BAC Information

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BAC

Clone NameB6Ng01-222D17
Chromosome15 (Build37)
Map Location 38,051,140 - 38,194,698
singlet/doubletdoublet
Overlap geneOdf1, LOC382986, LOC667563
Upstream geneLOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1
Downstream geneKlf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222D17.bB6Ng01-222D17.g
ACCGA037308GA037309
length5631,124
definitionB6Ng01-222D17.b B6Ng01-222D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,194,130 - 38,194,698)(38,051,140 - 38,052,260)
sequence
atctctggtgtctttaaacccagcttaagattctccagatttgggcgtga
ggtttaggcacaaaggaagaatgtttttaaaaataatttggggctggaaa
ggcagctggttaagagctccagctgcttttctagagggcctgtttgattc
ctagcacccacacatcagcttacagtcaaatgtaactccatttgcagggg
atttaacaacctcttctggcctctgcaggcgttacatgcatatacacaca
tgcagacagaacgctcatctacatgaaataaatataaataatatattttt
aaaaattagttgactcatcaaaaattggattagagggccagggatatagc
tcagtggtaaagcatttgcccaccgtgagtaaggcccctaggtgtgattc
ccagacctgcaattcacccattgggttagcgtgttatattctgtgccttg
atttttctggctcaaggagttcgcttcaattccatgagcattatactaac
tcattcttggattctttggtaggatttgatgtgtgtgtttgagtgtgcat
gtgtgtgggagtg
gaattccatccctaccagcagcagagaccacacaggcagcccaggcttcc
acgttacccacccacataatgagacactttttgcccactgggatggtgtc
agagtagggctttgcctatgcccagcagcaaccaggctaccccatgccct
gtgatgtcagtggaagccacgtgggctgtatatagaaggtcctacttcta
tccttggcagtgagaacagcagactaagaagcgtctggggtaacactcaa
tggaacaggacttgcatagcaagtgtaagatcctgggtttgtttttcagt
actgcaaaaatggaaaattctcacctaacctagaaaaggccaaagaaaaa
aaagcaataaacagtgaaaatcattgagaaaaccacaataaaggcaaaca
taatgaaacagatctttctataaaaaagatcattgcaatgcaggggtaag
tagtaagatggataaatcacaaagaaatagatatgaaaaataatgcaggg
atatagttgtacactgcccacatatcaaacatgtaatacaagctgtgaaa
tataggtcagaggtagaacagaaatgtccagtgtacaagccccacccctg
ttgtggtaaatctcaatcccaaatatgctccggcaatgaaaacacaatac
agttaatatgatttcatgctgtgcacctagattgggcagctctaccacta
cactaccatcttccacatctatgagaccccttagaacttgtggttccttc
agccatgtgcttctgctctgcttttctttgtcttcctcctcctctgcatc
ctctccctcttccgttttctccttcgtctctccccactttctgctctacc
ttcccttctatctacccaatcatcagctctgctttattttacaaattgaa
gtgtgaatcaagtttacaggaaatcacctgagtgctgactcactcccttg
ttcacaaccactcacaggagaacgggaattaacatcaaatataattagcc
ccaaggctatccacaacatctcacccccacccccaatgaaataagcctta
aagattactacaaaaagatacactactaaaaattagagttagaataaaaa
tacatactttattgctgttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_38194130_38194698
seq2: B6Ng01-222D17.b_49_617 (reverse)

seq1  CACTCCCACACACATGCACACTCAAACACACACATCAAATCCTACCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACACACATGCACACTCAAACACACACATCAAATCCTACCAAAG  50

seq1  AATCCAAGAATGAGTTAGTATAATGCTCATGGAATTGAAGCGAACTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGAATGAGTTAGTATAATGCTCATGGAATTGAAGCGAACTCCTT  100

seq1  GAGCCAGAAAAATCAAGGCACAGAATATAACACGCTAACCCAATGGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAAAAATCAAGGCACAGAATATAACACGCTAACCCAATGGGTGA  150

seq1  ATTGCAGGTCTGGGAATCACACCTAGGGGCCTTACTCACGGTGGGCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGTCTGGGAATCACACCTAGGGGCCTTACTCACGGTGGGCAAAT  200

seq1  GCTTTACCACTGAGCTATATCCCTGGCCCTCTAATCCAATTTTTGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACCACTGAGCTATATCCCTGGCCCTCTAATCCAATTTTTGATGAG  250

seq1  TCAACTAATTTTTAAAAATATATTATTTATATTTATTTCATGTAGATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAATTTTTAAAAATATATTATTTATATTTATTTCATGTAGATGAG  300

seq1  CGTTCTGTCTGCATGTGTGTATATGCATGTAACGCCTGCAGAGGCCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGTCTGCATGTGTGTATATGCATGTAACGCCTGCAGAGGCCAGAA  350

seq1  GAGGTTGTTAAATCCCCTGCAAATGGAGTTACATTTGACTGTAAGCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGTTAAATCCCCTGCAAATGGAGTTACATTTGACTGTAAGCTGAT  400

seq1  GTGTGGGTGCTAGGAATCAAACAGGCCCTCTAGAAAAGCAGCTGGAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTGCTAGGAATCAAACAGGCCCTCTAGAAAAGCAGCTGGAGCTC  450

seq1  TTAACCAGCTGCCTTTCCAGCCCCAAATTATTTTTAAAAACATTCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGCTGCCTTTCCAGCCCCAAATTATTTTTAAAAACATTCTTCCT  500

