BAC Information

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BAC

Clone NameB6Ng01-215K15
Chromosome15 (Build37)
Map Location 100,288,881 - 100,489,959
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2
Upstream gene4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneEla1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215K15.bB6Ng01-215K15.g
ACCGA032561GA032562
length1,063368
definitionB6Ng01-215K15.b B6Ng01-215K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,488,905 - 100,489,959)(100,288,881 - 100,289,254)
sequence
gaattctctccctcccctgcgccctttttgtcttttaatttaagagtcac
taggctttctagtaatgagcaagtccacagcaagaatttcctggtatact
gtgtaacatcttctaggtttcaaatactccgttcccaagctggtcggtcc
acccatgagctgactggcagcatccctcagtccctcccacacccctgagg
tcaggctccaaaacgcccacatctggccctcctcttcctctccaccctga
tcctagaaactgaagtttacccacatagaggggaagagaatggcggttgg
gggagaacaggctataaccagtacactgaggaagatgtctgggaggcttg
tcctcaagttggtgtagaagaaaagttagagccctgggccagttaggtgg
ttggttgactgggggctggccaggcaggcttgataccctgaggtcaattc
tagaaccagtgtttcaaaaagcaatccggatgcagtataatcccagtgtc
tctggctctttctgtctctctgtctctctgtgtctctgtctctgtctctc
tctgtctctctctctctctctctctccacatacacacacacacacacaca
cacacacacacacacacacagagtctatgaccccagcactcctagggtga
agcgtcaggaagctgcctgagcagtgaggaggcaggaacggcaggatcga
cctcgcctccgtgacgaggaagaagagagccagctcccaaaagtgactct
ctgatctcccacatgtgcgacatgcccacactcacacacacattcacaca
cacattcacacacacacattcacacacacggtgctggggaggctctcaac
agtgaggagcactggctgccctttgcagtggactgactgggtttggttcc
cagcacccacacaggcgctcacacccacctgtaacaccagcaacagcaga
tccaacacctccttctgggcctctgtggacataggcagtacacataccta
cagaacacgcagaaccactaattgcacataaaaaatatttataagatctc
tcctatacagaac
actctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcc
tcccaagtgctgggattaaaggcctgtgccaccactgcccgccccaccct
gggatttttactgagtgttagagatctgaattcagttctgcacacttgcc
caagaaacaaccaactaaataaacttgctagccttccattatctttaagc
attctcagtgctttaacttattattttgtgtgcacggatgttttgtgtgt
ctgtgtagcgtgtgcatgcagggtctgtggaggctgatagagggcgttgg
gttccatggaattggagttgcagacagctgtgagctgccatgtggttgct
gggaactgaacttgggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100488905_100489959
seq2: B6Ng01-215K15.b_42_1104 (reverse)

seq1  GTTCTGTATAG--GAGATCTTATAAATATTTTTTATGTGC-ATTAGT-GT  46
      |||||||||||  ||||||||||||||||||||||||||| |||||| ||
seq2  GTTCTGTATAGGAGAGATCTTATAAATATTTTTTATGTGCAATTAGTGGT  50

seq1  TCTGCGTG-TCTGTAGGTATGTGTACTGCCTATGTCCACAGAGG-CCAGA  94
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGCGTGTTCTGTAGGTATGTGTACTGCCTATGTCCACAGAGGCCCAGA  100

seq1  AGGAGGTGTTGGATCTGCTGGTGCTGGTGTTACAGGTGGTTGTGAGCGCC  144
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  AGGAGGTGTTGGATCTGCTGTTGCTGGTGTTACAGGTGGGTGTGAGCGCC  150

seq1  TGTGTGGGTGCTGGGAACCAAACCCAGTCAGTCCACTGC-AAGGGCAGCC  193
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTGTGGGTGCTGGGAACCAAACCCAGTCAGTCCACTGCAAAGGGCAGCC  200

seq1  AGTGCTCCTCACTGTTGAGAGCCTCCCCAGCACCGTGTGTGTGAATGTGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCTCACTGTTGAGAGCCTCCCCAGCACCGTGTGTGTGAATGTGT  250

seq1  GTGTGTGAATGTGTGTGTGAATGTGTGTGTGAGTGTGGGCATGTCGCACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAATGTGTGTGTGAATGTGTGTGTGAGTGTGGGCATGTCGCACA  300

seq1  TGT-GGAGATCAGAGAGTCACTTTTGGGAGCTGGCTCTCTTCTTCCTCGT  342
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGATCAGAGAGTCACTTTTGGGAGCTGGCTCTCTTCTTCCTCGT  350

seq1  CACGGAGGCGAGGTCGATCCTGCCGTTCCTGCCTCCTCACTGCTCAGGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGGCGAGGTCGATCCTGCCGTTCCTGCCTCCTCACTGCTCAGGCA  400

seq1  GCTTCCTGACGCTTCACCCTAGGAGTGCTGGGGTCATAGACTCTGTGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGACGCTTCACCCTAGGAGTGCTGGGGTCATAGACTCTGTGTGT  450

