BAC Information

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BAC

Clone NameB6Ng01-215L22
Chromosome15 (Build37)
Map Location 23,149,902 - 23,258,304
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215L22.bB6Ng01-215L22.g
ACCGA032623GA032624
length1,1471,067
definitionB6Ng01-215L22.b B6Ng01-215L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,149,902 - 23,151,053)(23,257,252 - 23,258,304)
sequence
gaattccttagtgtgccttttcagaattctgagttagactgttcctactg
ctacagcaaattctctaaaatcaatcatttaaaagcatgaaaatgcatct
ctaataaatttaattgacagtaagttctagattgttcttacagagttttt
taaaaaaagaaagagttgggcagactttctatcatttttatagtatcagg
aaaaaattcatagtttgttgttgttgttattgttgttgttagtttcaagc
gacctctctttgattcttgtgtgaggcttcatatgcttccaaaacagaaa
gaagtgttgaaattttcttaatttttcttttggtcttttgtactaaccct
gcacgactagataaatattccaaagtcacagtgttgatactactaccact
tcaaattattgagaaatgaggcttctaatattgtacttcaagatccccaa
cttggaattaggctaatatcacattgcttcatcaatatttttatgaaaaa
tcagtgttggtttgatgagaggttgctaacattgcatatcgacacttatt
tccttcttctactgaaatataaagatgagcatttcaattactcaaatatt
gtgtcaacactatattacatttttaactttgtgacccacctttgtaatag
agcttgaagtcctaactcaaagtaactttcaaaattaatgactttgccac
catgtccttaaccttttaaaattattcgtctgtaaggaatcacatattat
cttggctagcaattgtgcattggagtgaaagctataaatttttaggtcat
gatcctaatgtggtctagggagcataaacagttttatggagtgaattcat
gtgtgtcacgtaagcactggaagtgccgtatgtttctatttaacaccagc
caaagacattttatgaatgcaatgcaagaaaattgttcatgttactttct
tgagtggctacatttctgtttttcttctttatcgttccttcctttttgtc
tgctgaagggaaacttgtagaaattgctttattagttaatcctcataaca
cacaggagttttttgtctgtagccaacaggaatgacaatattatctcttc
aaacagtttaagaaaactaacatttatccctctgcattttataatac

gaattctgtgttgcaatgtggaagcagattcataatttttgtatagaaac
agaacaaaggtagtcataaatcaaatacttctctaaatattggggaaata
ttaagtaggtaggttaaaggaaagtttatttcgggtaaaataaactccct
gatgacaatcttacttttttacttgatgcaaaccatggcttgcttttgat
tattgtatttcaaaagattttattaattagtctcaggattttgggttaga
ataacagataagcaagcagtggttattcagagggctaaacatagcccatg
ataaattatatttatggttcagacttgcaacattcatacctctccatact
cactgaagttataaccatccaataaaccttacagaacctttcacagaaga
tgcagcattttcctcccagggaactgccgtttttcattcatatgaaacta
ttaaacaggatctcaattagaacaggcagatttgaccttgccttgaagat
gttcaaactttgatctcctagagacagaggagatcttagcattgacctag
catggctgctctaatggtggggatttgactcttgtttacattgcaagggt
gtgcacttagatcctggtaataccaaagaataactcatttggttctgttg
tagtcatacactgtgactgtctcacaagattgggtaaagaagcaagaggt
agaggcatcttaactgtgagctagcttgtgtaatggaatttgtcactaag
tgcttgaattgtatcgtggctatcctgcaaaagtaaggtatgatgttcag
tcattaacagtctcaaactggtgcaaatggagattgcatttgacttgaag
aagaaacagtgggttttacttattatacatgatatgctttttaaatttaa
gactcatgtgaagttgaagaaaacacaattttttgatggatggccctgtt
aagttacttattcaaagaagacatttttttctttggtgttgcattattta
atttttgacttgtgtaaccagagcaacagttttttttttttttttttggt
attttttgtttttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23149902_23151053
seq2: B6Ng01-215L22.b_44_1190

seq1  GAATTCCTTAGTGTGCCTTTTCAGAATTCTGAGTTAGACTGTTCCTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTGTGCCTTTTCAGAATTCTGAGTTAGACTGTTCCTACTG  50

seq1  CTACAGCAAATTCTCTAAAATCAATCATTTAAAAGCATGAAAATGCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAAATTCTCTAAAATCAATCATTTAAAAGCATGAAAATGCATCT  100

seq1  CTAATAAATTTAATTGACAGTAAGTTCTAGATTGTTCTTACAGAGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAATTTAATTGACAGTAAGTTCTAGATTGTTCTTACAGAGTTTTT  150

seq1  TAAAAAAAGAAAGAGTTGGGCAGACTTTCTATCATTTTTATAGTATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGAAAGAGTTGGGCAGACTTTCTATCATTTTTATAGTATCAGG  200