seq1  TTGTGCCTAAACCTCACGCCCAAATCTGGAGAATCTTAAGCTGGGTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTAAACCTCACGCCCAAATCTGGAGAATCTTAAGCTGGGTTTAA  550

seq1  AGACACCAGAGATGAATTC  569
      |||||||||||||||||||
seq2  AGACACCAGAGATGAATTC  569

seq1: chr15_38051140_38052260
seq2: B6Ng01-222D17.g_64_1187

seq1  GAATTCCATCCCTACCAGCAGCAGAGACCACACAGGCAGCCCAGGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCTACCAGCAGCAGAGACCACACAGGCAGCCCAGGCTTCC  50

seq1  ACGTTACCCACCCACATAATGAGACACTTTTTGCCCACTGGGATGGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTACCCACCCACATAATGAGACACTTTTTGCCCACTGGGATGGTGTC  100

seq1  AGAGTAGGGCTTTGCCTATGCCCAGCAGCAACCAGGCTACCCCATGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGGCTTTGCCTATGCCCAGCAGCAACCAGGCTACCCCATGCCCT  150

seq1  GTGATGTCAGTGGAAGCCACGTGGGCTGTATATAGAAGGTCCTACTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCAGTGGAAGCCACGTGGGCTGTATATAGAAGGTCCTACTTCTA  200

seq1  TCCTTGGCAGTGAGAACAGCAGACTAAGAAGCGTCTGGGGTAACACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCAGTGAGAACAGCAGACTAAGAAGCGTCTGGGGTAACACTCAA  250

seq1  TGGAACAGGACTTGCATAGCAAGTGTAAGATCCTGGGTTTGTTTTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGGACTTGCATAGCAAGTGTAAGATCCTGGGTTTGTTTTTCAGT  300

seq1  ACTGCAAAAATGGAAAATTCTCACCTAACCTAGAAAAGGCCAAAGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAAAATGGAAAATTCTCACCTAACCTAGAAAAGGCCAAAGAAAAA  350

seq1  AAAGCAATAAACAGTGAAAATCATTGAGAAAACCACAATAAAGGCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATAAACAGTGAAAATCATTGAGAAAACCACAATAAAGGCAAACA  400

seq1  TAATGAAACAGATCTTTCTATAAAAAAGATCATTGCAATGCAGGGGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACAGATCTTTCTATAAAAAAGATCATTGCAATGCAGGGGTAAG  450

seq1  TAGTAAGATGGATAAATCACAAAGAAATAGATATGAAAAATAATGCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGATGGATAAATCACAAAGAAATAGATATGAAAAATAATGCAGGG  500

seq1  ATATAGTTGTACACTGCCCACATATCAAACATGTAATACAAGCTGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTGTACACTGCCCACATATCAAACATGTAATACAAGCTGTGAAA  550

seq1  TATAGGTCAGAGGTAGAACAGAAATGTCCAGTGTACAAGCCCCACCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTCAGAGGTAGAACAGAAATGTCCAGTGTACAAGCCCCACCCCTG  600

seq1  TTGTGGTAAATCTCAATCCCAAATATGCTCCGGCAATGAAAACACAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAAATCTCAATCCCAAATATGCTCCGGCAATGAAAACACAATAC  650

seq1  AGTTAATATGATTTCATGCTGTGCACCTAGATTGGGCAGCTCTACCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATGATTTCATGCTGTGCACCTAGATTGGGCAGCTCTACCACTA  700

seq1  CACTACCATCTTCCACATCTATGAGACCCCTTAGAACTTGTGGTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCATCTTCCACATCTATGAGACCCCTTAGAACTTGTGGTTCCTTC  750

seq1  AGGCCATGTGCTTCTGCTCTGCTTTTCTTTGTCTTCCTCCTCCTCTGCAT  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GCCATGTGCTTCTGCTCTGCTTTTCTTTGTCTTCCTCCTCCTCTGCAT  799

seq1  CCTCTCCCTCTTCCGTTTTCTCCTTCGTCTCTCCCCACTTTCTGCTCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCTTCCGTTTTCTCCTTCGTCTCTCCCCACTTTCTGCTCTAC  849

seq1  CTTCCCTTCTATCTACCCAATCATCAGCTCTGCTTTATTTTACAAATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCTATCTACCCAATCATCAGCTCTGCTTTATTTTACAAATTGA  899

seq1  AGTGTGAATCAAGTTTACAGGAAATCACCTGAGTGCTGACTCACT-CCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTGTGAATCAAGTTTACAGGAAATCACCTGAGTGCTGACTCACTCCCTT  949

seq1  GTTCACAACCACTCACAGGAGAAC-GGAATTAACATCAAATATAATTAGC  998
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTCACAACCACTCACAGGAGAACGGGAATTAACATCAAATATAATTAGC  999

seq1  CCCAGGGCTATCCACAACATCTCA-CCCCACCCCCAATGAAATAAGCCCT  1047
      |||| ||||||||||||||||||| ||||||||||||||||||||||| |
seq2  CCCAAGGCTATCCACAACATCTCACCCCCACCCCCAATGAAATAAGCCTT  1049

seq1  AAAGATTACTACAAAAGATTACACTACTAAAAAATTTAGAG-TAGGATAA  1096
      ||||||||||||||||   ||||||||||||||  |||||| ||| ||||
seq2  AAAGATTACTACAAAAAGATACACTACTAAAAA--TTAGAGTTAGAATAA  1097

seq1  AATAGGATACTTTATTG--TTTGTTTG  1121
      ||    |||||||||||   |||||||
seq2  AAATACATACTTTATTGCTGTTGTTTG  1124