BAC Information

Click to search

BAC

Clone NameB6Ng01-225D22
Chromosome15 (Build37)
Map Location 70,944,487 - 71,084,140
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225D22.bB6Ng01-225D22.g
ACCGA039489GA039490
length7911,115
definitionB6Ng01-225D22.b B6Ng01-225D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,944,487 - 70,945,273)(71,083,014 - 71,084,140)
sequence
gaattcaggcagagagctccctcaaacacctgccacacattcacagatgc
aagaatgcacatggtgccaaggaagactctcaaaattgatgagttgcctg
ttttcttcacacacaaaggcatttaacaggccttttgcaataagggattt
ctggctgagcagtatgtctaacatactcttccttccccctctagagtttc
acctccacagattctgtctccccctcccccacctcttatggctcaatttt
ctttgttctcttgaaatttgctagatatgttactctatagcagctatcat
accacgaagttctttcttgctctcagaccacatcctgctgaagaaaaaaa
aaaaaatggtttgggggcttcagaggtaactaagtaagtgaatgacgtaa
actggactctaagtcccaatacattcagtgtatgtggttgagggggaagc
tcacttgttattcaagagttgaagatgcagaaacagggagactccagggc
aagttgaccagataaactgtcacagtcctggctcagcaagagactctgcc
tcagtataacagagatctatgcttttaatgtacttttggataataccatc
agaaatctatttagttattttgaaatatactaaggtaccttcaaagctaa
aactttaaaactttttaaaagtaaaatttagagactaccaactctacttt
tgtaaaaaggttattttctctactgagaatgactgtttaatatagtgtgt
atatatatgtgtttgtgtatatatatatatatatatacaca

gaattccatataattgccctatgcctacttcaatgatgctttcagaaatg
gtgttgtttcccatgatcctgctaaggggccctcctcctgatctgaagat
ggagtcttgagttttgctctgtgcttagcttcccattttgaattgtgtta
aagacttgtatttctttgttgaaggtacacaaccccaggtgtcattctct
gtgatctttccaacccagtagatgagcagctgtggggttcatgtgtcaat
gttctcttctatctacagatttgacatcagtgaaccctctttttatgtat
gcaaaagctaatttggcaaagtgatacatgcccctttgcctttctatact
caggggtctcatttgtctctcaggaacagttattcttgctgatggatata
ccagtatgtaaggggaaggttttcctgtcttacctctccacctttcatgt
ggatcagctatcttgcttctaatttttttccttctcttacattttaaact
ttcatttactccctggtactttgacttataacaaagacatctccagacct
cagagcactgggaagtcaaagccagcctttaaaattgtgattaagatatt
gagcctaattaagttcatgcttttttttctcttttctctaaacagaaaag
tcaatacaggatctttggcccctttaatagagattaaatggacagaaaca
ggatttgctgctttggagactaaaacaccagttttggtggtaattaatgg
cccttactgtgctgttcttccccttcgaaatgctggctggaggggcttcc
tctgcagtggttccctgtgatgctttgccagatgactctggtggtgcact
gcatatgctttcccttagaatcccctctcccttatgaaatctcctacata
ctctgaaggttgtttcttccccacggacaagctctaccatcccattccag
attagggtttttcagttccctctgcctagaattgtccaaccctaagaatt
gtctctgacttttctagtcaaaaattcctgggtttgaaagatcttcattt
ttctaagagacaaagactttctctcatgttcactcttgcatctcttagtt
gcaaaattgatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_70944487_70945273
seq2: B6Ng01-225D22.b_43_829

seq1  GAATTCAGGCAGAGAGCTCCCTCAAACACCTGCCACACATTCACAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGAGAGCTCCCTCAAACACCTGCCACACATTCACAGATGC  50

seq1  AAGAATGCACATGGTGCCAAGGAAGACTCTCAAAATTGATGAGTTGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCACATGGTGCCAAGGAAGACTCTCAAAATTGATGAGTTGCCTG  100

seq1  TTTTCTTCACACACAAAGGCATTTAACAGGCCTTTTGCAATAAGGGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCACACACAAAGGCATTTAACAGGCCTTTTGCAATAAGGGATTT  150