seq1  AAAAAATTCATAGTTTGTTGTTGTTGTTATTGTTGTTGTTAGTTTCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCATAGTTTGTTGTTGTTGTTATTGTTGTTGTTAGTTTCAAGC  250

seq1  GACCTCTCTTTGATTCTTGTGTGAGGCTTCATATGCTTCCAAAACAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCTTTGATTCTTGTGTGAGGCTTCATATGCTTCCAAAACAGAAA  300

seq1  GAAGTGTTGAAATTTTCTTAATTTTTCTTTTGGTCTTTTGTACTAACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTGAAATTTTCTTAATTTTTCTTTTGGTCTTTTGTACTAACCCT  350

seq1  GCACGACTAGATAAATATTCCAAAGTCACAGTGTTGATACTACTACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGACTAGATAAATATTCCAAAGTCACAGTGTTGATACTACTACCACT  400

seq1  TCAAATTATTGAGAAATGAGGCTTCTAATATTGTACTTCAAGATCCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATTGAGAAATGAGGCTTCTAATATTGTACTTCAAGATCCCCAA  450

seq1  CTTGGAATTAGGCTAATATCACATTGCTTCATCAATATTTTTATGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATTAGGCTAATATCACATTGCTTCATCAATATTTTTATGAAAAA  500

seq1  TCAGTGTTGGTTTGATGAGAGGTTGCTAACATTGCATATCGACACTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTGGTTTGATGAGAGGTTGCTAACATTGCATATCGACACTTATT  550

seq1  TCCTTCTTCTACTGAAATATAAAGATGAGCATTTCAATTACTCAAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCTACTGAAATATAAAGATGAGCATTTCAATTACTCAAATATT  600

seq1  GTGTCAACACTATATTACATTTTTAACTTTGTGACCCACCTTTGTAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAACACTATATTACATTTTTAACTTTGTGACCCACCTTTGTAATAG  650

seq1  AGCTTGAAGTCCTAACTCAAAGTAACTTTCAAAATTAATGACTTTGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAGTCCTAACTCAAAGTAACTTTCAAAATTAATGACTTTGCCAC  700

seq1  CATGTCCTTAACCTTTTAAAATTATTCGTCTGTAAGGAATCACATATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTAACCTTTTAAAATTATTCGTCTGTAAGGAATCACATATTAT  750

seq1  CTTGGCTAGCAATTGTGCATTGGAGTGAAAGCTATAAATTTTTAGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAGCAATTGTGCATTGGAGTGAAAGCTATAAATTTTTAGGTCAT  800

seq1  GATCCTAATGTGGTCTAGGGAGCATAAACAGTTTTATGGAGTGAATTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAATGTGGTCTAGGGAGCATAAACAGTTTTATGGAGTGAATTCAT  850

seq1  GTGTGTCACGTAAGCACTGGAAGTGCCGTATGTTTCTATTTAACACCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCACGTAAGCACTGGAAGTGCCGTATGTTTCTATTTAACACCAGC  900

seq1  CAAAGACATTTTATGAATGCAATGCAAGAAAATTGTTCATGTTACTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATTTTATGAATGCAATGCAAGAAAATTGTTCATGTTACTTTCT  950

seq1  TGAGTGGCTACATTTCTGTTTTTCTTCTTTATCGTTCCTTCCTTTTTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCTACATTTCTGTTTTTCTTCTTTATCGTTCCTTCCTTTTTGTC  1000

seq1  TGCTGAAGGGAAACTTGTTAGAAA-TGCTTTATTAGGTAATCCCCAT-AC  1048
      ||||||||||||||||| |||||| ||||||||||| |||||| ||| ||
seq2  TGCTGAAGGGAAACTTG-TAGAAATTGCTTTATTAGTTAATCCTCATAAC  1049

seq1  ACACAGGAG-TTTTTGTCTGGTAGCACACAAGAATGACAATATAATCTCC  1097
      ||||||||| ||||||||| |||||  ||| |||||||||||| |||| |
seq2  ACACAGGAGTTTTTTGTCT-GTAGCCAACAGGAATGACAATATTATCT-C  1097

seq1  TTCACAACAGTTT-AGAAAACTAAACATTTATTCCCCCTTCTGCATTTTA  1146
      |||| |||||||| |||||||| |||||||||    || |||||||||||
seq2  TTCA-AACAGTTTAAGAAAACT-AACATTTAT----CCCTCTGCATTTTA  1141

seq1  TAATAC  1152
      ||||||
seq2  TAATAC  1147


seq1: chr15_23257252_23258304
seq2: B6Ng01-215L22.g_66_1132 (reverse)

seq1  TAAAAAAAAC-AAAAATACC--AAAAAAAAAAAAAAAACTGTTGCTCTGG  47
      |||||||||| |||||||||  ||||||||||||||||||||||||||||
seq2  TAAAAAAAACAAAAAATACCAAAAAAAAAAAAAAAAAACTGTTGCTCTGG  50

