BAC Information

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BAC

Clone NameB6Ng01-218B15
Chromosome15 (Build37)
Map Location 52,881,908 - 53,045,507
singlet/doubletdoublet
Overlap geneExt1
Upstream geneLOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218B15.bB6Ng01-218B15.g
ACCGA034321GA034322
length1,1571,105
definitionB6Ng01-218B15.b B6Ng01-218B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,881,908 - 52,883,053)(53,044,392 - 53,045,507)
sequence
gaattccaaaattctaaataccccagtagagtttagctactgtctttcta
tgtgttgctgttctagcttcccattggcttatatttgagaactttattac
tcagggcaaaagtggtcacatcttatattaactactttaaaaactatatt
tgttttcttgctagtgaatttggatattctgagaatattttaacttaaag
tacagggctgaggagatagctcattccataaagggcttgccatacaagca
tgagaacttgagtttgatcctcttatgtacatgagtatgtacataaaaca
gcgggcatggtagcaacacatgtaagatcccagcactagagagatggata
cagggggatccccagagttcccagccagaaagaaatgctgtttcaaaacc
aatggtagacagcacctgagcctgacacccaaggctgacctctgattttc
gcacacacaaatttacacacacacatacacactcaaaatttaaatcaaag
taaaatgatatataattaaatgcttacttctaagtggaaaattcctccag
ttactgacctgtataaatacttcctagtcaagatgtagaaggtttctaac
acctcaggcaatatctttcatttccatcccaatctagatatgactactat
tcttatttttattgtgtagttttatttttttctattacaaaacctcatga
aaatattttccaaatgctgtctttggatggggagaaaatttccatgaaaa
ctaaaagtttttctttccatttttgtgctggaaagtttttatgtcaacct
gacacagactgaagtcatctgagaggagggaacctcagttgagaaaatgc
cttcagaagattggacatttggtcattatattttcatcatggcaacaata
actctaactaagacagaaaattagtacccgaatcatgggggtattgcttt
ggcagacctgatgatgtttgttttgaaagggtctttgaaactttgactag
aaaagtcattgagtattcaaagcatggtggacttcatgtgggatcttgga
gaatatgattattggagatcacgttaggtgattaggagagaccaggtatc
actgaagggagaatcttctgggaaggtgttttcctaagagttcagcaact
acatgca

gaattctttgtcctgcttattgggcaggtgacttaataatatctttgtac
ggtcttcttaagttattgaaactctctcttcactgtcctaaggaatggca
gcaaccatgaatagacatcaataaatgtcaaatacaatgggtcctgttag
caacagcaatggtagcagctcattattgcaggggatagtgggcctagtta
ctacatgttcacctcttttggtttgtggagttacccacagtttcataagc
atttaacttttatccttggaatgtaactagttagatttaatcttacgttt
gatatttctgttattttgtttttcccaattcttagccagttttttttgtg
gttttcatcttgaacgtattctccgatgataactgaggtaaaattttgag
agtgccgtttaaggaccccctgtttaggacttttctttttaatttcatga
ctccttatggttctgtgtgagaggaaagggaatttatttccttggccacc
gttcaaaacaaagactaatgacacaaatgagcagaaacagtgactttgtg
agtgacaggtggggcctagccacagctctcccttcctcagagttttcagg
tacattctgggaaagttagctgaattcaaaagactcaccttggtggggtc
acctctccgtgcccagcacaaaacggcaaggagcttttccatcccataat
tctccctttcatgattttctcagctggattcttcaaaggcttatttgtaa
agacctttatggtgtgttatgatttaatcagatgtagctcaaatttccca
agatgtgttaattatccttgtcatgcaagtgcagccgaggaagcaaaatg
ctttttcatttggatgggttgagggtttgttttaaatgtacttagggcca
ttaggatcaaatcaaacatagtgcatggtaattatgtatggaataaaaga
ttacctgccgtttagttagccagtttccgatcagattgcagcaaagtctg
agagaaaatggcatccccatagcagtagaatacagagatacctatttaag
aacatagtgactacctagtctacaaatagacagaaaagtaggtttatatt
ataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_52881908_52883053
seq2: B6Ng01-218B15.b_44_1200

seq1  GAATTCCAAAATTCTAAATACCCCAGTAGAGTTTAGCTACTGTCTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATTCTAAATACCCCAGTAGAGTTTAGCTACTGTCTTTCTA  50

seq1  TGTGTTGCTGTTCTAGCTTCCCATTGGCTTATATTTGAGAACTTTATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCTGTTCTAGCTTCCCATTGGCTTATATTTGAGAACTTTATTAC  100

seq1  TCAGGGCAAAAGTGGTCACATCTTATATTAACTACTTTAAAAACTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAAAAGTGGTCACATCTTATATTAACTACTTTAAAAACTATATT  150

seq1  TGTTTTCTTGCTAGTGAATTTGGATATTCTGAGAATATTTTAACTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGCTAGTGAATTTGGATATTCTGAGAATATTTTAACTTAAAG  200