seq1  CTGGCTGAGCAGTATGTCTAACATACTCTTCCTTCCCCCTCTAGAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAGCAGTATGTCTAACATACTCTTCCTTCCCCCTCTAGAGTTTC  200

seq1  ACCTCCACAGATTCTGTCTCCCCCTCCCCCACCTCTTATGGCTCAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACAGATTCTGTCTCCCCCTCCCCCACCTCTTATGGCTCAATTTT  250

seq1  CTTTGTTCTCTTGAAATTTGCTAGATATGTTACTCTATAGCAGCTATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTCTTGAAATTTGCTAGATATGTTACTCTATAGCAGCTATCAT  300

seq1  ACCACGAAGTTCTTTCTTGCTCTCAGACCACATCCTGCTGAAGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGAAGTTCTTTCTTGCTCTCAGACCACATCCTGCTGAAGAAAAAAA  350

seq1  AAAAAATGGTTTGGGGGCTTCAGAGGTAACTAAGTAAGTGAATGACGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGTTTGGGGGCTTCAGAGGTAACTAAGTAAGTGAATGACGTAA  400

seq1  ACTGGACTCTAAGTCCCAATACATTCAGTGTATGTGGTTGAGGGGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTCTAAGTCCCAATACATTCAGTGTATGTGGTTGAGGGGGAAGC  450

seq1  TCACTTGTTATTCAAGAGTTGAAGATGCAGAAACAGGGAGACTCCAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTTATTCAAGAGTTGAAGATGCAGAAACAGGGAGACTCCAGGGC  500

seq1  AAGTTGACCAGATAAACTGTCACAGTCCTGGCTCAGCAAGAGACTCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACCAGATAAACTGTCACAGTCCTGGCTCAGCAAGAGACTCTGCC  550

seq1  TCAGTATAACAGAGATCTATGCTTTTAATGTACTTTTGGATAATACCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATAACAGAGATCTATGCTTTTAATGTACTTTTGGATAATACCATC  600

seq1  AGAAATCTATTTAGTTATTTTGAAATATACTAAGGTACCTTCAAAGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTATTTAGTTATTTTGAAATATACTAAGGTACCTTCAAAGCTAA  650

seq1  AACTTTAAAACTTTTTAAAAGTAAAATTTAGAGACTACCAACTCTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAACTTTTTAAAAGTAAAATTTAGAGACTACCAACTCTACTTT  700

seq1  TGTAAAAAGGTTATTTTCTCTACTGAGAATGACTGTTTAATATAGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGGTTATTTTCTCTACTGAGAATGACTGTTTAATATAGTGTGT  750

seq1  ATATATATGTGTTTGTGTATATATATATATATATATA  787
      |||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTGTTTGTGTATATATATATATATATATA  787


seq1: chr15_71083014_71084140
seq2: B6Ng01-225D22.g_65_1179 (reverse)

seq1  GCAAATCATATTTGGCAACCTAAGGAGATGC-AGAGTG-ACATGAGAGAA  48
      |||||||| |||| |||| |||| ||||||| |||||| |||||||||||
seq2  GCAAATCA-ATTTTGCAA-CTAA-GAGATGCAAGAGTGAACATGAGAGAA  47

seq1  AGTTTTTTTTTTTTTTTTTTTTTAGAAAAATGAAGGAATTCTTTTCAAAA  98
      ||         | ||| | | ||||||||||||||  ||   ||||||| 
seq2  AG---------TCTTTGTCTCTTAGAAAAATGAAG--AT--CTTTCAAAC  84

seq1  CCAGGAATTTTTGACTAAGGAAAAGTCAGAGGACAAT--CTAGGGTTGGA  146
      |||||||||||||||||  ||||||||||| ||||||   ||||||||||
seq2  CCAGGAATTTTTGACTA--GAAAAGTCAGA-GACAATTCTTAGGGTTGGA  131

seq1  CAA-TCTAGGCAGAGGGAACTGAAAACCCCTAATCTGGAATGGGATGGTA  195
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAATTCTAGGCAGAGGGAACTGAAAAACCCTAATCTGGAATGGGATGGTA  181

