcaagtcccaaggcaaagaac
aacctatagtgcctgacgaaacattaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83086203_83087366
seq2: B6Ng01-214F05.b_50_1202 (reverse)

seq1  GCT-AACCTCAGCA-GTTGTCA-GTCACTGACCATCTG-GTCTTTTCGTA  46
      ||| || |||||||   ||||| |||| |||||||||| ||| |||||||
seq2  GCTAAAACTCAGCACAGTGTCAGGTCATTGACCATCTGAGTC-TTTCGTA  49

seq1  AGGTGGGCCACAGGTGGTAACTCTCTGGGAGAAAAGTTTCCCTCTGGCTG  96
      |||| ||||||||||||| ||||||| |||||||||  | ||||| ||||
seq2  AGGT-GGCCACAGGTGGT-ACTCTCT-GGAGAAAAG--TACCTCT-GCTG  93

seq1  CCCTTGGCTCAAAACTTTCTCCTCATCCAGCACAGGTTTCCTGGGAAGAA  146
       |||||||||||||| |||| ||||| ||||||||| |||||||||||||
seq2  -CCTTGGCTCAAAAC-TTCT-CTCAT-CAGCACAGG-TTCCTGGGAAGAA  138

seq1  TTAGTTTCTGTTTCTGAATTTTCACTGTTTTAATAGTCTGAATGCCAAAG  196
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -TAGTTTCTGTTTCTGAA-TTTCACTGTTTTAATAGTCTGAATGCCAAAG  186

seq1  TGTCCTTTTAGGAAGGCTTCATCTTTGCCCCGCTTGTTATGCCTGGAGTT  246
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTCCTTTTAGGAAGGCTTCATCTTTGCCCCGCTTG-TATGCCTGGAGTT  235

seq1  ACCAGGCTGGAACGCACTAGCTAAAGTAATTATAATTCCGGATGCCCTTA  296
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGGACGCACTAGCTAAAGTAATTATAATTCCGGATGCCCTTA  285

seq1  GGCCTGGGTTGAGGGTGGGGAAGTAGACTGGAAGGCCGGAGTAGACTGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGTTGAGGGTGGGGAAGTAGACTGGAAGGCCGGAGTAGACTGGC  335

seq1  TTATCAATTTATCAACTTTCTCTGCCACAGGAGAATGGTTGGGGAGCCGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATTTATCAACTTTCTCTGCCACAGGAGAATGGTTGGGGAGCCGG  385

seq1  GGAAGGGGTGCATGGGCAGCCACAGGGTCTGTAACCTAACTCCCGCAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGTGCATGGGCAGCCACAGGGTCTGTAACCTAACTCCCGCAGAG  435

seq1  TGAATGGTTAAAGTTTACCTGTGCTCCTGCAGGGAACAAACCTGCTTTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTTAAAGTTTACCTGTGCTCCTGCAGGGAACAAACCTGCTTTGG  485

seq1  GAGCCTTGGGAAGGCCTGGACGAGATACCATCATAGCAAACCTGGAAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGGGAAGGCCTGGACGAGATACCATCATAGCAAACCTGGAAGCA  535

seq1  AGTGGGACTGAGGGCAAGCACCTGGAATAAACCACCCAGCTGCCCAAGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGACTGAGGGCAAGCACCTGGAATAAACCACCCAGCTGCCCAAGTG  585

seq1  TTTCCAGGGTGAACGAGAGAACTGGAAAGGACTCTTTCTGGGGGACACCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGGTGAACGAGAGAACTGGAAAGGACTCTTTCTGGGGGACACCA  635

seq1  GGACCTGAGAGGAGACAGAGAAGAACGCATCTGTAGAGGGGCCAAAACCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGAGGAGACAGAGAAGAACGCATCTGTAGAGGGGCCAAAACCT  685