seq1  TACAGGGCTGAGGAGATAGCTCATTCCATAAAGGGCTTGCCATACAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCTGAGGAGATAGCTCATTCCATAAAGGGCTTGCCATACAAGCA  250

seq1  TGAGAACTTGAGTTTGATCCTCTTATGTACATGAGTATGTACATAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTTGAGTTTGATCCTCTTATGTACATGAGTATGTACATAAAACA  300

seq1  GCGGGCATGGTAGCAACACATGTAAGATCCCAGCACTAGAGAGATGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCATGGTAGCAACACATGTAAGATCCCAGCACTAGAGAGATGGATA  350

seq1  CAGGGGGATCCCCAGAGTTCCCAGCCAGAAAGAAATGCTGTTTCAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGATCCCCAGAGTTCCCAGCCAGAAAGAAATGCTGTTTCAAAACC  400

seq1  AATGGTAGACAGCACCTGAGCCTGACACCCAAGGCTGACCTCTGATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGACAGCACCTGAGCCTGACACCCAAGGCTGACCTCTGATTTTC  450

seq1  GCACACACAAATTTACACACACACATACACACTCAAAATTTAAATCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAAATTTACACACACACATACACACTCAAAATTTAAATCAAAG  500

seq1  TAAAATGATATATAATTAAATGCTTACTTCTAAGTGGAAAATTCCTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATATATAATTAAATGCTTACTTCTAAGTGGAAAATTCCTCCAG  550

seq1  TTACTGACCTGTATAAATACTTCCTAGTCAAGATGTAGAAGGTTTCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGACCTGTATAAATACTTCCTAGTCAAGATGTAGAAGGTTTCTAAC  600

seq1  ACCTCAGGCAATATCTTTCATTTCCATCCCAATCTAGATATGACTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGCAATATCTTTCATTTCCATCCCAATCTAGATATGACTACTAT  650

seq1  TCTTATTTTTATTGTGTAGTTTTATTTTTTTCTATTACAAAACCTCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTTATTGTGTAGTTTTATTTTTTTCTATTACAAAACCTCATGA  700

seq1  AAATATTTTCCAAATGCTGTCTTTGGATGGGGAGAAAATTTCCATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCCAAATGCTGTCTTTGGATGGGGAGAAAATTTCCATGAAAA  750

seq1  CTAAAAGTTTTTCTTTCCATTTTTGTGCTGGAAAGTTTTTATGTCAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTTTTTCTTTCCATTTTTGTGCTGGAAAGTTTTTATGTCAACCT  800

seq1  GACACAGACTGAAGTCATCTGAGAGGAGGGAACCTCAGTTGAGAAAATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGACTGAAGTCATCTGAGAGGAGGGAACCTCAGTTGAGAAAATGC  850

seq1  CTTCAGAAGATTGGACATTTGGTCATTATA-TTTCATCATGGCAACAATA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTCAGAAGATTGGACATTTGGTCATTATATTTTCATCATGGCAACAATA  900

seq1  ACTCTAACTAAGACAG-AAATTAGTACCCGAATCAT-GGGGTATTGCTTT  947
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  ACTCTAACTAAGACAGAAAATTAGTACCCGAATCATGGGGGTATTGCTTT  950

seq1  GGCAGACCTGATGATG-TTGTTTTGAAA-GGTCTTTGAAACTTTGACTAG  995
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  GGCAGACCTGATGATGTTTGTTTTGAAAGGGTCTTTGAAACTTTGACTAG  1000

seq1  AAAAGTCATTGAGTATTCAAAGCATGGTGGACTTCATGTGGGATCTTGGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCATTGAGTATTCAAAGCATGGTGGACTTCATGTGGGATCTTGGA  1050

seq1  AGATATGATTATT-GAGATCAACGTAGGTGATTAAGAAGAGACCA-GTAT  1093
        ||||||||||| |||||||   ||||||||| || |||||||| ||||
seq2  GAATATGATTATTGGAGATCACGTTAGGTGATT-AGGAGAGACCAGGTAT  1099

seq1  CACTGAGGAGA-AATCTTCTGGGAA-GTGTTTT-CTAAGAG-TCAGC-AC  1138
      |||||| | || ||||||||||||| ||||||| ||||||| ||||| ||
seq2  CACTGAAGGGAGAATCTTCTGGGAAGGTGTTTTCCTAAGAGTTCAGCAAC  1149

seq1  CACATGCA  1146
       |||||||
seq2  TACATGCA  1157


seq1: chr15_53044392_53045507
seq2: B6Ng01-218B15.g_63_1167 (reverse)

seq1  TTAATAATAAAAACCTACTTTTCTTTTCTATTTTGTAGACTAGTGTAGTT  50
      || |||||| ||||||||||||| | |||| |||||||||||| |||| |
seq2  TTTATAATATAAACCTACTTTTC-TGTCTA-TTTGTAGACTAG-GTAG-T  46