seq1  TTACACAGGCCAAAAA-TAAATAATGCCAACACCAAAG-AAAAAATGTC-  94
      ||||||| | |||||| ||||||||| ||||||||||| |||||||||| 
seq2  TTACACAAGTCAAAAATTAAATAATG-CAACACCAAAGAAAAAAATGTCT  99

seq1  TCTTTGA--TAGTACCTT-ACA-GGCCATCCATC-AAAAATTGTG-TTTC  138
      |||||||   |||| ||| ||| ||||||||||| |||||||||| ||||
seq2  TCTTTGAATAAGTAACTTAACAGGGCCATCCATCAAAAAATTGTGTTTTC  149

seq1  TTC-ACTTCACATGGGTCTT-AATTTAAAAAGCATATCATGTATAATAAG  186
      ||| |||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TTCAACTTCACATGAGTCTTAAATTTAAAAAGCATATCATGTATAATAAG  199

seq1  TAAAA-CCACTGTTTCTTCTTCAAGTCAAATGC-ATCTCCATTTGCACCA  234
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAACCCACTGTTTCTTCTTCAAGTCAAATGCAATCTCCATTTGCACCA  249

seq1  GTTTGAGACTGTTAATGACTGAACATCATACCTTACTTTTGCAGGATAGC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGACTGTTAATGACTGAACATCATACCTTACTTTTGCAGGATAGC  299

seq1  CACGATACAATTCAAGCACTTAGTGACAAATTCCCATTACACAAGCTAGC  334
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACGATACAATTCAAGCACTTAGTGACAAATT-CCATTACACAAGCTAGC  348

seq1  TCACAGTTAAGATGCCTCTACCTCTTGCTTCTTTACCCAATCTTGTGAGA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTAAGATGCCTCTACCTCTTGCTTCTTTACCCAATCTTGTGAGA  398

seq1  CAGTCACAGTGTATGACTACAACAGAACCAAATGAGTTATTCTTTGGTAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAGTGTATGACTACAACAGAACCAAATGAGTTATTCTTTGGTAT  448

seq1  TACCAGGATCTAAGTGCACACCCTTGCAATGTAAACAAGAGTCAAATCCC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGATCTAAGTGCACACCCTTGCAATGTAAACAAGAGTCAAATCCC  498

seq1  CACCATTAGAGCAGCCATGCTAGGTCAATGCTAAGATCTCCTCTGTCTCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTAGAGCAGCCATGCTAGGTCAATGCTAAGATCTCCTCTGTCTCT  548

seq1  AGGAGATCAAAGTTTGAACATCTTCAAGGCAAGGTCAAATCTGCCTGTTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCAAAGTTTGAACATCTTCAAGGCAAGGTCAAATCTGCCTGTTC  598

seq1  TAATTGAGATCCTGTTTAATAGTTTCATATGAATGAAAAACGGCAGTTCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGATCCTGTTTAATAGTTTCATATGAATGAAAAACGGCAGTTCC  648

seq1  CTGGGAGGAAAATGCTGCATCTTCTGTGAAAGGTTCTGTAAGGTTTATTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGAAAATGCTGCATCTTCTGTGAAAGGTTCTGTAAGGTTTATTG  698

seq1  GATGGTTATAACTTCAGTGAGTATGGAGAGGTATGAATGTTGCAAGTCTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTATAACTTCAGTGAGTATGGAGAGGTATGAATGTTGCAAGTCTG  748

seq1  AACCATAAATATAATTTATCATGGGCTATGTTTAGCCCTCTGAATAACCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAATATAATTTATCATGGGCTATGTTTAGCCCTCTGAATAACCA  798

seq1  CTGCTTGCTTATCTGTTATTCTAACCCAAAATCCTGAGACTAATTAATAA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTTATCTGTTATTCTAACCCAAAATCCTGAGACTAATTAATAA  848

seq1  AATCTTTTGAAATACAATAATCAAAAGCAAGCCATGGTTTGCATCAAGTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTGAAATACAATAATCAAAAGCAAGCCATGGTTTGCATCAAGTA  898

seq1  AAAAAGTAAGATTGTCATCAGGGAGTTTATTTTACCCGAAATAAACTTTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAGATTGTCATCAGGGAGTTTATTTTACCCGAAATAAACTTTC  948

seq1  CTTTAACCTACCTACTTAATATTTCCCCAATATTTAGAGAAGTATTTGAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCTACCTACTTAATATTTCCCCAATATTTAGAGAAGTATTTGAT  998

seq1  TTATGACTACCTTTGTTCTGTTTCTATACAAAAATTATGAATCTGCTTCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTACCTTTGTTCTGTTTCTATACAAAAATTATGAATCTGCTTCC  1048

seq1  ACATTGCAACACAGAATTC  1053
      |||||||||||||||||||
seq2  ACATTGCAACACAGAATTC  1067


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