BAC Information

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BAC

Clone NameB6Ng01-225M21
Chromosome15 (Build37)
Map Location 78,571,467 - 78,736,287
singlet/doubletdoublet
Overlap geneMfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1
Upstream geneApol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62
Downstream genePdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225M21.bB6Ng01-225M21.g
ACCGA039905GA039906
length539488
definitionB6Ng01-225M21.b B6Ng01-225M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,571,467 - 78,572,011)(78,735,794 - 78,736,287)
sequence
taacgaggcttctctttccatccaaaacctccaaagtgtgggtggacagc
aggcttgagagccctcgggggagcccaacccctgacctcctgacgtcttc
cacccccatactccgagcttcctggcaaagatattagacccataacttaa
aggacatgcaacttaactgcagacagcacctggagcaggtggagcagcct
gtgaccggggcaggaagtgacagccactaggcaaggtggatggagcagtg
gggaggtgtgggaacagtgatggaggcctatggggcaaaggtggaacagg
gactatagacagacataggtagtagctgggccctgagactgggttggggc
tgcataaaaacgtgccctgtgccctgggcagagttgcacagtccctagtc
tggaggccccatacttgggtaaaggcatggttactgctgtcctgaggaca
tttgttttgttttgatatgatttgatttgatttgatttgatttgatttga
tttgatttgatttattttgggtttgttatttggggggtg
ctctaggctgtggggatctgaggccatggtctgcttaaggcgcttcagca
cagaggccccagcagccagacggaagaggccctagggtgcaggaaagaac
acactgtgcatcacagagagcagggcaggagcaggttgccgagcctcagt
gtccccaccggtggtggtcagtagtcaggatggtgtctatggaccctccc
gactcccaaggtctggaattctgagctcaggccaggaatggaaagtgttg
gggctgggagatcagtggggacagtagtcttgttagggatggaaggggag
ggaaggctcagcattgttggtggggagcctgcaatccactcaaggttggg
tcattttcacctaagggtgctttttgtttttttccagaaatgcccaaaga
ctggtccgagggccttggattcctcgggtgattctggattcatttaattt
ttgactttctcccccttgccatacagagcccaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78571467_78572011
seq2: B6Ng01-225M21.b_48_592

seq1  GAATTCTAACGAGGCTTCTCTTTCCATCCAAAACCTCCAAAGTGTGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACGAGGCTTCTCTTTCCATCCAAAACCTCCAAAGTGTGGGTG  50

seq1  GACAGCAGGCTTGAGAGCCCTCGGGGGAGCCCAACCCCTGACCTCCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGCTTGAGAGCCCTCGGGGGAGCCCAACCCCTGACCTCCTGAC  100

seq1  GTCTTCCACCCCCATACTCCGAGCTTCCTGGCAAAGATATTAGACCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCACCCCCATACTCCGAGCTTCCTGGCAAAGATATTAGACCCATA  150

seq1  ACTTAAAGGACATGCAACTTAACTGCAGACAGCACCTGGAGCAGGTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGGACATGCAACTTAACTGCAGACAGCACCTGGAGCAGGTGGAG  200

seq1  CAGCCTGTGACCGGGGCAGGAAGTGACAGCCACTAGGCAAGGTGGATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTGACCGGGGCAGGAAGTGACAGCCACTAGGCAAGGTGGATGGA  250

seq1  GCAGTGGGGAGGTGTGGGAACAGTGATGGAGGCCTATGGGGCAAAGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGGAGGTGTGGGAACAGTGATGGAGGCCTATGGGGCAAAGGTGG  300

seq1  AACAGGGACTATAGACAGACATAGGTAGTAGCTGGGCCCTGAGACTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGACTATAGACAGACATAGGTAGTAGCTGGGCCCTGAGACTGGGT  350

seq1  TGGGGCTGCATAAAAACGTGCCCTGTGCCCTGGGCAGAGTTGCACAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGCATAAAAACGTGCCCTGTGCCCTGGGCAGAGTTGCACAGTCC  400

seq1  CTAGTCTGGAGGCCCCATACTTGGGTAAAGGCATGGTTACTGCTGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGGAGGCCCCATACTTGGGTAAAGGCATGGTTACTGCTGTCCTG  450

seq1  AGGACATTTGTTTTGTTTTGATATGATTTGATTTGATTTGATTTGATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTTGTTTTGTTTTGATATGATTTGATTTGATTTGATTTGATTTG  500

seq1  ATTTGATTTGATTTGATTTATTTTGGGTTTGTTATTTGGGGGGTG  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTGATTTGATTTATTTTGGGTTTGTTATTTGGGGGGTG  545

seq1: chr15_78735794_78736287
seq2: B6Ng01-225M21.g_69_562 (reverse)

seq1  TCCTCTTGGGCTCTGTTTGGCAAGGGGGAGAAAGTCAAAGATTAAATGAA  50
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TCCTCTTGGGCTCTGTATGGCAAGGGGGAGAAAGTCAAAAATTAAATGAA  50

seq1  TCCAGAATCACCCGAGGAATCCAGGGCCCTCGGACCAGTCTTTGGGCATT  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCAGAATCACCCGAGGAATCCAAGGCCCTCGGACCAGTCTTTGGGCATT  100

seq1  TCTGGAAAAAAACAAAAAGCACCCTTAGGTGAAAATGACCCAACCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAAAACAAAAAGCACCCTTAGGTGAAAATGACCCAACCTTGAG  150

seq1  TGGATTGCAGGCTCCCCACCAACAATGCTGAGCCTTCCCTCCCCTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCAGGCTCCCCACCAACAATGCTGAGCCTTCCCTCCCCTTCCAT  200

seq1  CCCTAACAAGACTACTGTCCCCACTGATCTCCCAGCCCCAACACTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACAAGACTACTGTCCCCACTGATCTCCCAGCCCCAACACTTTCCA  250

seq1  TTCCTGGCCTGAGCTCAGAATTCCAGACCTTGGGAGTCGGGAGGGTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCCTGAGCTCAGAATTCCAGACCTTGGGAGTCGGGAGGGTCCAT  300

seq1  AGACACCATCCTGACTACTGACCACCACCGGTGGGGACACTGAGGCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATCCTGACTACTGACCACCACCGGTGGGGACACTGAGGCTCGG  350

seq1  CAACCTGCTCCTGCCCTGCTCTCTGTGATGCACAGTGTGTTCTTTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCTCCTGCCCTGCTCTCTGTGATGCACAGTGTGTTCTTTCCTGC  400

seq1  ACCCTAGGGCCTCTTCCGTCTGGCTGCTGGGGCCTCTGTGCTGAAGCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGGCCTCTTCCGTCTGGCTGCTGGGGCCTCTGTGCTGAAGCGCC  450

seq1  TTAAGCAGACCATGGCCTCAGATCCCCACAGCCTAGAGGAATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGACCATGGCCTCAGATCCCCACAGCCTAGAGGAATTC  494