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGAGAGAGAGAGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGAGAGAGAGAGAG  500

seq1  AGAGAGAGACAGAGAGAGACAGAGACAGAGACACAGAGAGACAGAGAGAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGACAGAGAGAGACAGAGACAGAGACACAGAGAGACAGAGAGAC  550

seq1  AGAAAGAGCCAGAGACACTGGGATTATACTGCATCCGGATTGCTTTTTGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGCCAGAGACACTGGGATTATACTGCATCCGGATTGCTTTTTGA  600

seq1  AACACTGGTTCTAGAATTGACCTCAGGGTATCAAGCCTGCCTGGCCAGCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGTTCTAGAATTGACCTCAGGGTATCAAGCCTGCCTGGCCAGCC  650

seq1  CCCAGTCAACCAACCACCTAACTGGCCCAGGGCTCTAACTTTTCTTCTAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCAACCAACCACCTAACTGGCCCAGGGCTCTAACTTTTCTTCTAC  700

seq1  ACCAACTTGAGGACAAGCCTCCCAGACATCTTCCTCAGTGTACTGGTTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTGAGGACAAGCCTCCCAGACATCTTCCTCAGTGTACTGGTTAT  750

seq1  AGCCTGTTCTCCCCCAACCGCCATTCTCTTCCCCTCTATGTGGGTAAACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTCTCCCCCAACCGCCATTCTCTTCCCCTCTATGTGGGTAAACT  800

seq1  TCAGTTTCTAGGATCAGGGTGGAGAGGAAGAGGAGGGCCAGATGTGGGCG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTAGGATCAGGGTGGAGAGGAAGAGGAGGGCCAGATGTGGGCG  850

seq1  TTTTGGAGCCTGACCTCAGGGGTGTGGGAGGGACTGAGGGATGCTGCCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGCCTGACCTCAGGGGTGTGGGAGGGACTGAGGGATGCTGCCAG  900

seq1  TCAGCTCATGGGTGGACCGACCAGCTTGGGAACGGAGTATTTGAAACCTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCATGGGTGGACCGACCAGCTTGGGAACGGAGTATTTGAAACCTA  950

seq1  GAAGATGTTACACAGTATACCAGGAAATTCTTGCTGTGGACTTGCTCATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTTACACAGTATACCAGGAAATTCTTGCTGTGGACTTGCTCATT  1000

seq1  ACTAGAAAGCCTAGTGACTCTTAAATTAAAAGACAAAAAGGGCGCAGGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAGCCTAGTGACTCTTAAATTAAAAGACAAAAAGGGCGCAGGGG  1050

seq1  AGGGAGAGAATTC  1055
      |||||||||||||
seq2  AGGGAGAGAATTC  1063

seq1: chr15_100288881_100289254
seq2: B6Ng01-215K15.g_67_440

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGTGCCACCACTGCCCGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGTGCCACCACTGCCCGCCC  100

seq1  CACCCTGGGATTTTTACTGAGTGTTAGAGATCTGAATTCAGTTCTGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGGATTTTTACTGAGTGTTAGAGATCTGAATTCAGTTCTGCACA  150

seq1  CTTGCCCAAGAAACAACCAACTAAATAAACTTGCTAGCCTTCCATTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCAAGAAACAACCAACTAAATAAACTTGCTAGCCTTCCATTATCT  200

seq1  TTAAGCATTCTCAGTGCTTTAACTTATTATTTTGTGTGCACGGATGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATTCTCAGTGCTTTAACTTATTATTTTGTGTGCACGGATGTTTT  250

seq1  GTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTGTGGAGGCTGATAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTGTGGAGGCTGATAGAGGG  300

seq1  CGTTGGGTTCCATGGAATTGGAGTTGCAGACAGCTGTGAGCTGCCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGGTTCCATGGAATTGGAGTTGCAGACAGCTGTGAGCTGCCATGTG  350

seq1  GTTGCTGGGAACTGAACTTGGGTC  374
      ||||||||||||||||||||||||
seq2  GTTGCTGGGAACTGAACTTGGGTC  374