seq1  GAGCTTGTCCGTGGGGAAGAAACAACC-TCAGAGTATGTAGGAGATTTCA  244
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGCTTGTCCGTGGGGAAGAAACAACCTTCAGAGTATGTAGGAGATTTCA  231

seq1  TAAGGGAGAGGGGATTCT-AGGGAAAGCATATGCAGTGCACCACCAGAGT  293
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAGGGAGAGGGGATTCTAAGGGAAAGCATATGCAGTGCACCACCAGAGT  281

seq1  CATCTGGCAAAGCATCACAGGGAACCACTGCAGAGGAAGCCCCTCCAGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCAAAGCATCACAGGGAACCACTGCAGAGGAAGCCCCTCCAGCC  331

seq1  AGCATTTCGAAGGGGAAGAACAGCACAGTAAGGGCCATTAATTACCACCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCGAAGGGGAAGAACAGCACAGTAAGGGCCATTAATTACCACCA  381

seq1  AAACTGGTGTTTTAGTCTCCAAAGCAGCAAATCCTGTTTCTGTCCATTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTGTTTTAGTCTCCAAAGCAGCAAATCCTGTTTCTGTCCATTTA  431

seq1  ATCTCTATTAAAGGGGCCAAAGATCCTGTATTGACTTTTCTGTTTAGAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATTAAAGGGGCCAAAGATCCTGTATTGACTTTTCTGTTTAGAGA  481

seq1  AAAGAGAAAAAAAAGCATGAACTTAATTAGGCTCAATATCTTAATCACAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAAAAAAGCATGAACTTAATTAGGCTCAATATCTTAATCACAA  531

seq1  TTTTAAAGGCTGGCTTTGACTTCCCAGTGCTCTGAGGTCTGGAGATGTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGCTGGCTTTGACTTCCCAGTGCTCTGAGGTCTGGAGATGTCT  581

seq1  TTGTTATAAGTCAAAGTACCAGGGAGTAAATGAAAGTTTAAAATGTAAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAAGTCAAAGTACCAGGGAGTAAATGAAAGTTTAAAATGTAAGA  631

seq1  GAAGGAAAAAAATTAGAAGCAAGATAGCTGATCCACATGAAAGGTGGAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAAAATTAGAAGCAAGATAGCTGATCCACATGAAAGGTGGAGA  681

seq1  GGTAAGACAGGAAAACCTTCCCCTTACATACTGGTATATCCATCAGCAAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGACAGGAAAACCTTCCCCTTACATACTGGTATATCCATCAGCAAG  731

seq1  AATAACTGTTCCTGAGAGACAAATGAGACCCCTGAGTATAGAAAGGCAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGTTCCTGAGAGACAAATGAGACCCCTGAGTATAGAAAGGCAAA  781

seq1  GGGGCATGTATCACTTTGCCAAATTAGCTTTTGCATACATAAAAAGAGGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGTATCACTTTGCCAAATTAGCTTTTGCATACATAAAAAGAGGG  831

seq1  TTCACTGATGTCAAATCTGTAGATAGAAGAGAACATTGACACATGAACCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGATGTCAAATCTGTAGATAGAAGAGAACATTGACACATGAACCC  881

seq1  CACAGCTGCTCATCTACTGGGTTGGAAAGATCACAGAGAATGACACCTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGCTCATCTACTGGGTTGGAAAGATCACAGAGAATGACACCTGG  931

seq1  GGTTGTGTACCTTCAACAAAGAAATACAAGTCTTTAACACAATTCAAAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTACCTTCAACAAAGAAATACAAGTCTTTAACACAATTCAAAAT  981

seq1  GGGAAGCTAAGCACAGAGCAAAACTCAAGACTCCATCTTCAGATCAGGAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCTAAGCACAGAGCAAAACTCAAGACTCCATCTTCAGATCAGGAG  1031

seq1  GAGGGCCCCTTAGCAGGATCATGGGAAACAACACCATTTCTGAAAGCATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCCCTTAGCAGGATCATGGGAAACAACACCATTTCTGAAAGCATC  1081

seq1  ATTGAAGTAGGCATAGGGCAATTATATGGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTAGGCATAGGGCAATTATATGGAATTC  1115


| Home | SequenceCutter | Blast | Download |