seq1  CGGTTGTAAAAACCATCTAAAGTTCCATCTATACTCTCCTGGGGCCTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGTAAAAACCATCTAAAGTTCCATCTATACTCTCCTGGGGCCTGAG  735

seq1  GGAGGTTTTCCAAAGCCAAGAAGGAAGTGAATAAGTTTTCAGAAGCTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTTCCAAAGCCAAGAAGGAAGTGAATAAGTTTTCAGAAGCTGCA  785

seq1  GGGGCTTCCTGGTAGAGCTTGCTTAGCCCTGGCAAAGGTTTGGCCCCCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCCTGGTAGAGCTTGCTTAGCCCTGGCAAAGGTTTGGCCCCCCT  835

seq1  GGGTCTAGCCCCAGCACTGCAAAGGGAACAGGAAGTTAGGTCAGATCCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAGCCCCAGCACTGCAAAGGGAACAGGAAGTTAGGTCAGATCCCC  885

seq1  TGCCTTGGGGGGCTAAGAGGATTCTGATCTTCAAGAGTCAGCGTTCTCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGGGGGCTAAGAGGATTCTGATCTTCAAGAGTCAGCGTTCTCAC  935

seq1  CAAGGAGGAAGTCCTCAGTGTGAGGCAGAGGGTGAGAAGAGCAAGCCATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGAAGTCCTCAGTGTGAGGCAGAGGGTGAGAAGAGCAAGCCATT  985

seq1  GGGAAGCACGGGCCTCAGCGATGGAGAGCAGGCATGAGTCCTAGGTTCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCACGGGCCTCAGCGATGGAGAGCAGGCATGAGTCCTAGGTTCAA  1035

seq1  ACCCCAGCCCTGTATAAAACCAAGTGTGGTGGTGGCGCCCACCTTCAAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCCCTGTATAAAACCAAGTGTGGTGGTGGCGCCCACCTTCAAAC  1085

seq1  TCAGCATTTGAGGAATGGAGGCAGGAGAATCAAAAGTTAAAGGTCATCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTTGAGGAATGGAGGCAGGAGAATCAAAAGTTAAAGGTCATCCT  1135

seq1  AGGCTACATAGTGAATTC  1164
      ||||||||||||||||||
seq2  AGGCTACATAGTGAATTC  1153

seq1: chr15_82861737_82862857
seq2: B6Ng01-214F05.g_65_1194

seq1  GAATTCTTTTTATTTTTCCAGGGATGATGGTTGTTGAGGCACAATCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTTTTCCAGGGATGATGGTTGTTGAGGCACAATCTCAC  50

seq1  TCTGTGGCCCTCGCCAATCTGGAACTAATAGCAATCCTCCTGCCTCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCCCTCGCCAATCTGGAACTAATAGCAATCCTCCTGCCTCAGCC  100

seq1  TTCTGAGTCCTGGGATTACAGGCACCAGCCACAACATCTCACATAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCCTGGGATTACAGGCACCAGCCACAACATCTCACATAAGTGG  150

seq1  AAGTTCAACCACTGTCAACAGCAGGTCCATTCTACCTTTTCGCTGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAACCACTGTCAACAGCAGGTCCATTCTACCTTTTCGCTGTCTTT  200

seq1  TCATGGTCTGGAGTGGGTGGGCAATGTAGGTTGAGCAAGAGTAAAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCTGGAGTGGGTGGGCAATGTAGGTTGAGCAAGAGTAAAGAAGA  250

seq1  CAGGCCACAGGGTTGGTACCCAAACTGCTCTAGAGGCTACGTGTTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACAGGGTTGGTACCCAAACTGCTCTAGAGGCTACGTGTTGGCTC  300

seq1  CTGCCTCCTCAGAGTAAAGTTTCCTGGGGAGAATCTTCCTTGCAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTCAGAGTAAAGTTTCCTGGGGAGAATCTTCCTTGCAAAGAAA  350