seq1  CACTATGTTCCTTAAATAAGGTATTCTCCTGTATTCTACTGCTATGGGGA  100
      ||||||||| ||||||| ||||| ||| ||||||||||||||||||||||
seq2  CACTATGTT-CTTAAAT-AGGTA-TCT-CTGTATTCTACTGCTATGGGGA  92

seq1  TGCCAATTTTCTCTCAAGACTTTGCTGCAATCTGATCGGGAAACTGGCTA  150
      |||| |||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TGCC-ATTTTCTCTC-AGACTTTGCTGCAATCTGATC-GGAAACTGGCTA  139

seq1  CTTAAACGGCAGGTAATCTTTTATTCCATACATAATTACCATGCACTATG  200
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACGGCAGGTAATCTTTTATTCCATACATAATTACCATGCACTATG  189

seq1  TTTTGATTTGATCCTAATGGCCCTAAGTACATTTTAAACAAACCCTCAAC  250
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -TTTGATTTGATCCTAATGGCCCTAAGTACATTTAAAACAAACCCTCAAC  238

seq1  CCATCCAAATG-AAAAGCATTTTGCTTCCTCGGCTGCACTTGCATGACAA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAAATGAAAAAGCATTTTGCTTCCTCGGCTGCACTTGCATGACAA  288

seq1  GGATAATTAACACATCTTGGGAAATTTGAGCTACATCTGATTAAATCATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTAACACATCTTGGGAAATTTGAGCTACATCTGATTAAATCATA  338

seq1  ACACACCATAAAGGTCTTTACAAATAAGCCTTTGAAGAATCCAGCTGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATAAAGGTCTTTACAAATAAGCCTTTGAAGAATCCAGCTGAGA  388

seq1  AAATCATGAAAGGGAGAATTATGGGATGGAAAAGCTCCTTGCCGTTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGAAAGGGAGAATTATGGGATGGAAAAGCTCCTTGCCGTTTTGT  438

seq1  GCTGGGCACGGAGAGGTGACCCCACCAAGGTGAGTCTTTTGAATTCAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCACGGAGAGGTGACCCCACCAAGGTGAGTCTTTTGAATTCAGCT  488

seq1  AACTTTCCCAGAATGTACCTGAAAACTCTGAGGAAGGGAGAGCTGTGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCCAGAATGTACCTGAAAACTCTGAGGAAGGGAGAGCTGTGGCT  538

seq1  AGGCCCCACCTGTCACTCACAAAGTCACTGTTTCTGCTCATTTGTGTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCACCTGTCACTCACAAAGTCACTGTTTCTGCTCATTTGTGTCAT  588

seq1  TAGTCTTTGTTTTGAACGGTGGCCAAGGAAATAAATTCCCTTTCCTCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTGTTTTGAACGGTGGCCAAGGAAATAAATTCCCTTTCCTCTCA  638

seq1  CACAGAACCATAAGGAGTCATGAAATTAAAAAGAAAAGTCCTAAACAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACCATAAGGAGTCATGAAATTAAAAAGAAAAGTCCTAAACAGGG  688

seq1  GGTCCTTAAACGGCACTCTCAAAATTTTACCTCAGTTATCATCGGAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTAAACGGCACTCTCAAAATTTTACCTCAGTTATCATCGGAGAAT  738

seq1  ACGTTCAAGATGAAAACCACAAAAAAAACTGGCTAAGAATTGGGAAAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCAAGATGAAAACCACAAAAAAAACTGGCTAAGAATTGGGAAAAAC  788

seq1  AAAATAACAGAAATATCAAACGTAAGATTAAATCTAACTAGTTACATTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACAGAAATATCAAACGTAAGATTAAATCTAACTAGTTACATTCC  838

seq1  AAGGATAAAAGTTAAATGCTTATGAAACTGTGGGTAACTCCACAAACCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAAGTTAAATGCTTATGAAACTGTGGGTAACTCCACAAACCAA  888

seq1  AAGAGGTGAACATGTAGTAACTAGGCCCACTATCCCCTGCAATAATGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTGAACATGTAGTAACTAGGCCCACTATCCCCTGCAATAATGAGC  938

seq1  TGCTACCATTGCTGTTGCTAACAGGACCCATTGTATTTGACATTTATTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCATTGCTGTTGCTAACAGGACCCATTGTATTTGACATTTATTGA  988

seq1  TGTCTATTCATGGTTGCTGCCATTCCTTAGGACAGTGAAGAGAGAGTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTCATGGTTGCTGCCATTCCTTAGGACAGTGAAGAGAGAGTTTC  1038

seq1  AATAACTTAAGAAGACCGTACAAAGATATTATTAAGTCACCTGCCCAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTAAGAAGACCGTACAAAGATATTATTAAGTCACCTGCCCAATA  1088

seq1  AGCAGGACAAAGAATTC  1116
      |||||||||||||||||
seq2  AGCAGGACAAAGAATTC  1105


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