seq1  AGTGATCTGGTCGATCAGCGGAGCCCAGTGGGCAGGGGAGGCTGAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTGGTCGATCAGCGGAGCCCAGTGGGCAGGGGAGGCTGAGGCTG  400

seq1  AGGCTGACCCTGGCCTGCAGCCTGACTTCTGAATTTTCTGCTGTCTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACCCTGGCCTGCAGCCTGACTTCTGAATTTTCTGCTGTCTGACT  450

seq1  CCACACATGTTGATAGACATCCCTGGGTTTGTCTCCCTGTCAGTGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGTTGATAGACATCCCTGGGTTTGTCTCCCTGTCAGTGAGATG  500

seq1  ATGCTGAGGACATTAAAGGCTCACTACACGCTAATTCCTGATGGTCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGGACATTAAAGGCTCACTACACGCTAATTCCTGATGGTCAGAT  550

seq1  ATAAATGAAAAAGGGGACATGACATAATCCAGGGACAAAGAACCCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAAAAGGGGACATGACATAATCCAGGGACAAAGAACCCCCAGT  600

seq1  CACCTCATCAAAGTCAAAGTGGCACCGAGGAGAGGCGTTGGTGGACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATCAAAGTCAAAGTGGCACCGAGGAGAGGCGTTGGTGGACAAAG  650

seq1  TGCTCACAGCATAAGTGTAAGGACCAGAGTTCGAAACCCTGGAATTCGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAGCATAAGTGTAAGGACCAGAGTTCGAAACCCTGGAATTCGAA  700

seq1  TAAAGCAGAGTAGCACGTGTCTCTGATCTTATTGTTCCTGCCACAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGAGTAGCACGTGTCTCTGATCTTATTGTTCCTGCCACAAGACA  750

seq1  GGAAGCAGAGACAGAATCCTTGGAAGCTTGCAGGCCAGCCAGCCTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGAGACAGAATCCTTGGAAGCTTGCAGGCCAGCCAGCCTGGCAT  800

seq1  TCACAGCAGTGACAGACAGACAGACCAGACAGACGGATGGGCGGGTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAGTGACAGACAGACAGACCAGACAGACGGATGGGCGGGTGGGT  850

seq1  GGGCAGGCAGACAAACAGACAGGCAGGCAGGCTATTTCAAACAGGTAGAA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGCAGAC-AACAGACAGGCAGGCAGGCTATTTCAAACAGGTAGAA  899

seq1  GGCAAGGATGTTCACCCGAGGC-TGGCCTCTGACCTTCGTAAACTCACCT  949
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  GGCAAGGATGTTCACCCGAGGCTTGGCCTCTGACCTTCGTAAACTCA-CT  948

seq1  CGGCACACACAGGCACACGCACACACACACATGATTTATAAAATAAATAA  999
      |||||||||||||||||||||||||||||| |||||||| |||| | |||
seq2  CGGCACACACAGGCACACGCACACACACAC-TGATTTATTAAATTATTAA  997

seq1  GTAAA-GTCAAACAGAGAACAGTTAGTACTCAGCCTCCAC-AGTGG-AGT  1046
      ||||| |||||||||   |||||||||||||||||||||| ||||| |||
seq2  GTAAATGTCAAACAGGAGACAGTTAGTACTCAGCCTCCACTAGTGGAAGT  1047

seq1  GTCCCTGGGTCAGCAATGGACCAG-CTGCTAGC-CAGG--CCAAGGC-AA  1091
      || ||| ||||||||||||| ||| |||||||| || |  ||||||| ||
seq2  GTTCCT-GGTCAGCAATGGATCAGTCTGCTAGCTCAAGTCCCAAGGCAAA  1096

seq1  GAACA---CATAGTGCCTGAC-AGACATTACCCA  1121
      |||||    |||||||||||| | ||||||||||
seq2  GAACAACCTATAGTGCCTGACGAAACATTACCCA  1130